AT4G22050

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
11683815 .. 11685644
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22050.1

Sequence Viewer

Length: 1065 bp
ATGTATACGAGTATATTTTTCATCTTTTCCTTTCTTTCTGTGTCAGAAGCGCTTGTGAGAATCCCGTTGCAGATAGATCATGCCTTGTCAACAAACAATGATGGAGTTCAGTTGAAGAACGTAAAGGACTTTCTGTACTATGGGAAGATCCAAATTGGCAATCCAGGCCAAACTTTCACTGTTCTGTTTGATACCGGAAGTTCTTCCCTTTGGGTCCCGTCAGAAAATTGGCTGGCCAAAACTGAAAACCCTCGCAATCGTTACATATCCAGTGCCTCAAGAACCTTTAAAGAAAATGGAACAAAGGCAGAGCTCAAGTATGGAAAGGGTTCCCTCACGGGTTTCCTAAGTGTTGACACCGTTACGGTTGGTGGGATTAGCATCACGTCACAGACCTTCATAGAGGGCGTTAAGACTCCTTACAAAGAGTTTTTCAAGAAAATGCCGTTTGATGGTATATTGGGACTCAGGTTCACGGACCCGCTCAATTTCGGTACATCTGTTTGGCACTCTATGGTTTTCCAAGGCAAAATTGCAAAAAATGTGTTCTCTATCTGGCTTAGACGGTTTTCTAACTCTGGAGAAATCAACGGTGGAGAGGTAGTATTTGGAGGAATCATCCCAGCGCATTTCTCCGGTGACCATACATACGTTGACGTGGAAGGGCCAGGAAACTTCTTCGCAATGTCCAACATTTGGGTCGGAGGAAAAAACACCAACATTTGCTCCAGTGGCTGCAAAGCTATTGTTGACTCCGGAAGTTCAAATATTAATGTTCCAATGGATTCCGCTGACGAGATCCATAGGTATATCGGAGTAGAACCAAACTGCAATAATTTTGAGACGCTGCCTGATGTCACCTTTACGATCGGCGGAAAGGCCTTCGTCCTCACACCACTTGATTATATACGTCGTTCGCGGAGTCAATGCACGAGTAAATTCGTGGGAAAAACAAATCGTAGCCACTGGACATTGGGCATCCCATTCATGCGAGTCTTTCACACTGTTTTTGATTACCAGAACACACTTGCAGTGAAAGTTGGGTTCGCTAAGTCGACTGATTAG

Protein Analysis

354

Amino Acids

39.23

Weight (kDa)

