Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001922.1

Orthogroup ID

OG0005067

Physical Location & Seq

Genomic Coordinates Reverse (-)

63025 .. 68037

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001922.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atggtccccggatttcatacaaccttggatcaatgtgttccaagagaagccatttctatggggcatttcatcaaacaagttgagtgcatcattcatgctgccacatttaacatacatctgcagaagccggtttccgaatgtaacagtggagttgatgagacccttcttgagaaaaacaagacgaagaagcagcagaagctcacactcttctcatcttccaaaacggggaccagggctttgccattcgacctctcccctcctccgattgaccacgacctcttggacactgtggcagcaactgcaggagcaaaagtctcagatgatgggattatcgaaacgtttgataacgacgaccaagctttagatgctgtcgataatggtgttgcggttgtggacctttcacatttttgccggattagagttagcggagaagaccgcatccagtttcttcacaaccaaagcacggccaatttcgaatgccttgatgaaggacagggatgtgacaccgtttttgttacaccaacagctcggacaatagatatcgctcatgcatgggtcatgaaaaatgcagtaatgttaatggtttcacctgtttccagaagtatctctgaaatgctgaaaaagtacatattttttaatgacaaggtagagattcaagacatcactaagcaaacttgtttcttcgttttagtgggacctaaaagcaatcaacttatggaggagttaaacctaggtgatctcgttggacaaccatatggcacccatcagcatttcagtgtcaatgggatgcctgtaactgtgggagtgggcaatgtgatatctgaaaaaggcttttcacttttgatgtcaccagctgccgctggatcagtctggaaaactattctatcacaaggtgcaactccaatgggctctaatgcatgggaaaaactaagaattctccaaggaaagccagctcctcagaaggagcttactaatgaatataatgtcctggaggctggtctctggaattcgatctccttaagcaaagggtgctataagggacaagagactatatcgagactgataacgtatgatggagtcaagcaaagactttggggaatctctctatcagcgccagcagaacctggcagcatcattacagttggtgggaaaaaggttggaaagctaacaagttgcacatctggaagaaaggaaagcgagtattttggtttaggctatatcaagaggcaaaatgtttcagaaggagacacgctaatggttggagatgctattactggtacagtggtagaagtaccttttcttgctgggcaacggccaccatcgagaagctcaagctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016226 GO:0016491 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

446

Amino Acids

48.43

Weight (kDa)

