Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005067

Physical Location & Seq

Genomic Coordinates Reverse (-)

22462026 .. 22465495

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAACCTTCTCCAGAGTTGTAAGGACATGGCGATGATGATGAGGATAGATAGCGTGAGCCACATCACCAATACTGCTCTACTTCCATGTCTCTACAACGGAACAGTTCTTCGCCGGCGCTCCCTCAGTCTCCGAAAGTGTGGTTTCCGAGAACGAAAGTTTCAGCTCCGATGCGTCTCTGCTTCTTCCGATTCGTTGCAGTTTGATTTCTCTCCGCCTCCAATTGATCACGATTTTCTTGATACAATAAGTGTTTCTGGAGGTAAAGTTTCTGAAGATGGTGTTGTTGAGAGTTTTGATAACGACGATGAGGCTTTGGATGCATTTGATAATGGAGTTGTGGTTGTGGACCTCTCACATTTTGGGAGAATTCGAGTTAGTGGAGATGACCGTGCTCATTTCCTTCATAACCAAACCACTGCCAATTTTGAAAGCCTTTATGAAGGACAGGGATGTGACACTGTATTTGTTACCCCAACAGCAAGGACGATAGATATTGCACATGCCTGGATCATGAAAAATGCAATATTGCTGACTGTTTCTCCAACGACATGCCAAAGCATAATTGAGATGCTCAACAAGTACATTTTCTTTGCTGACAAGGTAGAGATCAAGGACATCACCAAGCAAACTTGCTTATTTGCTTTAGCTGGACCCAAAAGCAACCAAATCATGTCTAAACTGAATCTGGGAGATCTTATTGGGCAGCCATATGGCAGGCATCAGCATTATAGTTTTGATGGAATGCCAATAACAGTTGGGGTCGGAAGTCTTATTTCAGATGAAGGCTTTACCATGTTAATGTCGCCAGGGGGTGCCGTTTCAGTCTGGAAGACCCTTTTAGCTGAAGGTGCTATTCCGATGGGTTCTGTAGCCTGGGAGAAACTTAGAATCACTCAAGGAAGACCAGCACCTGAGAGAGAACTCAGCAAGGAATTTAATGTTCTGGAGGCGGGCCTATGGAACTCGATTTCATTGAACAAAGGATGTTATAAGGGACAGGAGACAATAGCAAGACTCATGACATATGATGGAATCAAGCAAAGATTATGTGGACTTAATCTCTCTGCACCATCGGAACCCGGCAGCACCATCACAGTCGACGGGAAAAAGGTGGGGAAGCTAACGAGCTACACTGGGGGAAAAAACGGGTCTGGCCATTTCGGGTTAGGCTACATCAAGAAACAAGCAGCCTCAATTGGCAACACAGTGACTGTAGGTGAAGATATTTCAGGGATTGTATCTGAAGTCCCTTATCTAGCGCGGCAACATCCTCCATCAGCCAACTCGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016226 GO:0016491 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

432

Amino Acids

47.01

Weight (kDa)

