Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Forward (+)

59404271 .. 59408580

Gene Structure 4310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG277600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCAGATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTATGTCAAGTACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTTTGGTTCCATTTCTGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAGTTATCGTTAAGCATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTTGTTGCATTCTTAACTGCACGGTTTGATGGGGTTTTTGGACTTGGATTTCAGGATATTTCTGTTGGTCAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGCAGATTTTCTCTATATGGCTCAACCATGATCCAAAATCACCAGTGGGAGGTGAAATTGTCTTTGGAGGATATGATTGGAGGCACTTTACGGGTGATCACACTTATGTCCCGATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGATTCTGCAAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTGCTTGCCGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCAATCGGAGCAGAAGGATTTGCGAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATATAGTATCTGGGGCACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCGTATGATGGATCTCGTCATGTAAACAATCATATTGAGACAGTGGTTCAGAATGGAACTCGGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACTTTGTGTGAGATGATTGCCTACTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCGTTTGTCAACTGTGATAACCTTGCAGCCATGCCAGATGTTTCCTTTGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAAGTGTTCTACTATCTGCCTCAGCGGATTTGTTGGCTTGGATGTGCCTCCTCCACAAGGTCCACTATGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTCGACTTCGGTAATCTCAGGGTAGGATTTGCCAGAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

392

Amino Acids

43.28

Weight (kDa)

