Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7972276.1

Orthogroup ID

OG0010974

Physical Location & Seq

Genomic Coordinates Reverse (-)

29 .. 496

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7972276.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtctctgacacccgtatctctcttcactctctctctcttcctcctcctccatcttccttccacagtcacctcatctctccacaacctcctccagagccaaggcctccccggcggcctcttccccaacaacgtcaagtcctacaatctcgacccgatgggccgcctcgaggtccacctggactcttcttgcatggccaagttcgagaatcgggtctacttcgacaacacagtcagagccaatctcagctttggtgtgcttaaaggcttggagggtctgattcaagaagagctgtttctgtggttaccagtcaaaggaatctcagttagtgatccatcttctggtttgattttgtttgatattggtgttgcccataagcagctttctctttctctctttgaagaccctcctctttgtaaccctcaaggtagctccaaatttaccatctttgttccccaatttgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

155

Amino Acids

17.01

Weight (kDa)

5.71

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61667 AT1G61667
fragaria_vesca	FvH4_3g03180
malus_domestica	MD05G1334600.v1.1 MD10G1309500.v1.1
prunus_persica	Prupe.4G030700_v2.0.a1
pyrus_communis	pycom05g30610 pycom10g26090
rosa_chinensis	RchiOBHm_Chr5g0004811
rosa_laevigata	RLG00000031262
rosa_multiflora	Rmu_co7972276.1_g000001 Rmu_sc0008308.1_g000015 Rmu_sc0010871.1_g000007
rosa_roxburghii	Rroxscaffold_1G00070800
rosa_rugosa	Rorug04G0414000
rosa_samantha	Rh5AG041800 Rh5BG041500 Rh5CG045400 Rh5DG041900
rosa_wichuraiana	Rw5G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AbsI	CCTCGAGG	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	2 cut(s)	114, 163
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	169, 314, 341
AgsI	TTSAA	2 cut(s)	284, 401
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	249, 292, 382, 432
AluI	AGCT	4 cut(s)	249, 292, 382, 432
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	4 cut(s)	103, 115, 160, 195
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	160, 172
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	172
BaeI	ACNNNNGTAYC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	4 cut(s)	60, 151, 343, 452
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	115, 163, 380
BlsI	GCNGC	3 cut(s)	116, 164, 381
Bme1390I	CCNGG	2 cut(s)	111, 179
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	160, 172
BmrFI	CCNGG	2 cut(s)	111, 179
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	100, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 314, 341
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	100, 109
BseLI	CCNNNNNNNGG	3 cut(s)	169, 314, 341
BseMII	CTCAG	2 cut(s)	259, 336
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	4 cut(s)	35, 38, 80, 399
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	4 cut(s)	105, 117, 162, 197
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	169, 314, 341
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	105, 117, 162, 197
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	114, 163
BspANI	GGCC	4 cut(s)	105, 117, 162, 197
BspCNI	CTCAG	2 cut(s)	258, 335
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	100, 109
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	67, 232
Bst6I	CTCTTC	5 cut(s)	29, 44, 125, 190, 282
BstDEI	CTNAG	2 cut(s)	245, 322
BstEII	GGTNACC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	109, 177
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	105, 117, 162, 197
Cfr13I	GGNCC	2 cut(s)	160, 172
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	245, 322
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	5 cut(s)	29, 44, 125, 190, 282
EarI	CTCTTC	5 cut(s)	29, 44, 125, 190, 282
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	194, 375
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	115, 163, 380
Fsp4HI	GCNGC	3 cut(s)	115, 163, 380
GluI	GCNGC	3 cut(s)	115, 163, 380
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	105, 117, 162, 197
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	4 cut(s)	182, 208, 280, 318
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	175, 217
Hpy188I	TCNGA	3 cut(s)	9, 236, 279
Hpy188III	TCNNGA	4 cut(s)	94, 149, 205, 284
Hpy8I	GTNNAC	2 cut(s)	175, 217
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	67, 232
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	245, 322
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	6 cut(s)	107, 124, 164, 191, 321, 327
Lsp1109I	GCAGC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	67, 303, 416
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	8 cut(s)	16, 31, 47, 112, 177, 299, 330, 413
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	2 cut(s)	437, 458
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	111, 179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	208, 280, 318
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	116, 164, 381
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	160, 172
PspXI	VCTCGAGB	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	115, 163, 380
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	160, 172
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	111, 179
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	167, 423
SmoI	CTYRAG	2 cut(s)	167, 423
Sse9I	AATT	2 cut(s)	437, 458
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	114, 163
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	109, 177
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	67, 232
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	150, 168, 204, 222
TasI	AATT	2 cut(s)	437, 458
TauI	GCSGC	2 cut(s)	117, 165
TfiI	GAWTC	3 cut(s)	208, 280, 318
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.