6.37

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_T	PF01571	106 - 328	2.1e-28	GCVT N-terminal domain
GCV_T_C	PF08669	349 - 406	4.7e-07	Glycine cleavage T-protein C-terminal barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60990 AT1G60990 AT1G60990
fragaria_vesca	FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120
malus_domestica	MD08G1235500.v1.1
prunus_persica	Prupe.1G571400_v2.0.a1 Prupe.1G571400_v2.0.a1 Prupe.1G571400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221781
rosa_laevigata	RLG00000002124
rosa_multiflora	Rmu_sc0001922.1_g000010
rosa_roxburghii	Rroxscaffold_3G00237730
rosa_rugosa	Rorug07G0203300
rosa_samantha	Rh7AG344200 Rh7BG334900 Rh7CG361600 Rh7DG342000
rosa_wichuraiana	Rw7G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccB1I	GGYRCC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	1101
AccII	CGCG	1 cut(s)	1264
AciI	CCGC	3 cut(s)	215, 953, 1264
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	1156
AcsI	RAATTY	2 cut(s)	369, 935
AcuI	CTGAAG	3 cut(s)	294, 867, 1266
AfaI	GTAC	1 cut(s)	584
AgsI	TTSAA	2 cut(s)	431, 979
AjnI	CCWGG	3 cut(s)	506, 808, 875
AluBI	AGCT	5 cut(s)	166, 650, 845, 1123, 1131
AluI	AGCT	5 cut(s)	166, 650, 845, 1123, 1131
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	4 cut(s)	95, 134, 181, 998
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	2 cut(s)	914, 1214
Ama87I	CYCGRG	1 cut(s)	1288
AoxI	GGCC	2 cut(s)	955, 1156
ApeKI	GCWGC	3 cut(s)	706, 1086, 1190
ApoI	RAATTY	2 cut(s)	369, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspLEI	GCGC	2 cut(s)	120, 1264
AspS9I	GGNCC	3 cut(s)	349, 653, 955
AsuC2I	CCSGG	1 cut(s)	1083
AsuHPI	GGTGA	3 cut(s)	58, 613, 1232
AvaI	CYCGRG	1 cut(s)	1288
AvaII	GGWCC	2 cut(s)	349, 653
BalI	TGGCCA	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	815
BbsI	GAAGAC	2 cut(s)	839, 910
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	718, 1098, 1202
BccI	CCATC	7 cut(s)	272, 734, 856, 1025, 1081, 1100, 1285
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	3 cut(s)	508, 810, 877
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	1083
BcoDI	GTCTC	4 cut(s)	95, 134, 181, 998
BfaI	CTAG	1 cut(s)	1259
BfmI	CTRYAG	2 cut(s)	870, 1215
BfoI	RGCGCY	1 cut(s)	121
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	4 cut(s)	707, 1087, 1191, 1265
BlsI	GCNGC	4 cut(s)	708, 1088, 1192, 1266
Bme1390I	CCNGG	4 cut(s)	508, 810, 877, 1083
Bme18I	GGWCC	2 cut(s)	349, 653
BmeT110I	CYCGRG	1 cut(s)	1288
BmgT120I	GGNCC	3 cut(s)	349, 653, 955
BmiI	GGNNCC	3 cut(s)	655, 817, 1080
BmrFI	CCNGG	4 cut(s)	508, 810, 877, 1083
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	4 cut(s)	161, 310, 561, 730
BmuI	ACTGGG	1 cut(s)	1146
BpiI	GAAGAC	2 cut(s)	839, 910
BpmI	CTGGAG	2 cut(s)	279, 968
BpuEI	CTTGAG	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	1083
BsaJI	CCNNGG	2 cut(s)	809, 876
BsaXI	ACNNNNNCTCC	6 cut(s)	252, 282, 327, 357, 526, 556
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	1141
BseBI	CCWGG	3 cut(s)	508, 810, 877
BseDI	CCNNGG	2 cut(s)	809, 876
BseGI	GGATG	4 cut(s)	325, 458, 992, 1270
BseMII	CTCAG	3 cut(s)	139, 906, 940
BseNI	ACTGG	1 cut(s)	1141
BseXI	GCAGC	3 cut(s)	718, 1098, 1202
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	1 cut(s)	1264
BshFI	GGCC	2 cut(s)	957, 1158
BshNI	GGYRCC	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	1288
BsiSI	CCGG	2 cut(s)	115, 1083
BslFI	GGGAC	2 cut(s)	1011, 1235
BsmAI	GTCTC	4 cut(s)	95, 134, 181, 998
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	1011, 1235
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	957, 1158
BsoBI	CYCGRG	1 cut(s)	1288