8.89

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 46 - 351 3.9e-74 Eukaryotic aspartyl protease
TAXi_N PF14543 46 - 204 2.1e-09 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 696
AccBSI CCGCTC 1 cut(s) 484
AccI GTMKAC 2 cut(s) 5, 1055
AccII CGCG 1 cut(s) 919
AccIII TCCGGA 1 cut(s) 755
AciI CCGC 4 cut(s) 482, 789, 873, 919
AclWI GGATC 2 cut(s) 142, 793
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 938
AfaI GTAC 2 cut(s) 137, 496
AfeI AGCGCT 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 452, 696
AgsI TTSAA 3 cut(s) 115, 436, 765
AjiI CACGTC 2 cut(s) 387, 658
AjnI CCWGG 2 cut(s) 163, 667
AluBI AGCT 2 cut(s) 313, 743
AluI AGCT 2 cut(s) 313, 743
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 836
AlwI GGATC 2 cut(s) 142, 793
AlwNI CAGNNNCTG 1 cut(s) 735
Aor13HI TCCGGA 1 cut(s) 755
Aor51HI AGCGCT 1 cut(s) 51
AoxI GGCC 4 cut(s) 166, 234, 665, 879
ApeKI GCWGC 2 cut(s) 735, 847
ApoI RAATTY 1 cut(s) 938
AseI ATTAAT 1 cut(s) 771
Asp700I GAANNNNTTC 2 cut(s) 202, 328
AspLEI GCGC 2 cut(s) 52, 628
AspS9I GGNCC 3 cut(s) 214, 478, 665
AsuHPI GGTGA 2 cut(s) 650, 850
AvaII GGWCC 2 cut(s) 214, 478
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BalI TGGCCA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 931
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 722, 834
BccI CCATC 2 cut(s) 95, 446
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 165, 669
BcoDI GTCTC 1 cut(s) 836
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 2 cut(s) 736, 848
BlsI GCNGC 2 cut(s) 737, 849
Bme1390I CCNGG 2 cut(s) 165, 669
Bme18I GGWCC 2 cut(s) 214, 478
BmgBI CACGTC 2 cut(s) 387, 658
BmgT120I GGNCC 3 cut(s) 214, 478, 665
BmiI GGNNCC 4 cut(s) 215, 216, 331, 480
BmrFI CCNGG 2 cut(s) 165, 669
BmsI GCATC 2 cut(s) 390, 987
BpmI CTGGAG 2 cut(s) 600, 712
BpuEI CTTGAG 2 cut(s) 262, 299
BsaBI GATNNNNATC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 523
BsaWI WCCGGW 3 cut(s) 194, 635, 755
BsaXI ACNNNNNCTCC 4 cut(s) 588, 618, 710, 740
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 696
Bse1I ACTGG 3 cut(s) 270, 729, 971
Bse3DI GCAATG 1 cut(s) 690
Bse8I GATNNNNATC 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 755
BseBI CCWGG 2 cut(s) 165, 669
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 2 cut(s) 618, 978
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 452, 696
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 3 cut(s) 270, 729, 971
BseXI GCAGC 2 cut(s) 722, 834
BseYI CCCAGC 1 cut(s) 622
Bsh1236I CGCG 1 cut(s) 919
Bsh1285I CGRYCG 1 cut(s) 870
BshFI GGCC 4 cut(s) 168, 236, 667, 881
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 3 cut(s) 195, 636, 756
BslFI GGGAC 2 cut(s) 200, 477
BslI CCNNNNNNNGG 2 cut(s) 452, 696
BsmAI GTCTC 1 cut(s) 836
BsmBI CGTCTC 1 cut(s) 836
BsmFI GGGAC 2 cut(s) 200, 477
BsnI GGCC 4 cut(s) 168, 236, 667, 881
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 755
Bsp143I GATC 4 cut(s) 76, 147, 798, 867
BspACI CCGC 4 cut(s) 482, 789, 873, 919
BspANI GGCC 4 cut(s) 168, 236, 667, 881
BspCNI CTCAG 1 cut(s) 480
BspEI TCCGGA 1 cut(s) 755
BspFNI CGCG 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 215, 216, 331, 480
BspPI GGATC 2 cut(s) 142, 793
BsrBI CCGCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 3 cut(s) 270, 729, 971
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 4 cut(s) 76, 147, 798, 867
BssNAI GTATAC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 931
