Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Forward (+)

51402297 .. 51406298

Gene Structure 4002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGAAGTTTCTGACCACCCACTTTAATTTACTCAAACCAGAGAGCTCTATGATCATGGCGTTTAAGTGGGTTCTAGTTGCAATATGGATATGGGTTTGGTCAGCTTACTTGGCTGCTACACAATCCGATGATGGGTTACTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTTAGTAGGATAAATGCTGCAAGGATCACCAATAGAGTAGTTTCTCAACACAGAGATAATGGGGATAATCTTAAAGCTAACATTATATATTTGAAGAACTATCTTGACACCCAATTTTATGGAGAAATTGGTATTGGGACTCCCCACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCGCCAATTTTTGGGTCCCGTCTTCGAGATGCATCCTTTCTATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTTTGTCAAGCACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTCTGGCTCCATTTCCGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAATTATCGTTAAGCATCAAGTATAACATGGTGCAACAAGGTCGTATGAGCCAGCAGATTTTCTCTATTTGGCTCAATCATGATCCAAAATCATCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAGGCACTTTACTGGTGATCACACTTATGTCCCAATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGTTCTATTACATTTCCACTCCTTATGGTGTTTAGCTATATTCTTTTCTATGATTCTGCAAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTACTTGCCGACTGTTGTGGCTCAGATCAACCATGCCATCGGTGCAGAAGGATTTGCGAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATTTAGTATCTGGGGTACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCGTATGATGGATCTCGTCATGTAAACAATCGTATTGAGACAGTGGTTCAGAATGGAACTCAGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACTCTGTGTGAGATGATTGCCTATTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCGTTTGTCAACTGTGATAACGTTGCAGCCATGCCAGATGTTTCATTCGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAGGTGTTCTACTGTCTGCCTTAGCGGATTTGTTGCCTTGGATGTGCCTTCTTCACAAGGTCCACTATGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTCGACTTTGGTAATCTCAGGGTAGGATTTGCCAGGGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

496

Amino Acids

55.78

Weight (kDa)