5.96

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60990 AT1G60990 AT1G60990
fragaria_vesca	FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120 FvH4_5g29120
malus_domestica	MD08G1235500.v1.1
prunus_persica	Prupe.1G571400_v2.0.a1 Prupe.1G571400_v2.0.a1 Prupe.1G571400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221781
rosa_laevigata	RLG00000002124
rosa_multiflora	Rmu_sc0001922.1_g000010
rosa_roxburghii	Rroxscaffold_3G00237730
rosa_rugosa	Rorug07G0203300
rosa_samantha	Rh7AG344200 Rh7BG334900 Rh7CG361600 Rh7DG342000
rosa_wichuraiana	Rw7G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AciI	CCGC	4 cut(s)	386, 426, 436, 858
AclI	AACGTT	1 cut(s)	338
AclWI	GGATC	2 cut(s)	36, 871
AcoI	YGGCCR	2 cut(s)	465, 1313
AcsI	RAATTY	2 cut(s)	933, 1006
AdeI	CACNNNGTG	1 cut(s)	893
AfaI	GTAC	3 cut(s)	626, 1279, 1293
AfiI	CCNNNNNNNGG	2 cut(s)	225, 463
AflII	CTTAAG	1 cut(s)	1018
AgsI	TTSAA	1 cut(s)	656
AjnI	CCWGG	3 cut(s)	230, 987, 1123
AluBI	AGCT	9 cut(s)	199, 359, 527, 854, 953, 967, 1165, 1329, 1335
AluI	AGCT	9 cut(s)	199, 359, 527, 854, 953, 967, 1165, 1329, 1335
Alw26I	GTCTC	6 cut(s)	152, 319, 1004, 1040, 1051, 1239
AlwI	GGATC	2 cut(s)	36, 871
AlwNI	CAGNNNCTG	2 cut(s)	299, 1124
AoxI	GGCC	2 cut(s)	465, 1313
ApeKI	GCWGC	5 cut(s)	98, 190, 293, 854, 1128
ApoI	RAATTY	2 cut(s)	933, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	220, 252, 494, 526
AspA2I	CCTAGG	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	1114
AspS9I	GGNCC	4 cut(s)	4, 228, 394, 695
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	579, 746, 840
AsuII	TTCGAA	1 cut(s)	474
AvaII	GGWCC	4 cut(s)	4, 228, 394, 695
AvrII	CCTAGG	1 cut(s)	730
BaeI	ACNNNNGTAYC	2 cut(s)	1269, 1302
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	911
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	85, 202, 305, 841, 1140
BccI	CCATC	4 cut(s)	317, 771, 1067, 1327
BceAI	ACGGC	2 cut(s)	480, 1328
BciT130I	CCWGG	3 cut(s)	232, 989, 1125
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	6 cut(s)	152, 319, 1004, 1040, 1051, 1239
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	2 cut(s)	119, 300
BfoI	RGCGCY	1 cut(s)	1115
BfrI	CTTAAG	1 cut(s)	1018
BisI	GCNGC	6 cut(s)	99, 191, 294, 855, 858, 1129
BlnI	CCTAGG	1 cut(s)	730
BlsI	GCNGC	6 cut(s)	100, 192, 295, 856, 859, 1130
Bme1390I	CCNGG	4 cut(s)	9, 232, 989, 1125
Bme18I	GGWCC	4 cut(s)	4, 228, 394, 695
BmgT120I	GGNCC	4 cut(s)	4, 228, 394, 695
BmiI	GGNNCC	4 cut(s)	6, 229, 696, 760
BmrFI	CCNGG	4 cut(s)	9, 232, 989, 1125
BmsI	GCATC	6 cut(s)	96, 355, 447, 777, 1140, 1255
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	1010
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	188, 1315
BpuMI	CCSGG	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	152, 1004
BsaJI	CCNNGG	5 cut(s)	7, 24, 231, 730, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 463
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	442, 1279
Bse3DI	GCAATG	1 cut(s)	817
BseBI	CCWGG	3 cut(s)	232, 989, 1125
BseDI	CCNNGG	5 cut(s)	7, 24, 231, 730, 940
BseGI	GGATG	3 cut(s)	438, 503, 792
BseLI	CCNNNNNNNGG	2 cut(s)	225, 463
BseMI	GCAATG	1 cut(s)	817
BseMII	CTCAG	2 cut(s)	330, 971
BseNI	ACTGG	2 cut(s)	442, 1279
BseRI	GAGGAG	3 cut(s)	249, 734, 945
BseXI	GCAGC	5 cut(s)	85, 202, 305, 841, 1140
BseYI	CCCAGC	1 cut(s)	1304
BshFI	GGCC	2 cut(s)	467, 1315
BshNI	GGYRCC	1 cut(s)	758
BsiSI	CCGG	3 cut(s)	9, 128, 412
BslFI	GGGAC	3 cut(s)	241, 708, 1053
BslI	CCNNNNNNNGG	2 cut(s)	225, 463
BsmAI	GTCTC	6 cut(s)	152, 319, 1004, 1040, 1051, 1239
BsmFI	GGGAC	3 cut(s)	241, 708, 1053
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	467, 1315
Bso31I	GGTCTC	2 cut(s)	152, 1004
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	911