BssT1I CCWWGG 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 931
Bst2UI CCWGG 2 cut(s) 165, 669
Bst4CI ACNGT 6 cut(s) 181, 361, 367, 567, 593, 1006
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 4 cut(s) 347, 467, 560, 1050
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 2 cut(s) 618, 978
BstFNI CGCG 1 cut(s) 919
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 628
BstKTI GATC 4 cut(s) 79, 150, 801, 870
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 4 cut(s) 76, 147, 798, 867
BstMCI CGRYCG 1 cut(s) 870
BstMWI GCNNNNNNNGC 2 cut(s) 165, 732
BstNI CCWGG 2 cut(s) 165, 669
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 163, 667
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 722, 834
BstX2I RGATCY 2 cut(s) 147, 798
BstYI RGATCY 2 cut(s) 147, 798
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 4 cut(s) 168, 236, 667, 881
BtrI CACGTC 2 cut(s) 387, 658
BtsCI GGATG 2 cut(s) 618, 978
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 6 cut(s) 177, 277, 736, 964, 1002, 1038
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 735
CfoI GCGC 2 cut(s) 52, 628
Cfr13I GGNCC 3 cut(s) 214, 478, 665
CseI GACGC 1 cut(s) 853
Csp6I GTAC 2 cut(s) 136, 495
CviAII CATG 2 cut(s) 80, 988
CviQI GTAC 2 cut(s) 136, 495
DdeI CTNAG 4 cut(s) 347, 467, 560, 1050
DpnI GATC 4 cut(s) 78, 149, 800, 869
DpnII GATC 4 cut(s) 76, 147, 798, 867
DraI TTTAAA 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 234
EciI GGCGGA 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 523
Eco147I AGGCCT 1 cut(s) 881
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 214, 478
Eco47III AGCGCT 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 313
Eco91I GGTNACC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 163, 667
EcoT14I CCWWGG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 523
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 2 cut(s) 83, 991
FaqI GGGAC 2 cut(s) 200, 477
FatI CATG 2 cut(s) 79, 987
FauI CCCGC 1 cut(s) 489
FblI GTMKAC 2 cut(s) 5, 1055
Fnu4HI GCNGC 2 cut(s) 736, 848
FokI GGATG 2 cut(s) 605, 965
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 736, 848
GlaI GCGC 2 cut(s) 51, 627
GluI GCNGC 2 cut(s) 736, 848
GsaI CCCAGC 1 cut(s) 626
GsuI CTGGAG 2 cut(s) 600, 712
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 4 cut(s) 168, 236, 667, 881
HapII CCGG 3 cut(s) 195, 636, 756
HgaI GACGC 1 cut(s) 853
HhaI GCGC 2 cut(s) 52, 628
Hin1II CATG 2 cut(s) 83, 991
Hin6I GCGC 2 cut(s) 50, 626
HinP1I GCGC 2 cut(s) 50, 626
HincII GTYRAC 5 cut(s) 90, 355, 655, 751, 1056
HindII GTYRAC 5 cut(s) 90, 355, 655, 751, 1056
HinfI GANTC 8 cut(s) 60, 415, 465, 615, 752, 785, 922, 993
HpaII CCGG 3 cut(s) 195, 636, 756
HphI GGTGA 2 cut(s) 650, 850
Hpy166II GTNNAC 7 cut(s) 6, 90, 355, 474, 655, 751, 1056
Hpy188I TCNGA 4 cut(s) 46, 223, 704, 815
Hpy188III TCNNGA 4 cut(s) 279, 436, 579, 756
Hpy8I GTNNAC 7 cut(s) 6, 90, 355, 474, 655, 751, 1056
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 3 cut(s) 406, 656, 892
HpyCH4III ACNGT 6 cut(s) 181, 361, 367, 567, 593, 1006
HpyCH4IV ACGT 5 cut(s) 120, 386, 651, 657, 910
HpyCH4V TGCA 6 cut(s) 70, 536, 738, 831, 930, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 732
HpyF3I CTNAG 4 cut(s) 347, 467, 560, 1050
HpySE526I ACGT 5 cut(s) 120, 386, 651, 657, 910
Hsp92II CATG 2 cut(s) 83, 991
HspAI GCGC 2 cut(s) 50, 626
KflI GGGWCCC 1 cut(s) 214
Kpn2I TCCGGA 1 cut(s) 755
