Prupe.1G307500_v2.0.a1

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016501
Physical Location & Seq
Reverse (-)
30011009 .. 30012307
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G307500.1

Sequence Viewer

Length: 465 bp
ATGGCTGCATATAACTCCAATTCCAAATTGGCTCAACCTGAAAAGCAACTTCCTCAAGGGCAATGGTCCACTGGCCTTTTCGATTGTTTGGACGATCGTTCTAATTGTCTTCTCACTTGTTTTTGTCCATGCGTCACCCTTGGGCGGATTGCGGAGATTGTTGACAGAGGGACTACATCTCGTGGGATGGCTAGCCTCAACGCCTACGCAATGGGGTCTATAGGTTGTGGGTGGCTATATTCTGGAAAATATCGAGCCAAGTTGAGAGCAATGTTTTCACTACCAGAAGAACCATGCGGTGATTTTGTGCTCCATGGCTGCTGCTGTGTCTTTTCTATTTGTCAGGAGTACAGAGAACTCAAAAATCATGGAATCGATCCCTCCATAGGGTGGCAAGCCAACGTTGAGAAGTGGAACCGGGAAGGGATCAAGCCTCCGAATGTCGAATCGGGCATGAATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

7.45

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58320
fragaria_vesca FvH4_4g27730
prunus_persica Prupe.1G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435591
rosa_laevigata RLG00000006579
rosa_multiflora Rmu_sc0001940.1_g000048 Rmu_sc0006697.1_g000001
rosa_roxburghii Rroxscaffold_5G00376820
rosa_rugosa Rorug04G0286900
rosa_samantha Rh4AG342300 Rh4BG350500 Rh4CG365200 Rh4DG344900
rosa_wichuraiana Rw4G029860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AciI CCGC 3 cut(s) 145, 152, 297
AclI AACGTT 1 cut(s) 402
AclWI GGATC 2 cut(s) 371, 434
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 144, 386, 387, 390
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 371, 434
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 5, 318, 321
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 127, 311
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 66
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 305, 308
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 419
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 6, 319, 322
BlsI GCNGC 3 cut(s) 7, 320, 323
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 419
BmtI GCTAGC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 139, 313
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 386, 387, 390
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 3 cut(s) 68, 216, 276
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 139, 313
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 4 cut(s) 144, 386, 387, 390
BseMI GCAATG 3 cut(s) 68, 216, 276
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 305, 308
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 4 cut(s) 144, 386, 387, 390
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 94, 376, 426
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 3 cut(s) 145, 152, 297
BspANI GGCC 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 416
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 2 cut(s) 371, 434
BsrDI GCAATG 3 cut(s) 68, 216, 276
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 139, 313
BssMI GATC 3 cut(s) 94, 376, 426
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 139, 313
Bst2BI CACGAG 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 193, 396
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 3 cut(s) 97, 379, 429
BstMBI GATC 3 cut(s) 94, 376, 426
BstMCI CGRYCG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 305, 308
BstV2I GAAGAC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 193, 396
Cfr13I GGNCC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 349
CviAII CATG 5 cut(s) 129, 294, 314, 368, 454
CviQI GTAC 1 cut(s) 349
DpnI GATC 3 cut(s) 96, 378, 428
DpnII GATC 3 cut(s) 94, 376, 426
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 139, 313
Eco47I GGWCC 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 139, 313
ErhI CCWWGG 2 cut(s) 139, 313
FaeI CATG 5 cut(s) 132, 297, 317, 371, 457
FaqI GGGAC 1 cut(s) 184
FatI CATG 5 cut(s) 128, 293, 313, 367, 453
Fnu4HI GCNGC 3 cut(s) 6, 319, 322
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 6, 319, 322
FspBI CTAG 1 cut(s) 192
GluI GCNGC 3 cut(s) 6, 319, 322
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 121
Hin1II CATG 5 cut(s) 132, 297, 317, 371, 457
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 372, 446, 457
HpaII CCGG 1 cut(s) 418
HphI GGTGA 2 cut(s) 127, 311
Hpy166II GTNNAC 2 cut(s) 69, 163
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 2 cut(s) 243, 344
Hpy8I GTNNAC 2 cut(s) 69, 163
HpyAV CCTTC 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 5 cut(s) 132, 297, 317, 371, 457
Kzo9I GATC 3 cut(s) 94, 376, 426
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 6 cut(s) 51, 57, 228, 297, 329, 431
Lsp1109I GCAGC 2 cut(s) 305, 308
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 96, 378, 428
MboI GATC 3 cut(s) 94, 376, 426
MboII GAAGA 2 cut(s) 101, 299
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 3 cut(s) 19, 26, 103
MnlI CCTC 5 cut(s) 63, 161, 206, 391, 444
MseI TTAA 1 cut(s) 463
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 419
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 313
NdeII GATC 3 cut(s) 94, 376, 426
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 5 cut(s) 132, 297, 317, 371, 457
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 372, 446, 457
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 7, 320, 323
Ple19I CGATCG 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 1 cut(s) 66
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 3 cut(s) 6, 319, 322
Sau3AI GATC 3 cut(s) 94, 376, 426
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 312
SetI ASST 3 cut(s) 40, 226, 405
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 3 cut(s) 19, 26, 103
SsiI CCGC 3 cut(s) 145, 152, 297
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 139, 313
TaiI ACGT 1 cut(s) 405
TaqI TCGA 4 cut(s) 81, 253, 375, 444
TasI AATT 3 cut(s) 19, 26, 103
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 3 cut(s) 372, 446, 457
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 5, 318, 321
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.