7.98

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	183 - 249	9.4e-16	Eukaryotic aspartyl protease
SapB_2	PF03489	306 - 338	7.5e-10	Saposin-like type B, region 2
SapB_1	PF05184	368 - 405	2.7e-07	Saposin-like type B, region 1
Asp	PF00026	399 - 494	2.8e-19	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	1 cut(s)	1362
AclI	AACGTT	1 cut(s)	1251
AclWI	GGATC	3 cut(s)	203, 602, 1033
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	1444
AfaI	GTAC	3 cut(s)	978, 990, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	132, 359
AgsI	TTSAA	5 cut(s)	265, 750, 1142, 1148, 1334
AjnI	CCWGG	1 cut(s)	1478
AjuI	GAANNNNNNNTTGG	4 cut(s)	288, 320, 624, 656
AluBI	AGCT	7 cut(s)	45, 104, 248, 789, 912, 1210, 1418
AluI	AGCT	7 cut(s)	45, 104, 248, 789, 912, 1210, 1418
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	3 cut(s)	203, 602, 1033
AoxI	GGCC	1 cut(s)	980
ApeKI	GCWGC	4 cut(s)	113, 188, 826, 1256
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	363, 1397
AsuHPI	GGTGA	4 cut(s)	190, 641, 683, 1291
AvaII	GGWCC	2 cut(s)	363, 1397
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	100, 175, 813, 1268
BccI	CCATC	3 cut(s)	125, 896, 1016
BceAI	ACGGC	1 cut(s)	995
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	1480
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	2 cut(s)	51, 673
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	4 cut(s)	114, 189, 827, 1257
BlsI	GCNGC	4 cut(s)	115, 190, 828, 1258
Bme1390I	CCNGG	1 cut(s)	1480
Bme18I	GGWCC	2 cut(s)	363, 1397
BmgT120I	GGNCC	2 cut(s)	363, 1397
BmiI	GGNNCC	3 cut(s)	364, 365, 483
BmrFI	CCNGG	1 cut(s)	1480
BmsI	GCATC	5 cut(s)	169, 367, 389, 549, 1094
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	1293
Bpu10I	CCTNAGC	1 cut(s)	1358
BsaJI	CCNNGG	2 cut(s)	1374, 1479
BsaXI	ACNNNNNCTCC	2 cut(s)	1291, 1321
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 359
Bse1I	ACTGG	3 cut(s)	348, 673, 713
BseBI	CCWGG	1 cut(s)	1480
BseDI	CCNNGG	2 cut(s)	1374, 1479
BseGI	GGATG	5 cut(s)	160, 380, 847, 1085, 1384
BseLI	CCNNNNNNNGG	2 cut(s)	132, 359
BseMII	CTCAG	5 cut(s)	131, 854, 887, 1088, 1477
BseNI	ACTGG	3 cut(s)	348, 673, 713
BseXI	GCAGC	4 cut(s)	100, 175, 813, 1268
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	1 cut(s)	982
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	4 cut(s)	322, 349, 671, 858
BslI	CCNNNNNNNGG	2 cut(s)	132, 359
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	4 cut(s)	322, 349, 671, 858
BsnI	GGCC	1 cut(s)	982
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
BspACI	CCGC	1 cut(s)	1362
BspANI	GGCC	1 cut(s)	982
BspCNI	CTCAG	5 cut(s)	132, 853, 886, 1087, 1476
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	364, 365, 483
BspPI	GGATC	3 cut(s)	203, 602, 1033
BsrI	ACTGG	3 cut(s)	348, 673, 713
BssECI	CCNNGG	2 cut(s)	1374, 1479
BssMI	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
BssT1I	CCWWGG	1 cut(s)	1374
Bst2UI	CCWGG	1 cut(s)	1480
Bst4CI	ACNGT	8 cut(s)	865, 928, 993, 1057, 1244, 1317, 1351, 1444
BstC8I	GCNNGC	3 cut(s)	396, 578, 910
BstDEI	CTNAG	7 cut(s)	140, 840, 873, 1074, 1151, 1358, 1463
BstF5I	GGATG	5 cut(s)	160, 380, 847, 1085, 1384
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	7 cut(s)	54, 198, 610, 676, 879, 1028, 1232
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 818, 893
BstNI	CCWGG	1 cut(s)	1480
BstNSI	RCATGY	1 cut(s)	1190
BstSCI	CCNGG	1 cut(s)	1478
BstV1I	GCAGC	4 cut(s)	100, 175, 813, 1268
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	1025
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	1025
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	1 cut(s)	982
BtsCI	GGATG	5 cut(s)	160, 380, 847, 1085, 1384
BtsIMutI	CAGTG	3 cut(s)	507, 627, 1062
Cac8I	GCNNGC	3 cut(s)	396, 578, 910
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	363, 1397
Csp6I	GTAC	3 cut(s)	977, 989, 1110
CviAII	CATG	7 cut(s)	55, 553, 605, 884, 1034, 1187, 1261
CviQI	GTAC	3 cut(s)	977, 989, 1110
DdeI	CTNAG	7 cut(s)	140, 840, 873, 1074, 1151, 1358, 1463
DpnI	GATC	7 cut(s)	53, 197, 609, 675, 878, 1027, 1231
DpnII	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
DraIII	CACNNNGTG	1 cut(s)	1444
Ecl136II	GAGCTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	1374
Eco24I	GRGCYC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	2 cut(s)	363, 1397
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	1478
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	1374
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	1374