Bsp143I	GATC	4 cut(s)	28, 736, 863, 1011
BspACI	CCGC	4 cut(s)	386, 426, 436, 858
BspANI	GGCC	2 cut(s)	467, 1315
BspCNI	CTCAG	2 cut(s)	329, 970
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	6, 229, 696, 760
BspMAI	CTGCAG	2 cut(s)	123, 304
BspPI	GGATC	2 cut(s)	36, 871
BspT104I	TTCGAA	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	1018
BspTNI	GGTCTC	2 cut(s)	152, 1004
BsrDI	GCAATG	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	442, 1279
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	5 cut(s)	7, 24, 231, 730, 940
BssMI	GATC	4 cut(s)	28, 736, 863, 1011
BssT1I	CCWWGG	3 cut(s)	24, 730, 940
Bst2UI	CCWGG	3 cut(s)	232, 989, 1125
Bst4CI	ACNGT	6 cut(s)	146, 289, 508, 799, 1141, 1282
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	1018
BstAPI	GCANNNNNTGC	2 cut(s)	299, 1029
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	951, 1116
BstDEI	CTNAG	4 cut(s)	316, 666, 929, 957
BstF5I	GGATG	3 cut(s)	438, 503, 792
BstH2I	RGCGCY	1 cut(s)	1115
BstHHI	GCGC	1 cut(s)	1114
BstKTI	GATC	4 cut(s)	31, 739, 866, 1014
BstMAI	GTCTC	6 cut(s)	152, 319, 1004, 1040, 1051, 1239
BstMBI	GATC	4 cut(s)	28, 736, 863, 1011
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 299, 365, 1029
BstNI	CCWGG	3 cut(s)	232, 989, 1125
BstSCI	CCNGG	4 cut(s)	7, 230, 987, 1123
BstSFI	CTRYAG	2 cut(s)	119, 300
BstV1I	GCAGC	5 cut(s)	85, 202, 305, 841, 1140
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	467, 1315
BtsCI	GGATG	3 cut(s)	438, 503, 792
BtsIMutI	CAGTG	4 cut(s)	151, 285, 781, 1287
Cac8I	GCNNGC	2 cut(s)	951, 1116
CaiI	CAGNNNCTG	2 cut(s)	299, 1124
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	1114
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	4 cut(s)	4, 228, 394, 695
Csp6I	GTAC	3 cut(s)	625, 1278, 1292
CviAII	CATG	5 cut(s)	95, 548, 552, 559, 918
CviQI	GTAC	3 cut(s)	625, 1278, 1292
DdeI	CTNAG	4 cut(s)	316, 666, 929, 957
DpnI	GATC	4 cut(s)	30, 738, 865, 1013
DpnII	GATC	4 cut(s)	28, 736, 863, 1011
DraIII	CACNNNGTG	1 cut(s)	893
EaeI	YGGCCR	2 cut(s)	465, 1313
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	3 cut(s)	24, 730, 940
Eco24I	GRGCYC	1 cut(s)	911
Eco31I	GGTCTC	2 cut(s)	152, 1004
Eco32I	GATATC	2 cut(s)	541, 819
Eco47I	GGWCC	4 cut(s)	4, 228, 394, 695
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	933, 1006
EcoRII	CCWGG	3 cut(s)	230, 987, 1123
EcoRV	GATATC	2 cut(s)	541, 819
EcoT14I	CCWWGG	3 cut(s)	24, 730, 940
EcoT22I	ATGCAT	2 cut(s)	553, 919
EcoT38I	GRGCYC	1 cut(s)	911
ErhI	CCWWGG	3 cut(s)	24, 730, 940
FaeI	CATG	5 cut(s)	98, 551, 555, 562, 921
FaqI	GGGAC	3 cut(s)	241, 708, 1053
FatI	CATG	5 cut(s)	94, 547, 551, 558, 917
FauNDI	CATATG	1 cut(s)	754
Fnu4HI	GCNGC	6 cut(s)	99, 191, 294, 855, 858, 1129
FokI	GGATG	3 cut(s)	425, 510, 799
FriOI	GRGCYC	1 cut(s)	911
Fsp4HI	GCNGC	6 cut(s)	99, 191, 294, 855, 858, 1129
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	1 cut(s)	1113
GluI	GCNGC	6 cut(s)	99, 191, 294, 855, 858, 1129
GsaI	CCCAGC	1 cut(s)	1308
GsuI	CTGGAG	1 cut(s)	1010
HaeII	RGCGCY	1 cut(s)	1115
HaeIII	GGCC	2 cut(s)	467, 1315
HapII	CCGG	3 cut(s)	9, 128, 412
HhaI	GCGC	1 cut(s)	1114
Hin1II	CATG	5 cut(s)	98, 551, 555, 562, 921
Hin6I	GCGC	1 cut(s)	1112
HinP1I	GCGC	1 cut(s)	1112
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	652, 1077, 1098
HpaII	CCGG	3 cut(s)	9, 128, 412
HphI	GGTGA	3 cut(s)	579, 746, 840
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	8 cut(s)	136, 264, 319, 531, 610, 823, 960, 1240
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	173, 482, 955, 1235
HpyCH4III	ACNGT	6 cut(s)	146, 289, 508, 799, 1141, 1282
HpyCH4IV	ACGT	2 cut(s)	338, 1067
HpyCH4V	TGCA	8 cut(s)	87, 121, 302, 551, 569, 896, 917, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 299, 365, 1029