5.76

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	3 - 390	6.4e-82	Eukaryotic aspartyl protease
SapB_2	PF03489	202 - 234	2.5e-09	Saposin-like type B, region 2
SapB_1	PF05184	264 - 301	2e-07	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1050
AclWI	GGATC	2 cut(s)	332, 721
AcsI	RAATTY	2 cut(s)	81, 164
AcuI	CTGAAG	1 cut(s)	100
AdeI	CACNNNGTG	1 cut(s)	1132
AfaI	GTAC	3 cut(s)	52, 678, 799
AfiI	CCNNNNNNNGG	2 cut(s)	356, 1082
AgsI	TTSAA	4 cut(s)	480, 830, 836, 1022
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AleI	CACNNNNGTG	2 cut(s)	269, 271
AluBI	AGCT	4 cut(s)	600, 898, 1106, 1172
AluI	AGCT	4 cut(s)	600, 898, 1106, 1172
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	332, 721
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	506, 944, 1172
ApoI	RAATTY	2 cut(s)	81, 164
AspS9I	GGNCC	2 cut(s)	542, 1085
AsuHPI	GGTGA	4 cut(s)	339, 371, 413, 979
AvaII	GGWCC	2 cut(s)	542, 1085
BaeGI	GKGCMC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	1046
BbvI	GCAGC	3 cut(s)	493, 956, 1159
BccI	CCATC	2 cut(s)	212, 704
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciVI	GTATCC	1 cut(s)	428
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	507, 945, 1173
BlsI	GCNGC	3 cut(s)	508, 946, 1174
Bme18I	GGWCC	2 cut(s)	542, 1085
BmgT120I	GGNCC	2 cut(s)	542, 1085
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	166, 782
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	1046
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 1082
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	4 cut(s)	269, 350, 443, 827
BseGI	GGATG	3 cut(s)	527, 773, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	356, 1082
BseMII	CTCAG	4 cut(s)	534, 575, 1060, 1165
BseNI	ACTGG	4 cut(s)	269, 350, 443, 827
BseRI	GAGGAG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	493, 956, 1159
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	401, 538
BslI	CCNNNNNNNGG	2 cut(s)	356, 1082
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	401, 538
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	5 cut(s)	337, 403, 564, 713, 917
BspACI	CCGC	1 cut(s)	1050
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	4 cut(s)	533, 574, 1059, 1164
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	332, 721
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	4 cut(s)	269, 350, 443, 827
BssAI	RCCGGY	1 cut(s)	539
BssMI	GATC	5 cut(s)	337, 403, 564, 713, 917
Bst4CI	ACNGT	8 cut(s)	213, 553, 616, 681, 745, 932, 1005, 1132
BstC8I	GCNNGC	4 cut(s)	13, 308, 537, 598
BstDEI	CTNAG	5 cut(s)	520, 561, 839, 1046, 1151
BstENI	CCTNNNNNAGG	1 cut(s)	1080
BstF5I	GGATG	3 cut(s)	527, 773, 1072
BstKTI	GATC	5 cut(s)	340, 406, 567, 716, 920
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	5 cut(s)	337, 403, 564, 713, 917
BstMWI	GCNNNNNNNGC	3 cut(s)	498, 581, 1172
BstNSI	RCATGY	1 cut(s)	878
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	3 cut(s)	493, 956, 1159
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	670
BtsCI	GGATG	3 cut(s)	527, 773, 1072
BtsIMutI	CAGTG	4 cut(s)	124, 276, 357, 750
Cac8I	GCNNGC	4 cut(s)	13, 308, 537, 598
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	542, 1085
Csp6I	GTAC	3 cut(s)	51, 677, 798
CviAII	CATG	6 cut(s)	283, 335, 572, 722, 875, 949
CviQI	GTAC	3 cut(s)	51, 677, 798
DdeI	CTNAG	5 cut(s)	520, 561, 839, 1046, 1151
DpnI	GATC	5 cut(s)	339, 405, 566, 715, 919
DpnII	GATC	5 cut(s)	337, 403, 564, 713, 917
DraIII	CACNNNGTG	1 cut(s)	1132
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	542, 1085
Eco57I	CTGAAG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	1080
EcoRV	GATATC	1 cut(s)	691
FaeI	CATG	6 cut(s)	286, 338, 575, 725, 878, 952
FaqI	GGGAC	2 cut(s)	401, 538
FatI	CATG	6 cut(s)	282, 334, 571, 721, 874, 948
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	507, 945, 1173
FokI	GGATG	3 cut(s)	514, 760, 1079
Fsp4HI	GCNGC	3 cut(s)	507, 945, 1173
GluI	GCNGC	3 cut(s)	507, 945, 1173
GsuI	CTGGAG	1 cut(s)	981
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	6 cut(s)	286, 338, 575, 725, 878, 952
HincII	GTYRAC	1 cut(s)	928
HindII	GTYRAC	1 cut(s)	928
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	3 cut(s)	486, 518, 826
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	4 cut(s)	339, 371, 413, 979
Hpy166II	GTNNAC	3 cut(s)	727, 928, 1088
Hpy188I	TCNGA	5 cut(s)	564, 581, 639, 753, 765
Hpy188III	TCNNGA	4 cut(s)	161, 242, 418, 998
Hpy8I	GTNNAC	3 cut(s)	727, 928, 1088
HpyAV	CCTTC	4 cut(s)	179, 581, 760, 994
HpyCH4III	ACNGT	8 cut(s)	213, 553, 616, 681, 745, 932, 1005, 1132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	498, 581, 1172
HpyF3I	CTNAG	5 cut(s)	520, 561, 839, 1046, 1151
Hsp92II	CATG	6 cut(s)	286, 338, 575, 725, 878, 952
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	337, 403, 564, 713, 917
LmnI	GCTCC	2 cut(s)	581, 1103
Lsp1109I	GCAGC	3 cut(s)	493, 956, 1159
LweI	GCATC	2 cut(s)	166, 782
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	5 cut(s)	339, 405, 566, 715, 919
MboI	GATC	5 cut(s)	337, 403, 564, 713, 917
MboII	GAAGA	2 cut(s)	927, 1034
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	4 cut(s)	63, 81, 164, 363
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	569
MseI	TTAA	5 cut(s)	132, 153, 203, 870, 1014
MslI	CAYNNNNRTG	4 cut(s)	269, 271, 411, 879
MspA1I	CMGCKG	1 cut(s)	1050
MspI	CCGG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	498, 581, 1172
NdeII	GATC	5 cut(s)	337, 403, 564, 713, 917
NlaIII	CATG	6 cut(s)	286, 338, 575, 725, 878, 952
NlaIV	GGNNCC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	878
OliI	CACNNNNGTG	2 cut(s)	269, 271
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	486, 826
PkrI	GCNGC	3 cut(s)	508, 946, 1174
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	542, 1085
PsrI	GAACNNNNNNTAC	2 cut(s)	993, 1025
PsuI	RGATCY	1 cut(s)	713
RsaI	GTAC	3 cut(s)	52, 678, 799
RsaNI	GTAC	3 cut(s)	51, 677, 798
RseI	CAYNNNNRTG	4 cut(s)	269, 271, 411, 879
SaqAI	TTAA	5 cut(s)	132, 153, 203, 870, 1014
SatI	GCNGC	3 cut(s)	507, 945, 1173
Sau3AI	GATC	5 cut(s)	337, 403, 564, 713, 917
Sau96I	GGNCC	2 cut(s)	542, 1085
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	166, 782
SinI	GGWCC	2 cut(s)	542, 1085
SmiMI	CAYNNNNRTG	4 cut(s)	269, 271, 411, 879
Sse9I	AATT	4 cut(s)	63, 81, 164, 363
SsiI	CCGC	1 cut(s)	1050
TaaI	ACNGT	8 cut(s)	213, 553, 616, 681, 745, 932, 1005, 1132
TaqI	TCGA	1 cut(s)	1137
TasI	AATT	4 cut(s)	63, 81, 164, 363
TatI	WGTACW	2 cut(s)	676, 797
TfiI	GAWTC	2 cut(s)	486, 826
Tru1I	TTAA	5 cut(s)	132, 153, 203, 870, 1014
Tru9I	TTAA	5 cut(s)	132, 153, 203, 870, 1014
TscAI	CASTG	4 cut(s)	124, 276, 357, 750
TseI	GCWGC	3 cut(s)	506, 944, 1172
TspDTI	ATGAA	2 cut(s)	11, 798
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	4 cut(s)	124, 276, 357, 750
VpaK11BI	GGWCC	2 cut(s)	542, 1085
XagI	CCTNNNNNAGG	1 cut(s)	1080
XapI	RAATTY	2 cut(s)	81, 164
XceI	RCATGY	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.