AT1G61667

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010974
Physical Location & Seq
Forward (+)
22767464 .. 22768645
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61667.1

Sequence Viewer

Length: 471 bp
ATGTCTATGCTTCTTCTTCTTCTTCTTCTTGTCCCATTCATTACTCCATCTTCGCAATCTTCCATTCGAAACCTCCTCGAAGCTCGCGGTTTACCAGGTGGTTTGTTTCCAGACAACGTGGAGAGTTATAGTCTAGATGATAAGACAGGAGAGCTCGAAGTTCAGCTACAAAATCCTTGTTTCGCTCGGTTCGAAAACAGAGTATATTTTGATCGTGTGATTAAAGCAAATTTAAGCTATGGTGGGCTTGTTGGACTTGAAGGTTTAACACAAGAAGAGCTTTTTCTTTGGTTACCTGTTAAAGGCATTGCAGTGAATGATCCTTCTTCTGGACTTGTTCTCTTCGATATCGGTGTTGCTCATAAACAAATCTCTCGTTCTCTCTTTGAAGATCCTCCTGTTTGTTATCCTCCTGGATCTATAATGGAGAAGTTAGAAAAAAGCAAGATGGATATTCAGCTCAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

5.02

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 23 - 130 5e-29 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61667 AT1G61667
fragaria_vesca FvH4_3g03180
malus_domestica MD05G1334600.v1.1 MD10G1309500.v1.1
prunus_persica Prupe.4G030700_v2.0.a1
pyrus_communis pycom05g30610 pycom10g26090
rosa_chinensis RchiOBHm_Chr5g0004811
rosa_laevigata RLG00000031262
rosa_multiflora Rmu_co7972276.1_g000001 Rmu_sc0008308.1_g000015 Rmu_sc0010871.1_g000007
rosa_roxburghii Rroxscaffold_1G00070800
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041800 Rh5BG041500 Rh5CG045400 Rh5DG041900
rosa_wichuraiana Rw5G004050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 1 cut(s) 87
AclWI GGATC 3 cut(s) 314, 386, 424
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 302, 329
AgsI TTSAA 2 cut(s) 260, 389
AjnI CCWGG 2 cut(s) 94, 412
AluBI AGCT 6 cut(s) 83, 154, 166, 237, 280, 460
AluI AGCT 6 cut(s) 83, 154, 166, 237, 280, 460
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 3 cut(s) 314, 386, 424
ApoI RAATTY 1 cut(s) 229
AsuII TTCGAA 2 cut(s) 67, 192
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 2 cut(s) 55, 442
BciT130I CCWGG 2 cut(s) 96, 414
BfaI CTAG 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 96, 414
BmrFI CCNGG 2 cut(s) 96, 414
Bpu14I TTCGAA 2 cut(s) 67, 192
BpuEI CTTGAG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 329
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 96, 414
BseLI CCNNNNNNNGG 2 cut(s) 302, 329
BseMI GCAATG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 302, 329
BsmFI GGGAC 1 cut(s) 17
Bsp119I TTCGAA 2 cut(s) 67, 192
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 4 cut(s) 211, 319, 391, 416
BspACI CCGC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 87
BspPI GGATC 3 cut(s) 314, 386, 424
BspQI GCTCTTC 1 cut(s) 270
BspT104I TTCGAA 2 cut(s) 67, 192
BsrDI GCAATG 1 cut(s) 306
BssMI GATC 4 cut(s) 211, 319, 391, 416
Bst2UI CCWGG 2 cut(s) 96, 414
Bst6I CTCTTC 2 cut(s) 270, 347
BstBI TTCGAA 2 cut(s) 67, 192
BstC8I GCNNGC 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 291
BstENI CCTNNNNNAGG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 4 cut(s) 214, 322, 394, 419
BstMBI GATC 4 cut(s) 211, 319, 391, 416
BstNI CCWGG 2 cut(s) 96, 414
BstPI GGTNACC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 94, 412
BstUI CGCG 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 391, 416
BstYI RGATCY 2 cut(s) 391, 416
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 85
CsiI ACCWGGT 1 cut(s) 94
CviJI RGCY 7 cut(s) 83, 154, 166, 237, 247, 280, 460
CviKI_1 RGCY 7 cut(s) 83, 154, 166, 237, 247, 280, 460
DpnI GATC 4 cut(s) 213, 321, 393, 418
DpnII GATC 4 cut(s) 211, 319, 391, 416
Eam1104I CTCTTC 2 cut(s) 270, 347
EarI CTCTTC 2 cut(s) 270, 347
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoO65I GGTNACC 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 94, 412
EcoRV GATATC 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 156
FaiI YATR 6 cut(s) 8, 129, 205, 240, 363, 422
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 92
Hpy188III TCNNGA 4 cut(s) 110, 134, 330, 463
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 254, 333
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 117
Kzo9I GATC 4 cut(s) 211, 319, 391, 416
LguI GCTCTTC 1 cut(s) 270
LpnPI CCDG 9 cut(s) 81, 108, 123, 132, 309, 315, 399, 411, 426
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 291
MalI GATC 4 cut(s) 213, 321, 393, 418
MboI GATC 4 cut(s) 211, 319, 391, 416
MflI RGATCY 2 cut(s) 391, 416
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 4 cut(s) 83, 86, 405, 420
MseI TTAA 4 cut(s) 222, 233, 266, 300
MslI CAYNNNNRTG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 96, 414
MvaI CCWGG 2 cut(s) 96, 414
MvnI CGCG 1 cut(s) 87
NdeII GATC 4 cut(s) 211, 319, 391, 416
NspV TTCGAA 2 cut(s) 67, 192
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 94, 412
PspEI GGTNACC 1 cut(s) 291
PspGI CCWGG 2 cut(s) 94, 412
PsuI RGATCY 2 cut(s) 391, 416
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 222, 233, 266, 300
Sau3AI GATC 4 cut(s) 211, 319, 391, 416
ScrFI CCNGG 2 cut(s) 96, 414
SduI GDGCHC 1 cut(s) 156
SexAI ACCWGGT 1 cut(s) 94
SfuI TTCGAA 2 cut(s) 67, 192
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 94, 412
TaiI ACGT 1 cut(s) 120
TaqI TCGA 5 cut(s) 67, 78, 156, 192, 345
TasI AATT 1 cut(s) 229
Tru1I TTAA 4 cut(s) 222, 233, 266, 300
Tru9I TTAA 4 cut(s) 222, 233, 266, 300
TscAI CASTG 1 cut(s) 318
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 133
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.