Rh3AG087800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009550
Physical Location & Seq
Reverse (-)
7077605 .. 7080917
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG087800.1

Sequence Viewer

Length: 291 bp
ATGGCATTGAGGCGCTACTTGGGGTTTTCAGATGGCGAGCTGATGAGGTCTGATTGCAAACCTTGTTCCAGATTGATGAGACAGACTGCCGGGATTTTCACAGTTGGAGGAGGATTAGCATTCTGGATTCTTTGTAGATTGCATTATGGTCCCAGAATTACAGTTCCTAGGGCTCTTCGGTGGGGAGCTTGTGGAGCTTTATCTGTGAGCTCGTCCACTGCTCTGCTGGTACGCCTGCTTAGTCCAGAATGTGAGCCCCAAAACATAGAAACTTATGACAAGGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

9.44

Isoelectric Point (pI)

67.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7875 PF25285 1 - 95 2.9e-53 Domain of unknown function (DUF7875)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 231
AluBI AGCT 4 cut(s) 40, 188, 197, 210
AluI AGCT 4 cut(s) 40, 188, 197, 210
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 73
AspA2I CCTAGG 1 cut(s) 167
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 91
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 167
BanII GRGCYC 3 cut(s) 175, 212, 258
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 16
BlnI CCTAGG 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 119
Bsp1286I GDGCHC 3 cut(s) 175, 212, 258
BspLI GGNNCC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 103, 163
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 38, 236
BstDEI CTNAG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 38, 236
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 230
CviJI RGCY 6 cut(s) 40, 173, 188, 197, 210, 256
CviKI_1 RGCY 6 cut(s) 40, 173, 188, 197, 210, 256
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 3 cut(s) 175, 212, 258
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 3 cut(s) 175, 212, 258
ErhI CCWWGG 1 cut(s) 167
FaiI YATR 3 cut(s) 147, 266, 276
FaqI GGGAC 1 cut(s) 135
FriOI GRGCYC 3 cut(s) 175, 212, 258
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 16
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 31, 52
Hpy188III TCNNGA 3 cut(s) 69, 124, 245
Hpy8I GTNNAC 1 cut(s) 216
HpyCH4III ACNGT 2 cut(s) 103, 163
HpyCH4V TGCA 2 cut(s) 57, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 239
HspAI GCGC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 185, 194
LpnPI CCDG 7 cut(s) 82, 103, 109, 166, 212, 248, 258
MaeI CTAG 1 cut(s) 168
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 3 cut(s) 175, 212, 258
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 3, 39, 101, 104
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 180
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 3 cut(s) 175, 212, 258
SetI ASST 6 cut(s) 42, 50, 64, 190, 199, 212
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 103, 163
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 223
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.