HpyF3I	CTNAG	4 cut(s)	316, 666, 929, 957
HpySE526I	ACGT	2 cut(s)	338, 1067
Hsp92II	CATG	5 cut(s)	98, 551, 555, 562, 921
HspAI	GCGC	1 cut(s)	1112
Kzo9I	GATC	4 cut(s)	28, 736, 863, 1011
LmnI	GCTCC	4 cut(s)	305, 958, 964, 1340
Lsp1109I	GCAGC	5 cut(s)	85, 202, 305, 841, 1140
LweI	GCATC	6 cut(s)	96, 355, 447, 777, 1140, 1255
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	2 cut(s)	338, 1067
MaeIII	GTNAC	5 cut(s)	140, 500, 514, 793, 846
MalI	GATC	4 cut(s)	30, 738, 865, 1013
MboI	GATC	4 cut(s)	28, 736, 863, 1011
MboII	GAAGA	7 cut(s)	196, 199, 207, 440, 443, 673, 1197
MhlI	GDGCHC	1 cut(s)	911
MluCI	AATT	3 cut(s)	469, 933, 1006
MlyI	GAGTC	1 cut(s)	1086
MmeI	TCCRAC	3 cut(s)	724, 1138, 1240
MnlI	CCTC	8 cut(s)	260, 267, 270, 287, 712, 966, 985, 1218
Mph1103I	ATGCAT	2 cut(s)	553, 919
MseI	TTAA	5 cut(s)	108, 578, 636, 725, 1019
MslI	CAYNNNNRTG	3 cut(s)	56, 774, 1253
MspA1I	CMGCKG	2 cut(s)	854, 860
MspCI	CTTAAG	1 cut(s)	1018
MspI	CCGG	3 cut(s)	9, 128, 412
MspR9I	CCNGG	4 cut(s)	9, 232, 989, 1125
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	3 cut(s)	232, 989, 1125
MwoI	GCNNNNNNNGC	4 cut(s)	196, 299, 365, 1029
NciI	CCSGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	4 cut(s)	28, 736, 863, 1011
NlaIII	CATG	5 cut(s)	98, 551, 555, 562, 921
NlaIV	GGNNCC	4 cut(s)	6, 229, 696, 760
NmuCI	GTSAC	2 cut(s)	500, 846
NsiI	ATGCAT	2 cut(s)	553, 919
NspV	TTCGAA	1 cut(s)	474
PagI	TCATGA	1 cut(s)	558
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	652, 1098
PfoI	TCCNGGA	1 cut(s)	987
PkrI	GCNGC	6 cut(s)	100, 192, 295, 856, 859, 1130
PleI	GAGTC	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1085
PpuMI	RGGWCCY	1 cut(s)	695
Psp1406I	AACGTT	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	3 cut(s)	230, 987, 1123
PspFI	CCCAGC	1 cut(s)	1304
PspGI	CCWGG	3 cut(s)	230, 987, 1123
PspN4I	GGNNCC	4 cut(s)	6, 229, 696, 760
PspPI	GGNCC	4 cut(s)	4, 228, 394, 695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	123, 304
PstNI	CAGNNNCTG	2 cut(s)	299, 1124
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	3 cut(s)	626, 1279, 1293
RsaNI	GTAC	3 cut(s)	625, 1278, 1292
RseI	CAYNNNNRTG	3 cut(s)	56, 774, 1253
SaqAI	TTAA	5 cut(s)	108, 578, 636, 725, 1019
SatI	GCNGC	6 cut(s)	99, 191, 294, 855, 858, 1129
Sau3AI	GATC	4 cut(s)	28, 736, 863, 1011
Sau96I	GGNCC	4 cut(s)	4, 228, 394, 695
SchI	GAGTC	1 cut(s)	1086
ScrFI	CCNGG	4 cut(s)	9, 232, 989, 1125
SduI	GDGCHC	1 cut(s)	911
SfaNI	GCATC	6 cut(s)	96, 355, 447, 777, 1140, 1255
SfcI	CTRYAG	2 cut(s)	119, 300
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	4 cut(s)	4, 228, 394, 695
SmiMI	CAYNNNNRTG	3 cut(s)	56, 774, 1253
SmlI	CTYRAG	3 cut(s)	167, 1018, 1330
SmoI	CTYRAG	3 cut(s)	167, 1018, 1330
Sse9I	AATT	3 cut(s)	469, 933, 1006
SsiI	CCGC	4 cut(s)	386, 426, 436, 858
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	4 cut(s)	7, 230, 987, 1123
StyI	CCWWGG	3 cut(s)	24, 730, 940
TaaI	ACNGT	6 cut(s)	146, 289, 508, 799, 1141, 1282
TaiI	ACGT	2 cut(s)	341, 1070
TaqI	TCGA	7 cut(s)	246, 333, 372, 474, 1010, 1055, 1322
TasI	AATT	3 cut(s)	469, 933, 1006
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	2 cut(s)	652, 1098
Tru1I	TTAA	5 cut(s)	108, 578, 636, 725, 1019
Tru9I	TTAA	5 cut(s)	108, 578, 636, 725, 1019
TscAI	CASTG	4 cut(s)	151, 292, 781, 1287
TseFI	GTSAC	2 cut(s)	500, 846
TseI	GCWGC	5 cut(s)	98, 190, 293, 854, 1128
Tsp45I	GTSAC	2 cut(s)	500, 846
TspDTI	ATGAA	6 cut(s)	5, 58, 83, 501, 575, 990
TspRI	CASTG	4 cut(s)	151, 292, 781, 1287
Vha464I	CTTAAG	1 cut(s)	1018
VpaK11BI	GGWCC	4 cut(s)	4, 228, 394, 695
XapI	RAATTY	2 cut(s)	933, 1006
XmaJI	CCTAGG	1 cut(s)	730
XspI	CTAG	1 cut(s)	731
Zsp2I	ATGCAT	2 cut(s)	553, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.