FvH4_6g08490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009550
Physical Location & Seq
Reverse (-)
5030156 .. 5032822
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08490.t5

Sequence Viewer

Length: 396 bp
ATGATTCCTACTCCATTTTCAGTTCGCTTTCTAACTCATTCTCAGAGTCGCCCAAAGGGCTTGTTTGGCACAGAAGTGCAGAGTTATAGCAAAAAGTTATTAAAGATGGCATTGAGGCGCTACTTGGGGTTTTCAGATGGTGAGCTGATGAGGTCAGATTGCAAACCGTGTTCCAGATTGATGAGACAGACTGCCGGGATTTTCACAGTTGGAGGGGCATTTGGATTCTGGATTCTTTGTAGATTGCATTATGGTCCCAGAATTACAGTCCCTAGAGCTCTTCGGTGGGGAGCTTGTGGAGCTTTATCTGTGAGCTCGTCCACTGCTTTGTTAGTTCGCTTGCTTAGTCCAGAATGCGAGCCCCAAAACATAGAAACTTACGACAAGGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.65

Weight (kDa)

9.98

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7875 PF25285 1 - 95 2.3e-53 Domain of unknown function (DUF7875)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 5 cut(s) 145, 278, 293, 302, 315
AluI AGCT 5 cut(s) 145, 278, 293, 302, 315
Alw21I GWGCWC 2 cut(s) 280, 317
Alw26I GTCTC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 254
BanII GRGCYC 3 cut(s) 280, 317, 363
Bbv12I GWGCWC 2 cut(s) 280, 317
BccI CCATC 2 cut(s) 100, 131
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 280, 317
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 240, 254
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 240, 254
BsmI GAATGC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 280, 317, 363
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 168, 208, 268
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 341, 359
BstDEI CTNAG 2 cut(s) 42, 344
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 57, 66, 299
BstSCI CCNGG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 341, 359
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 254
CviJI RGCY 7 cut(s) 60, 145, 278, 293, 302, 315, 361
CviKI_1 RGCY 7 cut(s) 60, 145, 278, 293, 302, 315, 361
DdeI CTNAG 2 cut(s) 42, 344
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 2 cut(s) 278, 315
Eco24I GRGCYC 3 cut(s) 280, 317, 363
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 2 cut(s) 278, 315
EcoICRI GAGCTC 2 cut(s) 278, 315
EcoT38I GRGCYC 3 cut(s) 280, 317, 363
FaiI YATR 3 cut(s) 87, 252, 371
FaqI GGGAC 2 cut(s) 240, 254
FriOI GRGCYC 3 cut(s) 280, 317, 363
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 121
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 120
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 4 cut(s) 4, 46, 225, 232
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 45, 136, 157
Hpy188III TCNNGA 3 cut(s) 174, 229, 350
Hpy8I GTNNAC 1 cut(s) 321
HpyCH4III ACNGT 3 cut(s) 168, 208, 268
HpyCH4V TGCA 3 cut(s) 79, 162, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 66, 299
HpyF3I CTNAG 2 cut(s) 42, 344
HspAI GCGC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 2 cut(s) 290, 299
LpnPI CCDG 5 cut(s) 187, 208, 214, 271, 363
MaeI CTAG 1 cut(s) 273
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 3 cut(s) 280, 317, 363
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 3 cut(s) 108, 144, 206
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 57, 66, 299
NciI CCSGG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 256
OliI CACNNNNGTG 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 4, 225, 232
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp124BI GAGCTC 2 cut(s) 280, 317
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 2 cut(s) 280, 317
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 3 cut(s) 280, 317, 363
SetI ASST 6 cut(s) 147, 155, 280, 295, 304, 317
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 2 cut(s) 280, 317
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 168, 208, 268
TasI AATT 1 cut(s) 261
TfiI GAWTC 3 cut(s) 4, 225, 232
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 328
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 254
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.