AT1G61810

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017061
Physical Location & Seq
Forward (+)
22829921 .. 22834728
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61810.1

Sequence Viewer

Length: 1563 bp
ATGAAAAATTTAACCAGTTTCGTAATTGTTATCTTACTACAAAGCTTATTGTTTCATGTATATGGTCGTCATCAAAGTTCTTCGAAGAACATTTTAGTAGATTCATCTCCATTTCCTTCTGATTTCCTCTTTGGTACAGCTTCTTCCGCTTACCAGTATGAAGGTGCGTTCTTGACTGATGGAAAAAGTTTGAACAATTGGGATGTCTTTACGCATAAAAATCCTGGGAAAATACTTGACAAGAACAATGCAGATAGAGCTGTGGACCAATATAATCGATTTTTGGAGGACATCCAATTAATGTCTTTTCTTGGAGTGAACAGTTATAGGTTTTCAATTTCTTGGTGTAGAATCTTACCTAGAGGAAGATTTGGAGAGATTAATTATTTGGGGATAAAGTATTACAACATATTTATCGATGCTCTCATTAGTAGAGGGATTAAACCATTTGTGACGTTGAACCATGTCGACTATCCTCAAGAACTCGAGGACCGGTTTCAAAGTTGGTTAAACCCCGAGATGCAGAAGGAATTTGGTTATTTAGCCGATATATGTTTCAAGCATTTTGGAAACCGAGTTAAATACTGGACCACGCTTAACGAACCAAATCAACAATTAATCTTAGGCTATCTAACAGGTAAATTTCCACCCTCTCGTTGCTCCTCGCCATACGGGAACTGTAGCCAGGGGAATTCAGAAACCGAACCTTTCATAGCCGCACATAACATGATCCTTGCACACGCAAAAGCGGTTAACATATACAAGACCAAATATCAGAAAGAACAAAAGGGAAGCATTGGCATTGTGGTACAAACATCATGGTTTGAACCCATTAGTGATTCCAATGCGGATAAAGAAGCTGCTGAGAGAGCTCAATCATTTTACTCTAATTGGATTCTAGATCCCGTTATATATGGGAAATATCCAAAAGAAATGGTAGATATTCTTGGACCAGCCTTGCCACAATTTTCGAGCAATGAAGTGAAGAACTTAGAGAAGTCGAGGGCAGATTTCGTTGGTATTAATCACTATACAAGTTACTTCATTCAAGATTGTTTGACCTCTGCTTGTAATACTGGACATGGAGCTTTTAAGGCCGAAGGATATGCTCTCAAGTTAGACCGGAAAGGCAATGTTACTATAGGAGAACTTACCGATGTAAATTGGCAGCATATTGATCCCACAGGATTCCACAAGATGCTGAATTATTTAAAAGATAGGTACCCAAACATGCCAATGTTCATAACTGAAAACGGTTTTGGAGACTTGCAAAAACCTGAAACAACGGATAAAGAACTTCTAAATGATACAAAAAGGATCCAATACATGAGTGGATACTTAGAAGCTTTACAAGCAGCAATGAGGGATGGAGCAAATGTGAAGGGTTATTTTGTGTGGTCACTATTAGACAATTTTGAGTGGTTGTTCGGATACAAGGTTCGGTTTGGTCTATTCCATGTGGATCTAACAACTCTTAAAAGGTCACCGAAACAATCAGCTTCATGGTACAAAAATTATATCGAAGAACACGTGAATCGAAGAGATATCGTAGATAATTATTAA

Protein Analysis

520

Amino Acids

59.9

Weight (kDa)

