MD10G1309500.v1.1

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010974
Physical Location & Seq
Forward (+)
39434230 .. 39434727
498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1309500.v1.1.491

Sequence Viewer

Length: 498 bp
ATGTCTCTGACACCAATATCTTTGCTCACTCTCTGTATCCTTCTCCTTCTCCTTCTTCCTCCCACCGCCACCCTAACCCTCCACAACCTCCTCCAAAGCCAAGGCCTCCCTGCCGGGCTCTTCCCGGACAATGTGAAGTCCTACAATCTCGACCAGATGGGCCACCTGGAGGTGCATCTGGACCGTTCTTGCATGACCAAGTTCGAGACAAGAGTTTACTTTGAGAGCATAGTCAGAGCTAATCTCAGCTATGGCGTGCTCAGAGGCTTGAAGGGTTTGACTCAGGAGGAGCTTTTTCTTTGGCTGCCGGTGAAGGGAATCTCAGTGAGCGATCCGTCTTCTGGGTTGATTTTGTTTGACATTGGTGTTGCCCATAAGCAGCTTTCTCTCTCTCTATTTGAAGAGCCCCCTGTCTGCAAGCCTCAATCTCAAGGTACTAAAAAAATCCCATCTTTTTATTCTCTTTTTCTCTCTACAAATTCAGTAGACTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

166

Amino Acids

18.29

Weight (kDa)

6.4

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 134 6.9e-29 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61667 AT1G61667
fragaria_vesca FvH4_3g03180
malus_domestica MD05G1334600.v1.1 MD10G1309500.v1.1
prunus_persica Prupe.4G030700_v2.0.a1
pyrus_communis pycom05g30610 pycom10g26090
rosa_chinensis RchiOBHm_Chr5g0004811
rosa_laevigata RLG00000031262
rosa_multiflora Rmu_co7972276.1_g000001 Rmu_sc0008308.1_g000015 Rmu_sc0010871.1_g000007
rosa_roxburghii Rroxscaffold_1G00070800
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041800 Rh5BG041500 Rh5CG045400 Rh5DG041900
rosa_wichuraiana Rw5G004050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 486
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 478
AfaI GTAC 2 cut(s) 436, 494
AfiI CCNNNNNNNGG 3 cut(s) 169, 314, 341
AgsI TTSAA 2 cut(s) 271, 401
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 4 cut(s) 239, 249, 292, 382
AluI AGCT 4 cut(s) 239, 249, 292, 382
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 9, 200
AlwI GGATC 1 cut(s) 326
AoxI GGCC 2 cut(s) 103, 160
ApeKI GCWGC 2 cut(s) 304, 379
ApoI RAATTY 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 160, 181
AsuC2I CCSGG 2 cut(s) 115, 125
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 181
BanII GRGCYC 2 cut(s) 120, 408
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 291, 391
BccI CCATC 2 cut(s) 151, 457
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 47
BcnI CCSGG 2 cut(s) 115, 125
BcoDI GTCTC 2 cut(s) 9, 200
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 2 cut(s) 305, 380
BlsI GCNGC 2 cut(s) 306, 381
Bme1390I CCNGG 3 cut(s) 115, 125, 167
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 160, 181
BmrFI CCNGG 3 cut(s) 115, 125, 167
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 115, 125
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 314, 341
Bse118I RCCGGY 1 cut(s) 307
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 169, 314, 341
BseMII CTCAG 4 cut(s) 259, 274, 296, 336
BseRI GAGGAG 2 cut(s) 80, 302
BseXI GCAGC 2 cut(s) 291, 391
BshFI GGCC 2 cut(s) 105, 162
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 3 cut(s) 114, 125, 308
BslI CCNNNNNNNGG 3 cut(s) 169, 314, 341
BsmAI GTCTC 2 cut(s) 9, 200
BsnI GGCC 2 cut(s) 105, 162
Bsp1286I GDGCHC 3 cut(s) 120, 261, 408
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 105, 162
BspCNI CTCAG 4 cut(s) 258, 273, 295, 335
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 2 cut(s) 125, 396
BsrFI RCCGGY 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 125, 396
BstC8I GCNNGC 2 cut(s) 257, 419
BstDEI CTNAG 4 cut(s) 245, 260, 282, 322
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 9, 200
BstMBI GATC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 113, 123, 165
BstV1I GCAGC 2 cut(s) 291, 391
BstV2I GAAGAC 1 cut(s) 330
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 105, 162
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 257, 419
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 160, 181
Csp6I GTAC 2 cut(s) 435, 493
CviAII CATG 1 cut(s) 193
CviQI GTAC 2 cut(s) 435, 493
DdeI CTNAG 4 cut(s) 245, 260, 282, 322
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 125, 396
EarI CTCTTC 2 cut(s) 125, 396
Eco130I CCWWGG 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 2 cut(s) 120, 408
Eco47I GGWCC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 120, 408
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 194, 230, 252, 375
FatI CATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 305, 380
FriOI GRGCYC 2 cut(s) 120, 408
Fsp4HI GCNGC 2 cut(s) 305, 380
GluI GCNGC 2 cut(s) 305, 380
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 2 cut(s) 105, 162
HapII CCGG 3 cut(s) 114, 125, 308
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 280, 318
HpaII CCGG 3 cut(s) 114, 125, 308
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 217, 487
Hpy188I TCNGA 3 cut(s) 9, 236, 263
Hpy188III TCNNGA 4 cut(s) 149, 179, 205, 284
Hpy8I GTNNAC 2 cut(s) 217, 487
HpyAV CCTTC 5 cut(s) 50, 56, 62, 265, 307
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 175, 192, 417
HpyF3I CTNAG 4 cut(s) 245, 260, 282, 322
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 331
LguI GCTCTTC 2 cut(s) 125, 396
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 291, 391
LweI GCATC 1 cut(s) 184
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 47, 112, 330, 413
MhlI GDGCHC 3 cut(s) 120, 261, 408
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 9 cut(s) 69, 89, 98, 101, 116, 163, 257, 280, 432
MspI CCGG 3 cut(s) 114, 125, 308
MspR9I CCNGG 3 cut(s) 115, 125, 167
MvaI CCWGG 1 cut(s) 167
NciI CCSGG 2 cut(s) 115, 125
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 105
PciSI GCTCTTC 2 cut(s) 125, 396
PfeI GAWTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 2 cut(s) 306, 381
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 2 cut(s) 160, 181
RsaI GTAC 2 cut(s) 436, 494
RsaNI GTAC 2 cut(s) 435, 493
SapI GCTCTTC 2 cut(s) 125, 396
SatI GCNGC 2 cut(s) 305, 380
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 160, 181
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 3 cut(s) 115, 125, 167
SduI GDGCHC 3 cut(s) 120, 261, 408
SetI ASST 8 cut(s) 90, 168, 174, 241, 251, 294, 384, 436
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 1 cut(s) 478
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 113, 123, 165
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 150, 204
TasI AATT 1 cut(s) 478
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 1 cut(s) 318
TscAI CASTG 1 cut(s) 330
TseI GCWGC 2 cut(s) 304, 379
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.