Kzo9I GATC 4 cut(s) 76, 147, 798, 867
LmnI GCTCC 1 cut(s) 731
Lsp1109I GCAGC 2 cut(s) 722, 834
LweI GCATC 2 cut(s) 390, 987
MaeII ACGT 5 cut(s) 120, 386, 651, 657, 910
MaeIII GTNAC 5 cut(s) 260, 361, 387, 638, 856
MalI GATC 4 cut(s) 78, 149, 800, 869
MbiI CCGCTC 1 cut(s) 484
MboI GATC 4 cut(s) 76, 147, 798, 867
MboII GAAGA 4 cut(s) 127, 157, 195, 670
MflI RGATCY 2 cut(s) 147, 798
MhlI GDGCHC 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 6 cut(s) 153, 226, 487, 531, 835, 938
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 5 cut(s) 409, 459, 746, 931, 1002
MmeI TCCRAC 2 cut(s) 682, 714
MnlI CCTC 8 cut(s) 261, 286, 344, 397, 592, 605, 698, 899
Mox20I TGGCCA 1 cut(s) 236
MroI TCCGGA 1 cut(s) 755
MroXI GAANNNNTTC 2 cut(s) 202, 328
MscI TGGCCA 1 cut(s) 236
MseI TTAA 3 cut(s) 288, 411, 771
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 3 cut(s) 195, 636, 756
MspR9I CCNGG 2 cut(s) 165, 669
MvaI CCWGG 2 cut(s) 165, 669
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 2 cut(s) 165, 732
NdeII GATC 4 cut(s) 76, 147, 798, 867
NlaIII CATG 2 cut(s) 83, 991
NlaIV GGNNCC 4 cut(s) 215, 216, 331, 480
NmuCI GTSAC 3 cut(s) 387, 638, 856
PceI AGGCCT 1 cut(s) 881
PdmI GAANNNNTTC 2 cut(s) 202, 328
PfeI GAWTC 3 cut(s) 60, 615, 785
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 2 cut(s) 737, 849
Ple19I CGATCG 1 cut(s) 870
PleI GAGTC 5 cut(s) 409, 459, 746, 930, 1001
PpsI GAGTC 5 cut(s) 409, 459, 746, 930, 1001
PpuMI RGGWCCY 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 771
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 163, 667
PspEI GGTNACC 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 2 cut(s) 163, 667
PspN4I GGNNCC 4 cut(s) 215, 216, 331, 480
PspPI GGNCC 3 cut(s) 214, 478, 665
PspPPI RGGWCCY 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 147, 798
PvuI CGATCG 1 cut(s) 870
RsaI GTAC 2 cut(s) 137, 496
RsaNI GTAC 2 cut(s) 136, 495
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 1054
SaqAI TTAA 3 cut(s) 288, 411, 771
SatI GCNGC 2 cut(s) 736, 848
Sau3AI GATC 4 cut(s) 76, 147, 798, 867
Sau96I GGNCC 3 cut(s) 214, 478, 665
SchI GAGTC 5 cut(s) 409, 459, 746, 931, 1002
ScrFI CCNGG 2 cut(s) 165, 669
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 2 cut(s) 390, 987
SinI GGWCC 2 cut(s) 214, 478
SmlI CTYRAG 2 cut(s) 277, 314
SmoI CTYRAG 2 cut(s) 277, 314
Sse9I AATT 6 cut(s) 153, 226, 487, 531, 835, 938
SseBI AGGCCT 1 cut(s) 881
SsiI CCGC 4 cut(s) 482, 789, 873, 919
SspI AATATT 1 cut(s) 769
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 881
StyD4I CCNGG 2 cut(s) 163, 667
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 6 cut(s) 181, 361, 367, 567, 593, 1006
TaiI ACGT 5 cut(s) 123, 389, 654, 660, 913
TaqI TCGA 1 cut(s) 1055
TasI AATT 6 cut(s) 153, 226, 487, 531, 835, 938
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 3 cut(s) 60, 615, 785
Tru1I TTAA 3 cut(s) 288, 411, 771
Tru9I TTAA 3 cut(s) 288, 411, 771
TscAI CASTG 6 cut(s) 184, 277, 736, 971, 1009, 1038
TseFI GTSAC 3 cut(s) 387, 638, 856
TseI GCWGC 2 cut(s) 735, 847
Tsp45I GTSAC 3 cut(s) 387, 638, 856
TspDTI ATGAA 3 cut(s) 10, 388, 976
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 6 cut(s) 184, 277, 736, 971, 1009, 1038
Van91I CCANNNNNTGG 1 cut(s) 696
VpaK11BI GGWCC 2 cut(s) 214, 478
VspI ATTAAT 1 cut(s) 771
XapI RAATTY 1 cut(s) 938
XmiI GTMKAC 2 cut(s) 5, 1055
XmnI GAANNNNTTC 2 cut(s) 202, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.