AT1G58320

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016501
Physical Location & Seq
Reverse (-)
21633858 .. 21635344
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58320.1

Sequence Viewer

Length: 447 bp
ATGTCCGAACAAGAAGGCAAAAATGAGAAGAAAGTAACTGAAGGGCAATGGACTACCGGTTTATACGACTGTCTCTCTGAAGATATCTCTACATGCTGCTTTACATGGGTTTGTCCTTGCGTTGCATTTGGGAGGATCGCTGAGATCCTTGATAAAGGAGAAACAAGTCGAGGACTTGCTGGATTAATGGTGGTCGCAATGTCTAGCATTGGGTGTGGATGGTACTATGCTTCAAAATACAGAGCCAAATTGAGGCATCAATACGCTTTGCCCGAGGCGCCTTGTGCCGATGGCGCCATTCACTGCTTCTGCTGTCCATGTGCTCTTACTCAAGAACACCGCGAACTCAAACATCGAGGTCTTGATCCCTCTCTAGGGTGGAACATTGAGAATGGAGGATTAAACAGCAACACGCCCCCGTTTGTAGCGTCAGGCATGGACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

148

Amino Acids

16.26

Weight (kDa)

5.78

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 17 - 115 1.8e-30 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58320
fragaria_vesca FvH4_4g27730
prunus_persica Prupe.1G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435591
rosa_laevigata RLG00000006579
rosa_multiflora Rmu_sc0001940.1_g000048 Rmu_sc0006697.1_g000001
rosa_roxburghii Rroxscaffold_5G00376820
rosa_rugosa Rorug04G0286900
rosa_samantha Rh4AG342300 Rh4BG350500 Rh4CG365200 Rh4DG344900
rosa_wichuraiana Rw4G029860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 293
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 340
AclWI GGATC 3 cut(s) 139, 143, 359
AcuI CTGAAG 2 cut(s) 60, 99
AcyI GRCGYC 2 cut(s) 278, 294
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 252, 374, 375
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 3 cut(s) 139, 143, 359
Ama87I CYCGRG 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 96
AseI ATTAAT 1 cut(s) 185
AsiGI ACCGGT 1 cut(s) 56
AspLEI GCGC 2 cut(s) 280, 296
AspS9I GGNCC 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 2 cut(s) 277, 293
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 213, 284
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 204, 374
BfoI RGCGCY 2 cut(s) 281, 297
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 279, 295
BmsI GCATC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 278, 294
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 374, 375
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 53, 204
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 3 cut(s) 252, 374, 375
BseMI GCAATG 2 cut(s) 53, 204
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 342
BshNI GGYRCC 2 cut(s) 277, 293
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 252, 374, 375
BsmAI GTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 135, 144, 364
BspACI CCGC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 279, 295
BspPI GGATC 3 cut(s) 139, 143, 359
BspT107I GGYRCC 2 cut(s) 277, 293
BsrDI GCAATG 2 cut(s) 53, 204
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 135, 144, 364
BssNI GRCGYC 2 cut(s) 278, 294
Bst4CI ACNGT 2 cut(s) 71, 443
BstACI GRCGYC 2 cut(s) 278, 294
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 342
BstH2I RGCGCY 2 cut(s) 281, 297
BstHHI GCGC 2 cut(s) 280, 296
BstKTI GATC 3 cut(s) 138, 147, 367
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 135, 144, 364
BstMWI GCNNNNNNNGC 3 cut(s) 277, 284, 293
BstNSI RCATGY 1 cut(s) 96
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BtsCI GGATG 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 280, 296
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 223
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 4 cut(s) 93, 105, 318, 436
CviJI RGCY 1 cut(s) 245
CviKI_1 RGCY 1 cut(s) 245
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 141
DinI GGCGCC 2 cut(s) 279, 295
DpnI GATC 3 cut(s) 137, 146, 366
DpnII GATC 3 cut(s) 135, 144, 364
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 2 cut(s) 60, 99
Eco88I CYCGRG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 85
EgeI GGCGCC 2 cut(s) 279, 295
EheI GGCGCC 2 cut(s) 279, 295
FaeI CATG 4 cut(s) 96, 108, 321, 439
FaiI YATR 6 cut(s) 64, 94, 106, 228, 319, 437
FatI CATG 4 cut(s) 92, 104, 317, 435
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 204, 374
GlaI GCGC 2 cut(s) 279, 295
GluI GCNGC 1 cut(s) 97
HaeII RGCGCY 2 cut(s) 281, 297
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 417
HhaI GCGC 2 cut(s) 280, 296
Hin1I GRCGYC 2 cut(s) 278, 294
Hin1II CATG 4 cut(s) 96, 108, 321, 439
Hin6I GCGC 2 cut(s) 278, 294
HinP1I GCGC 2 cut(s) 278, 294
HpaII CCGG 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 7, 79
Hpy188III TCNNGA 2 cut(s) 332, 362
HpyAV CCTTC 2 cut(s) 8, 35
HpyCH4III ACNGT 2 cut(s) 71, 443
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 284, 293
HpyF3I CTNAG 1 cut(s) 141
Hsp92I GRCGYC 2 cut(s) 278, 294
Hsp92II CATG 4 cut(s) 96, 108, 321, 439
HspAI GCGC 2 cut(s) 278, 294
KasI GGCGCC 2 cut(s) 277, 293
Kzo9I GATC 3 cut(s) 135, 144, 364
LpnPI CCDG 3 cut(s) 70, 165, 417
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 204, 374
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 137, 146, 366
MboI GATC 3 cut(s) 135, 144, 364
MboII GAAGA 2 cut(s) 40, 92
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 248
Mly113I GGCGCC 2 cut(s) 278, 294
MnlI CCTC 7 cut(s) 126, 164, 246, 268, 350, 379, 389
MseI TTAA 3 cut(s) 185, 401, 445
MspI CCGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 277, 284, 293
NarI GGCGCC 2 cut(s) 278, 294
NdeII GATC 3 cut(s) 135, 144, 364
NlaIII CATG 4 cut(s) 96, 108, 321, 439
NlaIV GGNNCC 2 cut(s) 279, 295
NspI RCATGY 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 1 cut(s) 98
PluTI GGCGCC 2 cut(s) 281, 297
PshBI ATTAAT 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 279, 295
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 185, 401, 445
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 135, 144, 364
Sau96I GGNCC 1 cut(s) 439
SduI GDGCHC 1 cut(s) 325
SetI ASST 1 cut(s) 361
SfaNI GCATC 1 cut(s) 265
SfoI GGCGCC 2 cut(s) 279, 295
SinI GGWCC 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 1 cut(s) 248
SsiI CCGC 1 cut(s) 340
SspDI GGCGCC 2 cut(s) 277, 293
SspMI CTAG 2 cut(s) 204, 374
TaaI ACNGT 2 cut(s) 71, 443
TaqI TCGA 2 cut(s) 169, 355
TasI AATT 1 cut(s) 248
Tru1I TTAA 3 cut(s) 185, 401, 445
Tru9I TTAA 3 cut(s) 185, 401, 445
TscAI CASTG 1 cut(s) 308
TseI GCWGC 1 cut(s) 96
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 439
VspI ATTAAT 1 cut(s) 185
XceI RCATGY 1 cut(s) 96
XspI CTAG 2 cut(s) 204, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.