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	226, 510, 609, 694
BspACI	CCGC	3 cut(s)	215, 953, 1264
BspANI	GGCC	2 cut(s)	957, 1158
BspCNI	CTCAG	3 cut(s)	138, 907, 939
BspFNI	CGCG	1 cut(s)	1264
BspHI	TCATGA	2 cut(s)	513, 1020
BspLI	GGNNCC	3 cut(s)	655, 817, 1080
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	815
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	1141
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	809, 876
BssMI	GATC	4 cut(s)	226, 510, 609, 694
Bst2UI	CCWGG	3 cut(s)	508, 810, 877
Bst4CI	ACNGT	8 cut(s)	106, 392, 463, 538, 757, 1099, 1210, 1216
BstC8I	GCNNGC	3 cut(s)	116, 719, 955
BstDEI	CTNAG	4 cut(s)	125, 887, 915, 926
BstF5I	GGATG	4 cut(s)	325, 458, 992, 1270
BstFNI	CGCG	1 cut(s)	1264
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 1264
BstKTI	GATC	4 cut(s)	229, 513, 612, 697
BstMAI	GTCTC	4 cut(s)	95, 134, 181, 998
BstMBI	GATC	4 cut(s)	226, 510, 609, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 851
BstNI	CCWGG	3 cut(s)	508, 810, 877
BstNSI	RCATGY	2 cut(s)	506, 555
BstSCI	CCNGG	4 cut(s)	506, 808, 875, 1081
BstSFI	CTRYAG	2 cut(s)	870, 1215
BstUI	CGCG	1 cut(s)	1264
BstV1I	GCAGC	3 cut(s)	718, 1098, 1202
BstV2I	GAAGAC	2 cut(s)	839, 910
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	957, 1158
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	325, 458, 992, 1270
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	417, 459, 1134, 1215
Cac8I	GCNNGC	3 cut(s)	116, 719, 955
CaiI	CAGNNNCTG	2 cut(s)	914, 1214
CciI	TCATGA	2 cut(s)	513, 1020
CfoI	GCGC	2 cut(s)	120, 1264
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	349, 653, 955
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	8 cut(s)	28, 87, 503, 514, 552, 673, 796, 1021
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	4 cut(s)	125, 887, 915, 926
DpnI	GATC	4 cut(s)	228, 512, 611, 696
DpnII	GATC	4 cut(s)	226, 510, 609, 694
EaeI	YGGCCR	1 cut(s)	1156
EciI	GGCGGA	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	349, 653
Eco57I	CTGAAG	3 cut(s)	294, 867, 1266
Eco88I	CYCGRG	1 cut(s)	1288
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	3 cut(s)	506, 808, 875
EcoT22I	ATGCAT	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	8 cut(s)	31, 90, 506, 517, 555, 676, 799, 1024
FaqI	GGGAC	2 cut(s)	1011, 1235
FatI	CATG	8 cut(s)	27, 86, 502, 513, 551, 672, 795, 1020
FauI	CCCGC	1 cut(s)	946
FauNDI	CATATG	2 cut(s)	712, 1027
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	4 cut(s)	707, 1087, 1191, 1265
FokI	GGATG	4 cut(s)	332, 465, 999, 1257
Fsp4HI	GCNGC	4 cut(s)	707, 1087, 1191, 1265
FspBI	CTAG	1 cut(s)	1259
GlaI	GCGC	2 cut(s)	119, 1263
GluI	GCNGC	4 cut(s)	707, 1087, 1191, 1265
GsuI	CTGGAG	2 cut(s)	279, 968
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	957, 1158
HapII	CCGG	2 cut(s)	115, 1083
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	120, 1264
Hin1II	CATG	8 cut(s)	31, 90, 506, 517, 555, 676, 799, 1024
Hin6I	GCGC	2 cut(s)	118, 1262
HinP1I	GCGC	2 cut(s)	118, 1262
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HinfI	GANTC	5 cut(s)	191, 685, 891, 1017, 1035
HpaII	CCGG	2 cut(s)	115, 1083
HphI	GGTGA	3 cut(s)	58, 613, 1232
Hpy166II	GTNNAC	3 cut(s)	349, 1055, 1102
Hpy8I	GTNNAC	3 cut(s)	349, 1055, 1102
Hpy99I	CGWCG	2 cut(s)	308, 1106
HpyAV	CCTTC	5 cut(s)	17, 413, 437, 779, 842
HpyCH4III	ACNGT	8 cut(s)	106, 392, 463, 538, 757, 1099, 1210, 1216
HpyCH4V	TGCA	5 cut(s)	199, 323, 500, 524, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 851
HpyF3I	CTNAG	4 cut(s)	125, 887, 915, 926
Hsp92II	CATG	8 cut(s)	31, 90, 506, 517, 555, 676, 799, 1024
HspAI	GCGC	2 cut(s)	118, 1262