7.2

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 510 1.5e-147 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1221
AccB1I GGYRCC 1 cut(s) 1221
AccI GTMKAC 1 cut(s) 468
AciI CCGC 4 cut(s) 147, 717, 749, 848
AclWI GGATC 6 cut(s) 724, 896, 1172, 1312, 1325, 1470
AcsI RAATTY 4 cut(s) 7, 530, 641, 691
AcvI CACGTG 1 cut(s) 1531
AfaI GTAC 4 cut(s) 136, 810, 1223, 1508
AflIII ACRYGT 1 cut(s) 1528
AgeI ACCGGT 1 cut(s) 492
AgsI TTSAA 7 cut(s) 193, 336, 460, 500, 559, 827, 1049
AjnI CCWGG 2 cut(s) 223, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 1242, 1274
AloI GAACNNNNNNTCC 2 cut(s) 1422, 1454
AluBI AGCT 8 cut(s) 45, 140, 260, 860, 872, 1088, 1346, 1499
AluI AGCT 8 cut(s) 45, 140, 260, 860, 872, 1088, 1346, 1499
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 1 cut(s) 1257
AlwI GGATC 6 cut(s) 724, 896, 1172, 1312, 1325, 1470
Ama87I CYCGRG 2 cut(s) 485, 515
AoxI GGCC 1 cut(s) 1095
ApeKI GCWGC 3 cut(s) 860, 1168, 1355
ApoI RAATTY 4 cut(s) 7, 530, 641, 691
AseI ATTAAT 4 cut(s) 299, 381, 617, 1023
AsiGI ACCGGT 1 cut(s) 492
Asp718I GGTACC 1 cut(s) 1221
AspS9I GGNCC 4 cut(s) 265, 490, 588, 950
AsuHPI GGTGA 1 cut(s) 1476
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 2 cut(s) 485, 515
AvaII GGWCC 4 cut(s) 265, 490, 588, 950
BamHI GGATCC 1 cut(s) 1317
BanI GGYRCC 1 cut(s) 1221
BanII GRGCYC 1 cut(s) 874
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbrPI CACGTG 1 cut(s) 1531
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 3 cut(s) 847, 1180, 1367
BccI CCATC 2 cut(s) 173, 1361
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BciT130I CCWGG 2 cut(s) 225, 686
BciVI GTATCC 2 cut(s) 1328, 1424
BcoDI GTCTC 1 cut(s) 1257
BfaI CTAG 2 cut(s) 360, 899
BfmI CTRYAG 2 cut(s) 679, 1140
BfuI GTATCC 2 cut(s) 1328, 1424
BisI GCNGC 4 cut(s) 717, 861, 1169, 1356
BlsI GCNGC 4 cut(s) 718, 862, 1170, 1357
Bme1390I CCNGG 2 cut(s) 225, 686
Bme18I GGWCC 4 cut(s) 265, 490, 588, 950
BmeT110I CYCGRG 2 cut(s) 485, 515
BmgT120I GGNCC 4 cut(s) 265, 490, 588, 950
BmiI GGNNCC 2 cut(s) 1223, 1319
BmrFI CCNGG 2 cut(s) 225, 686
BmsI GCATC 3 cut(s) 409, 510, 1188
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 462, 1097
Bsa29I ATCGAT 2 cut(s) 277, 417
BsaAI YACGTR 1 cut(s) 1531
BsaJI CCNNGG 2 cut(s) 224, 685
BsaWI WCCGGW 2 cut(s) 492, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 4 cut(s) 15, 154, 590, 1081
Bse3DI GCAATG 3 cut(s) 982, 1138, 1365
BseBI CCWGG 2 cut(s) 225, 686
BseCI ATCGAT 2 cut(s) 277, 417
BseDI CCNNGG 2 cut(s) 224, 685
BseGI GGATG 3 cut(s) 208, 291, 1372
BseMI GCAATG 3 cut(s) 982, 1138, 1365
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 4 cut(s) 15, 154, 590, 1081
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 3 cut(s) 847, 1180, 1367
BshFI GGCC 1 cut(s) 1097
BshNI GGYRCC 1 cut(s) 1221
BshTI ACCGGT 1 cut(s) 492
BshVI ATCGAT 2 cut(s) 277, 417
BsiHKAI GWGCWC 1 cut(s) 874
BsiHKCI CYCGRG 2 cut(s) 485, 515
BsiSI CCGG 2 cut(s) 493, 1123
BsmAI GTCTC 1 cut(s) 1257
BsnI GGCC 1 cut(s) 1097
BsoBI CYCGRG 2 cut(s) 485, 515
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 874
Bsp143I GATC 5 cut(s) 729, 901, 1177, 1317, 1462
BspACI CCGC 4 cut(s) 147, 717, 749, 848
BspANI GGCC 1 cut(s) 1097
BspCNI CTCAG 1 cut(s) 856
BspDI ATCGAT 2 cut(s) 277, 417
BspLI GGNNCC 2 cut(s) 1223, 1319
BspPI GGATC 6 cut(s) 724, 896, 1172, 1312, 1325, 1470
