Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

19179243 .. 19179929

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGTTGTTTGGGCTCAGAATCAGCTGAAACAAAAAGGAACAAAAGAGAAAGTGCTTAGCTACCTTAGTGAGCTTTGCGAGAGCCTCCCAAGTCCAGCAGGAGAATCAATAGTCGAGTGCAGTAGCCTTTCGAGCATGCCAAACGTTACCTTCACCATCGGAGATAAACCTTTCGTTCTCACGCCCGACCAGTATGTTCTGAAAACTGGTGAAGGCGTCGCTGAAGTCTGTATCAGCGGGTTTACAGCGTATGATATCCCTCCTCCAACCGGTCCTCTGTGGATTCTCGGAGATGTATTCATGGGACCGTACCACACGGTTTTCGACTTTGGTGACCTTCAAGTTGGATTTGCCGAAGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

123

Amino Acids

13.12

Weight (kDa)

4.3

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AclI	AACGTT	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	4 cut(s)	28, 63, 76, 362
AluI	AGCT	4 cut(s)	28, 63, 76, 362
ApeKI	GCWGC	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	275, 308
AsuHPI	GGTGA	3 cut(s)	148, 224, 347
AvaII	GGWCC	2 cut(s)	275, 308
BanII	GRGCYC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	363
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	275, 308
BmgT120I	GGNCC	2 cut(s)	275, 308
BmiI	GGNNCC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	193, 214
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	193, 214
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	193, 214
BssAI	RCCGGY	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	312, 322
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	18, 59, 68
BstEII	GGTNACC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 362
BstNSI	RCATGY	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	275, 308
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	2 cut(s)	139, 304
CviJI	RGCY	8 cut(s)	5, 17, 28, 63, 76, 87, 129, 362
CviKI_1	RGCY	8 cut(s)	5, 17, 28, 63, 76, 87, 129, 362
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	18, 59, 68
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	275, 308
Eco57I	CTGAAG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	2 cut(s)	142, 307
FaiI	YATR	4 cut(s)	140, 198, 255, 305
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	138, 303
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	142, 307
HinfI	GANTC	3 cut(s)	22, 107, 286
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	148, 224, 347
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	4 cut(s)	21, 164, 204, 293
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	163, 209, 350
HpyCH4III	ACNGT	2 cut(s)	312, 322
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 362
HpyF3I	CTNAG	3 cut(s)	18, 59, 68
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	142, 307
LpnPI	CCDG	5 cut(s)	87, 111, 195, 206, 286
Lsp1109I	GCAGC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	148, 335
MhlI	GDGCHC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	293, 328
MnlI	CCTC	4 cut(s)	98, 273, 276, 288
MspA1I	CMGCKG	2 cut(s)	28, 240
MspI	CCGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	135, 362
NlaIII	CATG	2 cut(s)	142, 307
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	22, 107, 286
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	364
Psp1406I	AACGTT	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	275, 308
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	275, 308
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	9 cut(s)	30, 65, 69, 78, 150, 155, 175, 342, 364
SinI	GGWCC	2 cut(s)	275, 308
SphI	GCATGC	1 cut(s)	142
SsiI	CCGC	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	312, 322
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	117, 134, 327
TfiI	GAWTC	3 cut(s)	22, 107, 286
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	275, 308
XceI	RCATGY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.