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	226, 510, 609, 694
LmnI	GCTCC	2 cut(s)	125, 171
Lsp1109I	GCAGC	3 cut(s)	718, 1098, 1202
LweI	GCATC	4 cut(s)	161, 310, 561, 730
MaeI	CTAG	1 cut(s)	1259
MaeIII	GTNAC	3 cut(s)	455, 469, 1210
MalI	GATC	4 cut(s)	228, 512, 611, 696
MboI	GATC	4 cut(s)	226, 510, 609, 694
MboII	GAAGA	6 cut(s)	101, 177, 287, 844, 915, 1235
MfeI	CAATTG	2 cut(s)	222, 1197
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	1158
MluCI	AATT	6 cut(s)	222, 369, 424, 564, 935, 1197
MluNI	TGGCCA	1 cut(s)	1158
MlyI	GAGTC	1 cut(s)	1011
MmeI	TCCRAC	2 cut(s)	569, 745
MnlI	CCTC	9 cut(s)	36, 134, 228, 254, 304, 362, 943, 1204, 1284
Mox20I	TGGCCA	1 cut(s)	1158
Mph1103I	ATGCAT	1 cut(s)	325
MreI	CGCCGGCG	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	1158
MseI	TTAA	3 cut(s)	800, 939, 1059
MslI	CAYNNNNRTG	2 cut(s)	32, 800
Msp20I	TGGCCA	1 cut(s)	1158
MspI	CCGG	2 cut(s)	115, 1083
MspR9I	CCNGG	4 cut(s)	508, 810, 877, 1083
MunI	CAATTG	2 cut(s)	222, 1197
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	508, 810, 877
MvnI	CGCG	1 cut(s)	1264
MwoI	GCNNNNNNNGC	2 cut(s)	320, 851
NaeI	GCCGGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	1083
NdeI	CATATG	2 cut(s)	712, 1027
NdeII	GATC	4 cut(s)	226, 510, 609, 694
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	8 cut(s)	31, 90, 506, 517, 555, 676, 799, 1024
NlaIV	GGNNCC	3 cut(s)	655, 817, 1080
NmuCI	GTSAC	2 cut(s)	455, 1210
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	506, 555
PaeR7I	CTCGAG	1 cut(s)	1288
PagI	TCATGA	2 cut(s)	513, 1020
PctI	GAATGC	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	116
PfeI	GAWTC	4 cut(s)	191, 685, 891, 1035
PkrI	GCNGC	4 cut(s)	708, 1088, 1192, 1266
PleI	GAGTC	1 cut(s)	1011
PpsI	GAGTC	1 cut(s)	1011
PsiI	TTATAA	1 cut(s)	993
Psp6I	CCWGG	3 cut(s)	506, 808, 875
PspGI	CCWGG	3 cut(s)	506, 808, 875
PspN4I	GGNNCC	3 cut(s)	655, 817, 1080
PspPI	GGNCC	3 cut(s)	349, 653, 955
PspXI	VCTCGAGB	1 cut(s)	1288
PstNI	CAGNNNCTG	2 cut(s)	914, 1214
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	2 cut(s)	32, 800
SalI	GTCGAC	1 cut(s)	1100
SaqAI	TTAA	3 cut(s)	800, 939, 1059
SatI	GCNGC	4 cut(s)	707, 1087, 1191, 1265
Sau3AI	GATC	4 cut(s)	226, 510, 609, 694
Sau96I	GGNCC	3 cut(s)	349, 653, 955
SchI	GAGTC	1 cut(s)	1011
ScrFI	CCNGG	4 cut(s)	508, 810, 877, 1083
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	161, 310, 561, 730
SfcI	CTRYAG	2 cut(s)	870, 1215
Sfr274I	CTCGAG	1 cut(s)	1288
SgrAI	CRCCGGYG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	349, 653
SlaI	CTCGAG	1 cut(s)	1288
SmiMI	CAYNNNNRTG	2 cut(s)	32, 800
SmlI	CTYRAG	2 cut(s)	897, 1288
SmoI	CTYRAG	2 cut(s)	897, 1288
Sse9I	AATT	6 cut(s)	222, 369, 424, 564, 935, 1197
SsiI	CCGC	3 cut(s)	215, 953, 1264
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	1 cut(s)	1259
StyD4I	CCNGG	4 cut(s)	506, 808, 875, 1081
TaaI	ACNGT	8 cut(s)	106, 392, 463, 538, 757, 1099, 1210, 1216
TaqI	TCGA	4 cut(s)	373, 968, 1101, 1289
TasI	AATT	6 cut(s)	222, 369, 424, 564, 935, 1197
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	1267
TfiI	GAWTC	4 cut(s)	191, 685, 891, 1035
Tru1I	TTAA	3 cut(s)	800, 939, 1059
Tru9I	TTAA	3 cut(s)	800, 939, 1059
TscAI	CASTG	4 cut(s)	424, 466, 1141, 1215
TseFI	GTSAC	2 cut(s)	455, 1210
TseI	GCWGC	3 cut(s)	706, 1086, 1190
Tsp45I	GTSAC	2 cut(s)	455, 1210
TspDTI	ATGAA	6 cut(s)	17, 395, 456, 530, 798, 963
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	424, 466, 1141, 1215
VpaK11BI	GGWCC	2 cut(s)	349, 653
XapI	RAATTY	2 cut(s)	369, 935
XceI	RCATGY	2 cut(s)	506, 555
XhoI	CTCGAG	1 cut(s)	1288
XmiI	GTMKAC	1 cut(s)	1101
XspI	CTAG	1 cut(s)	1259
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.