FaeI	CATG	7 cut(s)	58, 556, 608, 887, 1037, 1190, 1264
FaqI	GGGAC	4 cut(s)	322, 349, 671, 858
FatI	CATG	7 cut(s)	54, 552, 604, 883, 1033, 1186, 1260
FbaI	TGATCA	2 cut(s)	51, 673
Fnu4HI	GCNGC	4 cut(s)	114, 189, 827, 1257
FokI	GGATG	5 cut(s)	147, 367, 834, 1072, 1391
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	114, 189, 827, 1257
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	4 cut(s)	114, 189, 827, 1257
GsuI	CTGGAG	1 cut(s)	1293
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	982
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	7 cut(s)	58, 556, 608, 887, 1037, 1190, 1264
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	4 cut(s)	310, 806, 838, 1138
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	4 cut(s)	190, 641, 683, 1291
Hpy166II	GTNNAC	3 cut(s)	1039, 1240, 1400
Hpy188I	TCNGA	6 cut(s)	12, 127, 876, 951, 1065, 1077
Hpy188III	TCNNGA	5 cut(s)	275, 374, 605, 1279, 1310
Hpy8I	GTNNAC	3 cut(s)	1039, 1240, 1400
HpyAV	CCTTC	4 cut(s)	893, 1072, 1306, 1395
HpyCH4III	ACNGT	8 cut(s)	865, 928, 993, 1057, 1244, 1317, 1351, 1444
HpyCH4IV	ACGT	1 cut(s)	1251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 818, 893
HpyF3I	CTNAG	7 cut(s)	140, 840, 873, 1074, 1151, 1358, 1463
HpySE526I	ACGT	1 cut(s)	1251
Hsp92II	CATG	7 cut(s)	58, 556, 608, 887, 1037, 1190, 1264
HspAI	GCGC	1 cut(s)	350
KflI	GGGWCCC	1 cut(s)	363
Ksp22I	TGATCA	2 cut(s)	51, 673
Kzo9I	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
LmnI	GCTCC	2 cut(s)	487, 1415
Lsp1109I	GCAGC	4 cut(s)	100, 175, 813, 1268
LweI	GCATC	5 cut(s)	169, 367, 389, 549, 1094
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	1251
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	7 cut(s)	53, 197, 609, 675, 878, 1027, 1231
MboI	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
MboII	GAAGA	5 cut(s)	277, 362, 1239, 1346, 1380
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	8 cut(s)	25, 284, 297, 354, 446, 464, 527, 690
MlyI	GAGTC	2 cut(s)	304, 832
MnlI	CCTC	8 cut(s)	135, 498, 620, 638, 651, 712, 1075, 1313
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	7 cut(s)	24, 63, 243, 515, 536, 1182, 1326
MslI	CAYNNNNRTG	2 cut(s)	681, 1191
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	1480
MvaI	CCWGG	1 cut(s)	1480
MwoI	GCNNNNNNNGC	3 cut(s)	110, 818, 893
NdeII	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
NlaIII	CATG	7 cut(s)	58, 556, 608, 887, 1037, 1190, 1264
NlaIV	GGNNCC	3 cut(s)	364, 365, 483
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	1190
PagI	TCATGA	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	806, 1138
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	115, 190, 828, 1258
PleI	GAGTC	2 cut(s)	304, 832
PpsI	GAGTC	2 cut(s)	304, 832
PpuMI	RGGWCCY	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	1251
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	1478
PspGI	CCWGG	1 cut(s)	1478
PspN4I	GGNNCC	3 cut(s)	364, 365, 483
PspPI	GGNCC	2 cut(s)	363, 1397
PspPPI	RGGWCCY	1 cut(s)	363
PsrI	GAACNNNNNNTAC	2 cut(s)	1305, 1337
PsuI	RGATCY	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	978, 990, 1111
RsaNI	GTAC	3 cut(s)	977, 989, 1110
RseI	CAYNNNNRTG	2 cut(s)	681, 1191
SacI	GAGCTC	1 cut(s)	47
SaqAI	TTAA	7 cut(s)	24, 63, 243, 515, 536, 1182, 1326
SatI	GCNGC	4 cut(s)	114, 189, 827, 1257
Sau3AI	GATC	7 cut(s)	51, 195, 607, 673, 876, 1025, 1229
Sau96I	GGNCC	2 cut(s)	363, 1397
SchI	GAGTC	2 cut(s)	304, 832
ScrFI	CCNGG	1 cut(s)	1480
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	5 cut(s)	169, 367, 389, 549, 1094
SinI	GGWCC	2 cut(s)	363, 1397
SmiMI	CAYNNNNRTG	2 cut(s)	681, 1191
Sse9I	AATT	8 cut(s)	25, 284, 297, 354, 446, 464, 527, 690
SsiI	CCGC	1 cut(s)	1362
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	1478
StyI	CCWWGG	1 cut(s)	1374
TaaI	ACNGT	8 cut(s)	865, 928, 993, 1057, 1244, 1317, 1351, 1444
TaiI	ACGT	1 cut(s)	1254
TaqI	TCGA	2 cut(s)	373, 1449
TasI	AATT	8 cut(s)	25, 284, 297, 354, 446, 464, 527, 690
TatI	WGTACW	2 cut(s)	988, 1109
TfiI	GAWTC	2 cut(s)	806, 1138
Tru1I	TTAA	7 cut(s)	24, 63, 243, 515, 536, 1182, 1326
Tru9I	TTAA	7 cut(s)	24, 63, 243, 515, 536, 1182, 1326
TscAI	CASTG	3 cut(s)	507, 627, 1062
TseI	GCWGC	4 cut(s)	113, 188, 826, 1256
TspDTI	ATGAA	4 cut(s)	17, 394, 1110, 1263
TspGWI	ACGGA	1 cut(s)	1078
TspRI	CASTG	3 cut(s)	507, 627, 1062
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	363, 1397
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	1190
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.