Rh4BG350500

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016501
Physical Location & Seq
Forward (+)
51188749 .. 51190034
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG350500.1

Sequence Viewer

Length: 471 bp
ATGAGTTCAGACAACTCCACCCGAAACTGCGATATGGCTCAATCCGAAAAGCAACCTCCCCAAGGACAATGGTCCACTGGCCTTTTCGATTGTTTGGAGGATCGTTCAAATTGTCTTTTCACTTGCTTTTGTCCATGCATGGCCTTTGGACGAATTGCGGAGATTGTTGACAGAGGAACTACATCATGTGCGGTCGCCGGCACGATCTACCATGTTCTGGCCTCTGTAGGCTGTGGATGGCTTTATGCTGGTTCGTATAGAACCAAACTGCGAGGACACTTCTCACTACCAGCAGCGCCATGCCATGATCTTTTGGTTCATAGCTTCTGCTGTGTTTGTTCTATTTGTCAAGAGTATAGAGAACTCAAAAATCATGGAATTGATCCCTCCATTGGGTGGCAAGCCAATGTTGAGAAGTGGAACCGAGAAGGAGTGAAGCCTCCGATGGTCGAACCAGCAATGGCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

156

Amino Acids

17.27

Weight (kDa)

6.49

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 24 - 121 1.6e-30 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58320
fragaria_vesca FvH4_4g27730
prunus_persica Prupe.1G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435591
rosa_laevigata RLG00000006579
rosa_multiflora Rmu_sc0001940.1_g000048 Rmu_sc0006697.1_g000001
rosa_roxburghii Rroxscaffold_5G00376820
rosa_rugosa Rorug04G0286900
rosa_samantha Rh4AG342300 Rh4BG350500 Rh4CG365200 Rh4DG344900
rosa_wichuraiana Rw4G029860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 217, 396
AciI CCGC 2 cut(s) 158, 191
AclWI GGATC 2 cut(s) 108, 377
AfiI CCNNNNNNNGG 5 cut(s) 62, 217, 392, 393, 396
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
AlwI GGATC 2 cut(s) 108, 377
AoxI GGCC 4 cut(s) 79, 141, 219, 462
ApeKI GCWGC 1 cut(s) 293
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 72, 463
AvaII GGWCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 305
BccI CCATC 2 cut(s) 231, 439
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 72, 463
BmiI GGNNCC 1 cut(s) 422
BoxI GACNNNNGTC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 217, 392, 393, 396
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 5 cut(s) 62, 217, 392, 393, 396
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 4 cut(s) 81, 143, 221, 464
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 5 cut(s) 62, 217, 392, 393, 396
BsnI GGCC 4 cut(s) 81, 143, 221, 464
Bsp143I GATC 4 cut(s) 100, 204, 307, 382
BspACI CCGC 2 cut(s) 158, 191
BspANI GGCC 4 cut(s) 81, 143, 221, 464
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 2 cut(s) 108, 377
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 4 cut(s) 100, 204, 307, 382
BssT1I CCWWGG 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 199, 402
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 4 cut(s) 103, 207, 310, 385
BstMBI GATC 4 cut(s) 100, 204, 307, 382
BstMCI CGRYCG 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 305
BsuRI GGCC 4 cut(s) 81, 143, 221, 464
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 199, 402
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 72, 463
CviAII CATG 7 cut(s) 135, 139, 186, 212, 300, 305, 374
DpnI GATC 4 cut(s) 102, 206, 309, 384
DpnII GATC 4 cut(s) 100, 204, 307, 382
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 72
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 7 cut(s) 138, 142, 189, 215, 303, 308, 377
FatI CATG 7 cut(s) 134, 138, 185, 211, 299, 304, 373
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 294
GlaI GCGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 4 cut(s) 81, 143, 221, 464
HapII CCGG 1 cut(s) 198
HhaI GCGC 1 cut(s) 298
Hin1II CATG 7 cut(s) 138, 142, 189, 215, 303, 308, 377
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 75, 169
Hpy188I TCNGA 3 cut(s) 10, 46, 444
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 2 cut(s) 75, 169
HpyAV CCTTC 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 138
Hsp92II CATG 7 cut(s) 138, 142, 189, 215, 303, 308, 377
HspAI GCGC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 4 cut(s) 100, 204, 307, 382
LpnPI CCDG 5 cut(s) 63, 203, 211, 234, 303
Lsp1109I GCAGC 1 cut(s) 305
MalI GATC 4 cut(s) 102, 206, 309, 384
MboI GATC 4 cut(s) 100, 204, 307, 382
MluCI AATT 3 cut(s) 109, 153, 378
MnlI CCTC 7 cut(s) 66, 91, 167, 232, 266, 397, 450
Mph1103I ATGCAT 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 1 cut(s) 469
MspI CCGG 1 cut(s) 198
NaeI GCCGGC 1 cut(s) 199
NdeII GATC 4 cut(s) 100, 204, 307, 382
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 7 cut(s) 138, 142, 189, 215, 303, 308, 377
NlaIV GGNNCC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 199
PflMI CCANNNNNTGG 2 cut(s) 217, 396
PkrI GCNGC 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 2 cut(s) 72, 463
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 4 cut(s) 100, 204, 307, 382
Sau96I GGNCC 2 cut(s) 72, 463
SetI ASST 2 cut(s) 58, 326
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 72
Sse9I AATT 3 cut(s) 109, 153, 378
SsiI CCGC 2 cut(s) 158, 191
StyI CCWWGG 1 cut(s) 61
TaqI TCGA 2 cut(s) 87, 450
TasI AATT 3 cut(s) 109, 153, 378
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 2 cut(s) 217, 396
VpaK11BI GGWCC 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.