Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

14513317 .. 14516896

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGCGTTTAAGTGGGTTCTAGTTGCAATATGGATATGGGTTTGGTCAGCTTACTTGGCTGCTACACAATCCGATGATGGGTTACTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTTAGTAGAATAAATGCTGCAAGGATCACCAATAGAGTAGCTTCTCAACAGAGAGATAATGGGGATGATCTTAAAGCTAACATTGTATATTTGAAGAACTATCTGGACACCCAATTTTATGGAGAAATTGGTATTGGGACTCCCCCACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCGCCAATTTTTGGGTCCCGTCTTCGAGATGCATCCTTTCTATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTATGTCAAGTACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTCTGGTTCCATTTCCGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAATTATCGTTAAGCATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTTGTTGCATTCTTAACTGCACGGTTTGATGGGATTTTTGGACTTGGATTTCAGGATATTTCTGTTGGTGAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGAAGATTTTCTCTATTTGGCTCAATCATGATCCAAAATCATCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAGGCACTTTACGGGTGATCACACTTATGTCCCAATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGATTCTGCCAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTACTTGCTGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCCATTGGAGCAGAAGGATTTGCGAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATTTAGTATCTGGGGTACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCATATGATGGATCTCGTCATGTAAACAATCGTATTGAGACAGTGATTCGGAATGGAACTCAGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACTTTGTGTGAGATGATTGCCTATTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCATTTGTCAACTGTGATAACATTGCAGCCATGCCAGATGTTTCATTCGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAGGTGTTCTACCGTCTGCCTTAGCGGATTTGTTGGCTTGGATGTGCCTTCTCCACAAGGTCCACTATGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTCGACTTTGGTAATCTCAGGGTAGGATTTGCCAGAGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

503

Amino Acids

55.71

Weight (kDa)

