Rorug04G0286900

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016501
Physical Location & Seq
Forward (+)
46020842 .. 46021839
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0286900.1

Sequence Viewer

Length: 390 bp
ATGGCGAATTTTGTGAATCCCGAGAATGCGTTGAAGCGAGCAGAAGAGTTGATCAATGTTGGGCAGAAGCAAGAGGCATTGCAATCTCTTCATAATGTTATCACCTCAAAGAGGTCTAGAGGATGGCAAAAACCACTTGAAAGGTTTATGTTTAAATATGTAGAGCTTTGCGTTGAGTTGCGCAAGGGTATTTTTGCCAAGGATGGTCTGATTAAGTACCGCAATAGATGTCAACAAGTAAATGATAGCTCCTTGGAAGAGGTCATCAAGCACTTCATGAATCTATCTACTCAGAAAGCTGAGCAGGCTGGTACTCTGGAAGAAGCAGTTAATGTTGATGAACTCGAAGCAGATAAGAGTCCCGAAGATATGATGTTGGGCTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

129

Amino Acids

14.85

Weight (kDa)

5.76

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3a_PCI_TPR-like PF22591 8 - 120 5.4e-35 eIF3a, PCI domain, TPR-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58320
fragaria_vesca FvH4_4g27730
prunus_persica Prupe.1G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435591
rosa_laevigata RLG00000006579
rosa_multiflora Rmu_sc0001940.1_g000048 Rmu_sc0006697.1_g000001
rosa_roxburghii Rroxscaffold_5G00376820
rosa_rugosa Rorug04G0286900
rosa_samantha Rh4AG342300 Rh4BG350500 Rh4CG365200 Rh4DG344900
rosa_wichuraiana Rw4G029860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 182
AciI CCGC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 218, 313
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 34, 140
AluBI AGCT 3 cut(s) 166, 249, 299
AluI AGCT 3 cut(s) 166, 249, 299
Ama87I CYCGRG 1 cut(s) 20
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 20
BccI CCATC 2 cut(s) 117, 197
BclI TGATCA 1 cut(s) 51
BfaI CTAG 1 cut(s) 117
BlpI GCTNAGC 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 198, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 198, 252
BseGI GGATG 2 cut(s) 128, 208
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 291, 305
BsiHKCI CYCGRG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 51
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 292, 304
BspHI TCATGA 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 198, 252
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 198, 252
Bst6I CTCTTC 3 cut(s) 39, 93, 252
BstC8I GCNNGC 2 cut(s) 39, 306
BstDEI CTNAG 2 cut(s) 291, 300
BstENI CCTNNNNNAGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 128, 208
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 128, 208
Cac8I GCNNGC 2 cut(s) 39, 306
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 217, 312
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 166, 249, 299, 308, 381
CviKI_1 RGCY 5 cut(s) 166, 249, 299, 308, 381
CviQI GTAC 2 cut(s) 217, 312
DdeI CTNAG 2 cut(s) 291, 300
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraI TTTAAA 1 cut(s) 154
Eam1104I CTCTTC 3 cut(s) 39, 93, 252
EarI CTCTTC 3 cut(s) 39, 93, 252
Eco130I CCWWGG 2 cut(s) 198, 252
Eco88I CYCGRG 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 198, 252
ErhI CCWWGG 2 cut(s) 198, 252
FaeI CATG 1 cut(s) 280
FaiI YATR 6 cut(s) 93, 149, 159, 278, 371, 384
FaqI GGGAC 1 cut(s) 345
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 51
FokI GGATG 2 cut(s) 135, 215
FspBI CTAG 1 cut(s) 117
FspI TGCGCA 1 cut(s) 182
GlaI GCGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 3 cut(s) 16, 280, 358
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 210, 294
Hpy188III TCNNGA 5 cut(s) 20, 117, 277, 317, 362
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 291, 300
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 290, 294, 302
MaeI CTAG 1 cut(s) 117
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 5 cut(s) 56, 80, 269, 332, 377
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 5 cut(s) 67, 105, 113, 115, 253
MseI TTAA 3 cut(s) 153, 213, 330
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 182
PagI TCATGA 1 cut(s) 276
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 16, 280
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
RsaI GTAC 2 cut(s) 218, 313
RsaNI GTAC 2 cut(s) 217, 312
SaqAI TTAA 3 cut(s) 153, 213, 330
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 367
SetI ASST 7 cut(s) 107, 116, 146, 168, 251, 264, 301
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 117
StyI CCWWGG 2 cut(s) 198, 252
TaqI TCGA 1 cut(s) 345
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 16, 280
Tru1I TTAA 3 cut(s) 153, 213, 330
Tru9I TTAA 3 cut(s) 153, 213, 330
TspDTI ATGAA 4 cut(s) 80, 265, 293, 354
XagI CCTNNNNNAGG 1 cut(s) 109
XapI RAATTY 1 cut(s) 7
XbaI TCTAGA 1 cut(s) 116
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.