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 1221
BsrDI GCAATG 3 cut(s) 982, 1138, 1365
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 4 cut(s) 15, 154, 590, 1081
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 224, 685
BssMI GATC 5 cut(s) 729, 901, 1177, 1317, 1462
Bst2UI CCWGG 2 cut(s) 225, 686
Bst4CI ACNGT 3 cut(s) 323, 680, 1256
Bst6I CTCTTC 1 cut(s) 1534
BstBAI YACGTR 1 cut(s) 1531
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 4 cut(s) 622, 864, 991, 1339
BstEII GGTNACC 1 cut(s) 1482
BstF5I GGATG 3 cut(s) 208, 291, 1372
BstKTI GATC 5 cut(s) 732, 904, 1180, 1320, 1465
BstMAI GTCTC 1 cut(s) 1257
BstMBI GATC 5 cut(s) 729, 901, 1177, 1317, 1462
BstMWI GCNNNNNNNGC 5 cut(s) 146, 257, 869, 1094, 1352
BstNI CCWGG 2 cut(s) 225, 686
BstNSI RCATGY 1 cut(s) 1234
BstPI GGTNACC 1 cut(s) 1482
BstSCI CCNGG 2 cut(s) 223, 684
BstSFI CTRYAG 2 cut(s) 679, 1140
BstV1I GCAGC 3 cut(s) 847, 1180, 1367
BstX2I RGATCY 3 cut(s) 901, 1317, 1462
BstYI RGATCY 3 cut(s) 901, 1317, 1462
Bsu15I ATCGAT 2 cut(s) 277, 417
BsuI GTATCC 2 cut(s) 1328, 1424
BsuRI GGCC 1 cut(s) 1097
BsuTUI ATCGAT 2 cut(s) 277, 417
BtsCI GGATG 3 cut(s) 208, 291, 1372
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 4 cut(s) 265, 490, 588, 950
ClaI ATCGAT 2 cut(s) 277, 417
Csp6I GTAC 4 cut(s) 135, 809, 1222, 1507
CspAI ACCGGT 1 cut(s) 492
CviAII CATG 9 cut(s) 56, 464, 727, 819, 1082, 1231, 1327, 1457, 1503
CviQI GTAC 4 cut(s) 135, 809, 1222, 1507
DdeI CTNAG 4 cut(s) 622, 864, 991, 1339
DpnI GATC 5 cut(s) 731, 903, 1179, 1319, 1464
DpnII GATC 5 cut(s) 729, 901, 1177, 1317, 1462
DraI TTTAAA 1 cut(s) 1212
Eam1104I CTCTTC 1 cut(s) 1534
EarI CTCTTC 1 cut(s) 1534
Ecl136II GAGCTC 1 cut(s) 872
Eco24I GRGCYC 1 cut(s) 874
Eco32I GATATC 1 cut(s) 1546
Eco47I GGWCC 4 cut(s) 265, 490, 588, 950
Eco53kI GAGCTC 1 cut(s) 872
Eco72I CACGTG 1 cut(s) 1531
Eco88I CYCGRG 2 cut(s) 485, 515
Eco91I GGTNACC 1 cut(s) 1482
EcoICRI GAGCTC 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 1482
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 223, 684
EcoRV GATATC 1 cut(s) 1546
EcoT38I GRGCYC 1 cut(s) 874
FaeI CATG 9 cut(s) 59, 467, 730, 822, 1085, 1234, 1330, 1460, 1506
FatI CATG 9 cut(s) 55, 463, 726, 818, 1081, 1230, 1326, 1456, 1502
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 717, 861, 1169, 1356
FokI GGATG 3 cut(s) 215, 278, 1379
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 4 cut(s) 717, 861, 1169, 1356
FspBI CTAG 2 cut(s) 360, 899
GluI GCNGC 4 cut(s) 717, 861, 1169, 1356
HaeIII GGCC 1 cut(s) 1097
HapII CCGG 2 cut(s) 493, 1123
Hin1II CATG 9 cut(s) 59, 467, 730, 822, 1085, 1234, 1330, 1460, 1506
HincII GTYRAC 2 cut(s) 469, 754
HindII GTYRAC 2 cut(s) 469, 754
HindIII AAGCTT 2 cut(s) 43, 1344
HinfI GANTC 6 cut(s) 101, 351, 839, 895, 1188, 1534
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 2 cut(s) 493, 1123
HphI GGTGA 1 cut(s) 1476
Hpy166II GTNNAC 4 cut(s) 265, 319, 469, 754
Hpy188I TCNGA 4 cut(s) 121, 697, 777, 1430
Hpy188III TCNNGA 4 cut(s) 172, 479, 899, 1049
Hpy8I GTNNAC 4 cut(s) 265, 319, 469, 754
HpyAV CCTTC 5 cut(s) 126, 155, 520, 1094, 1375
HpyCH4III ACNGT 3 cut(s) 323, 680, 1256
HpyCH4IV ACGT 2 cut(s) 455, 1530
HpyCH4V TGCA 4 cut(s) 251, 523, 737, 1270
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 257, 869, 1094, 1352