6.02

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	77 - 500	2.7e-103	Eukaryotic aspartyl protease
TAXi_N	PF14543	79 - 236	3e-08	Xylanase inhibitor N-terminal
SapB_2	PF03489	312 - 344	7.6e-10	Saposin-like type B, region 2
SapB_1	PF05184	374 - 411	2.7e-07	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	306
AciI	CCGC	1 cut(s)	1380
AclWI	GGATC	3 cut(s)	149, 662, 1051
AcsI	RAATTY	2 cut(s)	411, 494
AcuI	CTGAAG	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	1462
AfaI	GTAC	4 cut(s)	382, 996, 1008, 1129
AfiI	CCNNNNNNNGG	2 cut(s)	78, 306
AgsI	TTSAA	5 cut(s)	211, 810, 1160, 1166, 1352
AjnI	CCWGG	1 cut(s)	822
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 684, 716
AleI	CACNNNNGTG	2 cut(s)	599, 601
AluBI	AGCT	7 cut(s)	50, 158, 194, 930, 1228, 1436, 1502
AluI	AGCT	7 cut(s)	50, 158, 194, 930, 1228, 1436, 1502
Alw26I	GTCTC	1 cut(s)	1064
AlwI	GGATC	3 cut(s)	149, 662, 1051
AoxI	GGCC	1 cut(s)	998
ApeKI	GCWGC	4 cut(s)	59, 134, 836, 1274
ApoI	RAATTY	2 cut(s)	411, 494
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	310, 872, 1415
AsuHPI	GGTGA	5 cut(s)	136, 599, 701, 743, 1309
AvaII	GGWCC	3 cut(s)	310, 872, 1415
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	4 cut(s)	46, 121, 823, 1286
BccI	CCATC	3 cut(s)	71, 542, 1034
BceAI	ACGGC	1 cut(s)	1013
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	1 cut(s)	824
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	1064
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	828
BisI	GCNGC	4 cut(s)	60, 135, 837, 1275
BlsI	GCNGC	4 cut(s)	61, 136, 838, 1276
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	3 cut(s)	310, 872, 1415
BmgT120I	GGNCC	3 cut(s)	310, 872, 1415
BmiI	GGNNCC	3 cut(s)	311, 312, 430
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	1311
Bpu10I	CCTNAGC	1 cut(s)	1376
BsaJI	CCNNGG	1 cut(s)	823
BsaXI	ACNNNNNCTCC	2 cut(s)	1309, 1339
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 306
Bse1I	ACTGG	3 cut(s)	295, 599, 773
Bse3DI	GCAATG	1 cut(s)	1269
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	1 cut(s)	823
BseGI	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BseLI	CCNNNNNNNGG	2 cut(s)	78, 306
BseMI	GCAATG	1 cut(s)	1269
BseMII	CTCAG	5 cut(s)	77, 864, 905, 1106, 1495
BseNI	ACTGG	3 cut(s)	295, 599, 773
BseXI	GCAGC	4 cut(s)	46, 121, 823, 1286
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	1000
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	4 cut(s)	268, 296, 731, 868
BslI	CCNNNNNNNGG	2 cut(s)	78, 306
BsmAI	GTCTC	1 cut(s)	1064
BsmFI	GGGAC	4 cut(s)	268, 296, 731, 868
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	1000
Bsp143I	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
BspACI	CCGC	1 cut(s)	1380
BspANI	GGCC	1 cut(s)	1000
BspCNI	CTCAG	5 cut(s)	78, 863, 904, 1105, 1494
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	311, 312, 430
BspPI	GGATC	3 cut(s)	149, 662, 1051
BsrDI	GCAATG	1 cut(s)	1269
BsrI	ACTGG	3 cut(s)	295, 599, 773
BssECI	CCNNGG	1 cut(s)	823
BssMI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
BstC8I	GCNNGC	2 cut(s)	343, 928
BstDEI	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
BstF5I	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	7 cut(s)	144, 187, 670, 736, 897, 1046, 1250
BstMAI	GTCTC	1 cut(s)	1064
BstMBI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 828, 911
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	1 cut(s)	1208
BstSCI	CCNGG	1 cut(s)	822
BstV1I	GCAGC	4 cut(s)	46, 121, 823, 1286
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	1043
BstXI	CCANNNNNNTGG	2 cut(s)	236, 908
BstYI	RGATCY	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	1000
BtsCI	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BtsIMutI	CAGTG	4 cut(s)	454, 606, 687, 1080
Cac8I	GCNNGC	2 cut(s)	343, 928
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	310, 872, 1415
Csp6I	GTAC	4 cut(s)	381, 995, 1007, 1128
CviAII	CATG	6 cut(s)	613, 665, 902, 1052, 1205, 1279
CviQI	GTAC	4 cut(s)	381, 995, 1007, 1128
DdeI	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
DpnI	GATC	7 cut(s)	143, 186, 669, 735, 896, 1045, 1249
DpnII	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
DraIII	CACNNNGTG	1 cut(s)	1462
Eco32I	GATATC	1 cut(s)	1021
Eco47I	GGWCC	3 cut(s)	310, 872, 1415
Eco57I	CTGAAG	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	822
