MD11G1240600.v1.1

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017061
Physical Location & Seq
Forward (+)
35002403 .. 35003201
799 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1240600.v1.1.491

Sequence Viewer

Length: 474 bp
ATGCGGCCCGTGTATGGAGAATACCCCGCTGAAATGCGCCAATGCCCTCGCTTGGAAATGCCAAGGTTCTTCCCCAAAGAAAAAGAGCTGTTAAGAGGCAGCATAGATTTCATCGGACTCAACCACTATACAACACTATATGCCAAGGACTGTTTCCACTCCCCTTGCCCCTCAGGCGGGGACCATGCCATTAGAGGCTACGTCAACACAACTGGGTATTGGGATGGCGCTGCGATTGGAGAACTGGTATATAAAACATTTACTATTAGTCTAACATGTTATGCTATTAGACCGTCAATTTTCATTCGATTATTGGTCCAAATAGGCACGTTAACATATTCATCTTGTTTTGTCTTTTCTAGACTGGAATCGCTAGGTTTTTTTGTTGCTCCAAGAGGCATGGAGAAGATTATAGACTATATTAAGCAAAGATACAATAACCTGCCCATGTTTGTTACTGAAAATGGTAAGTGA

Protein Analysis

158

Amino Acids

18.04

Weight (kDa)

8.8

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 4 - 50 4.7e-06 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
AciI CCGC 3 cut(s) 4, 27, 177
AfiI CCNNNNNNNGG 4 cut(s) 14, 52, 176, 177
AflIII ACRYGT 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 99, 230
AspLEI GCGC 2 cut(s) 39, 230
AspS9I GGNCC 3 cut(s) 6, 181, 316
AvaII GGWCC 2 cut(s) 181, 316
AxyI CCTNAGG 1 cut(s) 172
BbvI GCAGC 2 cut(s) 111, 217
BccI CCATC 1 cut(s) 218
BfaI CTAG 2 cut(s) 360, 374
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 450
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 5, 100, 231
BlsI GCNGC 3 cut(s) 6, 101, 232
Bme18I GGWCC 2 cut(s) 181, 316
BmgT120I GGNCC 3 cut(s) 6, 181, 316
BmiI GGNNCC 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 62, 144
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 52, 176, 177
Bse1I ACTGG 3 cut(s) 217, 249, 369
Bse21I CCTNAGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 62, 144
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 4 cut(s) 14, 52, 176, 177
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 217, 249, 369
BseXI GCAGC 2 cut(s) 111, 217
BshFI GGCC 1 cut(s) 7
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 14, 52, 176, 177
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 7
BspACI CCGC 3 cut(s) 4, 27, 177
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 450
BsrI ACTGG 3 cut(s) 217, 249, 369
BssECI CCNNGG 2 cut(s) 62, 144
BssT1I CCWWGG 2 cut(s) 62, 144
Bst4CI ACNGT 2 cut(s) 152, 294
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 39, 230
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 111, 217
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 450
CfoI GCGC 2 cut(s) 39, 230
Cfr13I GGNCC 3 cut(s) 6, 181, 316
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 4 cut(s) 185, 276, 400, 448
CviJI RGCY 3 cut(s) 7, 88, 198
CviKI_1 RGCY 3 cut(s) 7, 88, 198
DdeI CTNAG 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 62, 144
Eco47I GGWCC 2 cut(s) 181, 316
Eco81I CCTNAGG 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 62, 144
ErhI CCWWGG 2 cut(s) 62, 144
FaeI CATG 4 cut(s) 188, 279, 403, 451
FaqI GGGAC 1 cut(s) 194
FatI CATG 4 cut(s) 184, 275, 399, 447
FauI CCCGC 2 cut(s) 34, 170
Fnu4HI GCNGC 3 cut(s) 5, 100, 231
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 5, 100, 231
FspBI CTAG 2 cut(s) 360, 374
GlaI GCGC 2 cut(s) 38, 229
GluI GCNGC 3 cut(s) 5, 100, 231
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 7
HhaI GCGC 2 cut(s) 39, 230
Hin1II CATG 4 cut(s) 188, 279, 403, 451
Hin6I GCGC 2 cut(s) 37, 228
HinP1I GCGC 2 cut(s) 37, 228
HincII GTYRAC 2 cut(s) 205, 333
HindII GTYRAC 2 cut(s) 205, 333
HinfI GANTC 2 cut(s) 117, 368
HpaI GTTAAC 1 cut(s) 333
Hpy166II GTNNAC 2 cut(s) 205, 333
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 2 cut(s) 205, 333
HpyCH4III ACNGT 2 cut(s) 152, 294
HpyCH4IV ACGT 2 cut(s) 201, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 172
HpySE526I ACGT 2 cut(s) 201, 329
Hsp92II CATG 4 cut(s) 188, 279, 403, 451
HspAI GCGC 2 cut(s) 37, 228
KspAI GTTAAC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 5 cut(s) 159, 198, 230, 350, 455
Lsp1109I GCAGC 2 cut(s) 111, 217
MaeI CTAG 2 cut(s) 360, 374
MaeII ACGT 2 cut(s) 201, 329
MaeIII GTNAC 1 cut(s) 454
MboII GAAGA 2 cut(s) 61, 418
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 5 cut(s) 57, 89, 181, 188, 389
MseI TTAA 3 cut(s) 92, 332, 423
MspA1I CMGCKG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 174
NlaIII CATG 4 cut(s) 188, 279, 403, 451
NlaIV GGNNCC 1 cut(s) 182
NspI RCATGY 1 cut(s) 279
PciI ACATGT 1 cut(s) 275
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 3 cut(s) 6, 101, 232
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PscI ACATGT 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 3 cut(s) 6, 181, 316
SaqAI TTAA 3 cut(s) 92, 332, 423
SatI GCNGC 3 cut(s) 5, 100, 231
Sau96I GGNCC 3 cut(s) 6, 181, 316
SchI GAGTC 1 cut(s) 111
SetI ASST 6 cut(s) 68, 90, 204, 332, 379, 444
SinI GGWCC 2 cut(s) 181, 316
Sse9I AATT 1 cut(s) 297
SsiI CCGC 3 cut(s) 4, 27, 177
SspMI CTAG 2 cut(s) 360, 374
StyI CCWWGG 2 cut(s) 62, 144
TaaI ACNGT 2 cut(s) 152, 294
TaiI ACGT 2 cut(s) 204, 332
TaqI TCGA 1 cut(s) 307
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 3 cut(s) 92, 332, 423
Tru9I TTAA 3 cut(s) 92, 332, 423
TseI GCWGC 2 cut(s) 99, 230
TspDTI ATGAA 3 cut(s) 100, 292, 330
VpaK11BI GGWCC 2 cut(s) 181, 316
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 1 cut(s) 279
XspI CTAG 2 cut(s) 360, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.