HpyF3I CTNAG 4 cut(s) 622, 864, 991, 1339
HpySE526I ACGT 2 cut(s) 455, 1530
Hsp92II CATG 9 cut(s) 59, 467, 730, 822, 1085, 1234, 1330, 1460, 1506
KpnI GGTACC 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 5 cut(s) 729, 901, 1177, 1317, 1462
LmnI GCTCC 3 cut(s) 665, 1085, 1370
Lsp1109I GCAGC 3 cut(s) 847, 1180, 1367
LweI GCATC 3 cut(s) 409, 510, 1188
MaeI CTAG 2 cut(s) 360, 899
MaeII ACGT 2 cut(s) 455, 1530
MaeIII GTNAC 5 cut(s) 451, 1037, 1135, 1398, 1482
MalI GATC 5 cut(s) 731, 903, 1179, 1319, 1464
MboI GATC 5 cut(s) 729, 901, 1177, 1317, 1462
MboII GAAGA 7 cut(s) 72, 97, 135, 378, 997, 1535, 1551
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 3 cut(s) 901, 1317, 1462
MhlI GDGCHC 1 cut(s) 874
MslI CAYNNNNRTG 2 cut(s) 60, 1235
MspI CCGG 2 cut(s) 493, 1123
MspR9I CCNGG 2 cut(s) 225, 686
MunI CAATTG 1 cut(s) 196
MvaI CCWGG 2 cut(s) 225, 686
MwoI GCNNNNNNNGC 5 cut(s) 146, 257, 869, 1094, 1352
NdeII GATC 5 cut(s) 729, 901, 1177, 1317, 1462
NlaIII CATG 9 cut(s) 59, 467, 730, 822, 1085, 1234, 1330, 1460, 1506
NlaIV GGNNCC 2 cut(s) 1223, 1319
NmuCI GTSAC 3 cut(s) 451, 1398, 1482
NspI RCATGY 1 cut(s) 1234
NspV TTCGAA 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 1527
PfeI GAWTC 6 cut(s) 101, 351, 839, 895, 1188, 1534
PinAI ACCGGT 1 cut(s) 492
PkrI GCNGC 4 cut(s) 718, 862, 1170, 1357
PmaCI CACGTG 1 cut(s) 1531
PmlI CACGTG 1 cut(s) 1531
Ppu21I YACGTR 1 cut(s) 1531
PshBI ATTAAT 4 cut(s) 299, 381, 617, 1023
Psp124BI GAGCTC 1 cut(s) 874
Psp6I CCWGG 2 cut(s) 223, 684
PspCI CACGTG 1 cut(s) 1531
PspEI GGTNACC 1 cut(s) 1482
PspGI CCWGG 2 cut(s) 223, 684
PspN4I GGNNCC 2 cut(s) 1223, 1319
PspPI GGNCC 4 cut(s) 265, 490, 588, 950
PspXI VCTCGAGB 1 cut(s) 485
PsuI RGATCY 3 cut(s) 901, 1317, 1462
RsaI GTAC 4 cut(s) 136, 810, 1223, 1508
RsaNI GTAC 4 cut(s) 135, 809, 1222, 1507
RseI CAYNNNNRTG 2 cut(s) 60, 1235
SacI GAGCTC 1 cut(s) 874
SalI GTCGAC 1 cut(s) 467
SatI GCNGC 4 cut(s) 717, 861, 1169, 1356
Sau3AI GATC 5 cut(s) 729, 901, 1177, 1317, 1462
Sau96I GGNCC 4 cut(s) 265, 490, 588, 950
ScrFI CCNGG 2 cut(s) 225, 686
SduI GDGCHC 1 cut(s) 874
SfaNI GCATC 3 cut(s) 409, 510, 1188
SfcI CTRYAG 2 cut(s) 679, 1140
Sfr274I CTCGAG 1 cut(s) 485
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 4 cut(s) 265, 490, 588, 950
SlaI CTCGAG 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 60, 1235
SmlI CTYRAG 3 cut(s) 477, 485, 1112
SmoI CTYRAG 3 cut(s) 477, 485, 1112
SsiI CCGC 4 cut(s) 147, 717, 749, 848
SspMI CTAG 2 cut(s) 360, 899
SstI GAGCTC 1 cut(s) 874
StyD4I CCNGG 2 cut(s) 223, 684
TaaI ACNGT 3 cut(s) 323, 680, 1256
TaiI ACGT 2 cut(s) 458, 1533
TaqI TCGA 9 cut(s) 83, 277, 417, 468, 486, 971, 1001, 1521, 1537
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 6 cut(s) 101, 351, 839, 895, 1188, 1534
TseFI GTSAC 3 cut(s) 451, 1398, 1482
TseI GCWGC 3 cut(s) 860, 1168, 1355
Tsp45I GTSAC 3 cut(s) 451, 1398, 1482
TspDTI ATGAA 9 cut(s) 17, 44, 93, 174, 700, 993, 1033, 1231, 1491
TspGWI ACGGA 1 cut(s) 1301
VpaK11BI GGWCC 4 cut(s) 265, 490, 588, 950
VspI ATTAAT 4 cut(s) 299, 381, 617, 1023
XapI RAATTY 4 cut(s) 7, 530, 641, 691
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 1 cut(s) 1234
XcmI CCANNNNNNNNNTGG 1 cut(s) 1328
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 2 cut(s) 360, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.