EcoRV	GATATC	1 cut(s)	1021
EcoT22I	ATGCAT	1 cut(s)	329
FaeI	CATG	6 cut(s)	616, 668, 905, 1055, 1208, 1282
FaqI	GGGAC	4 cut(s)	268, 296, 731, 868
FatI	CATG	6 cut(s)	612, 664, 901, 1051, 1204, 1278
FauNDI	CATATG	1 cut(s)	1036
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	4 cut(s)	60, 135, 837, 1275
FokI	GGATG	6 cut(s)	93, 194, 314, 844, 1090, 1409
Fsp4HI	GCNGC	4 cut(s)	60, 135, 837, 1275
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	4 cut(s)	60, 135, 837, 1275
GsuI	CTGGAG	1 cut(s)	1311
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	1000
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	6 cut(s)	616, 668, 905, 1055, 1208, 1282
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HindIII	AAGCTT	1 cut(s)	1226
HinfI	GANTC	5 cut(s)	256, 816, 848, 1078, 1156
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	5 cut(s)	136, 599, 701, 743, 1309
Hpy166II	GTNNAC	3 cut(s)	1057, 1258, 1418
Hpy188I	TCNGA	5 cut(s)	73, 894, 969, 1083, 1095
Hpy188III	TCNNGA	7 cut(s)	221, 321, 491, 572, 665, 1297, 1328
Hpy8I	GTNNAC	3 cut(s)	1057, 1258, 1418
HpyAV	CCTTC	5 cut(s)	509, 911, 1090, 1324, 1413
HpyCH4III	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 828, 911
HpyF3I	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
Hsp92II	CATG	6 cut(s)	616, 668, 905, 1055, 1208, 1282
HspAI	GCGC	1 cut(s)	297
KflI	GGGWCCC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
LmnI	GCTCC	2 cut(s)	911, 1433
Lsp1109I	GCAGC	4 cut(s)	46, 121, 823, 1286
LweI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	81, 505
MalI	GATC	7 cut(s)	143, 186, 669, 735, 896, 1045, 1249
MboI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
MboII	GAAGA	5 cut(s)	223, 309, 652, 1257, 1364
MflI	RGATCY	1 cut(s)	1043
MluCI	AATT	8 cut(s)	230, 243, 301, 393, 411, 474, 494, 750
MlyI	GAGTC	2 cut(s)	250, 842
MmeI	TCCRAC	1 cut(s)	899
MnlI	CCTC	9 cut(s)	81, 445, 496, 680, 698, 711, 772, 1093, 1331
Mph1103I	ATGCAT	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	7 cut(s)	9, 189, 462, 483, 533, 1200, 1344
MslI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	824
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	824
MwoI	GCNNNNNNNGC	3 cut(s)	56, 828, 911
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
NlaIII	CATG	6 cut(s)	616, 668, 905, 1055, 1208, 1282
NlaIV	GGNNCC	3 cut(s)	311, 312, 430
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	1208
OliI	CACNNNNGTG	2 cut(s)	599, 601
PagI	TCATGA	1 cut(s)	664
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	816, 1078, 1156
PflMI	CCANNNNNTGG	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	61, 136, 838, 1276
PleI	GAGTC	2 cut(s)	250, 842
PpsI	GAGTC	2 cut(s)	250, 842
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	822
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	3 cut(s)	311, 312, 430
PspPI	GGNCC	3 cut(s)	310, 872, 1415
PspPPI	RGGWCCY	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	1323, 1355
PsuI	RGATCY	1 cut(s)	1043
RsaI	GTAC	4 cut(s)	382, 996, 1008, 1129
RsaNI	GTAC	4 cut(s)	381, 995, 1007, 1128
RseI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
SaqAI	TTAA	7 cut(s)	9, 189, 462, 483, 533, 1200, 1344
SatI	GCNGC	4 cut(s)	60, 135, 837, 1275
Sau3AI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
Sau96I	GGNCC	3 cut(s)	310, 872, 1415
SchI	GAGTC	2 cut(s)	250, 842
ScrFI	CCNGG	1 cut(s)	824
SfaNI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
SinI	GGWCC	3 cut(s)	310, 872, 1415
SmiMI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
Sse9I	AATT	8 cut(s)	230, 243, 301, 393, 411, 474, 494, 750
SsiI	CCGC	1 cut(s)	1380
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	822
TaaI	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
TaqI	TCGA	2 cut(s)	320, 1467
TasI	AATT	8 cut(s)	230, 243, 301, 393, 411, 474, 494, 750
TatI	WGTACW	2 cut(s)	1006, 1127
TfiI	GAWTC	3 cut(s)	816, 1078, 1156
Tru1I	TTAA	7 cut(s)	9, 189, 462, 483, 533, 1200, 1344
Tru9I	TTAA	7 cut(s)	9, 189, 462, 483, 533, 1200, 1344
TscAI	CASTG	4 cut(s)	454, 606, 687, 1080
TseI	GCWGC	4 cut(s)	59, 134, 836, 1274
TspDTI	ATGAA	4 cut(s)	341, 1023, 1128, 1281
TspGWI	ACGGA	1 cut(s)	1096
TspRI	CASTG	4 cut(s)	454, 606, 687, 1080
Van91I	CCANNNNNTGG	1 cut(s)	306
VpaK11BI	GGWCC	3 cut(s)	310, 872, 1415
XapI	RAATTY	2 cut(s)	411, 494
XceI	RCATGY	1 cut(s)	1208
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.