Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017061

Physical Location & Seq

Genomic Coordinates Reverse (-)

11087505 .. 11091386

Gene Structure 3882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGCTCAGGGGAGGCTACCTCTTTTTCTTGTACTTGTCCTCTGTTTTCTTCATTTTCTCTGTTGAAGAACAAGTCCAAAGGTCTCAATTCCCAGATGACTTCTTCTTTGGTGCATCCACTTCATCTTATCAGGTTGAAGGTGCTTATCTTGAAGATGGTAAGGGCTTAAGCAACTGGGATTTTTTCACTCAAATTCCAGGAAAAATAGCGGATGATGACAATGGAGAAGTTGCAGACGACCATTACAACCGCTACTTGGAAGACATTGAGCTGATGCATTCCTTAGGAACAAATGCATACCGGTTCTCCATTTCCTGGGCTAGAATTCTACCTGATGGGATGCTGGGCTCAGTCAATCCAAGAGGGATCATCTTTTATAATAAACTTATAGACAATCTTCTAAGCAAAGGAATAGAGCCATTTGTGACAATTCACCACAATGACCTGCCCCAAGTACTAGAACAAAGAGACGGGGGTTGGCTCAGTCCGCTATTAAGGGAAGAGTTTGTACATTTTGCCTCCATATGCTTTGAGAGTTTTGGAGATAGGGTAAAGTACTGGGTTACCATAAATGAGCCCAATATGGTGGCTGATTTTGCCTATCTCAGAGGACTATTTCCACCGGCTCGTTGTTCTCCACCATTTGGCAATTGTTCCACTGGCAATTCTGACATTGAGCCTCTTATTGGAATGCACAACATGTTAATAGCACATGCTATGGCTGTTGAAATTTATCGTACTTTTTTCTGGCCGAAACAAAATGGATTTATAGGAATTGTTGCGCATGCATTCATGTATGAACCGCTTAGGGATGAAGAAAGGGATCGGGATGCTGTTGATAGAGCCTTAGCTTTCAATGTGGCCTGGACATTTGATCCTGTAGTGTATGGAGATTACCCCGCTGAAATGCGCCATTGCCATGGCTTGGAGTTACCAAGGTTTTCCGCCAAAGAGAAACAGCTTTTGAGAGGAAGCATAGATTTTATCGGTGTCAACCACTATTCAACTCTATATGTCAAGGACTGTATTCACTCTCCTTGCCCCTCTGGGGGTGACCGTCCCATCATGGGATTTCTCAACACAACTGGGTATCGAGATGGGGTTCCAATTGGAGAACCGACTGGACTGGCTGATTTCTTTGTTGTTCCAAGAGGCATGGAGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

392

Amino Acids

44.44

Weight (kDa)

4.94

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61820 AT1G61820
malus_domestica	MD11G1240600.v1.1 MD11G1240900.v1.1
prunus_persica	Prupe.4G186400_v2.0.a1 Prupe.4G186600_v2.0.a1
pyrus_communis	pycom11g21240 pycom11g21250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
Acc16I	TGCGCA	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	456
AccB7I	CCANNNNNTGG	3 cut(s)	318, 647, 928
AciI	CCGC	6 cut(s)	212, 253, 491, 806, 903, 948
AclWI	GGATC	3 cut(s)	377, 834, 872
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	3 cut(s)	195, 327, 732
AfaI	GTAC	5 cut(s)	35, 459, 513, 560, 742
AfiI	CCNNNNNNNGG	8 cut(s)	259, 318, 647, 689, 928, 1051, 1052, 1070
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	702
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	6 cut(s)	68, 140, 155, 731, 859, 1008
AjnI	CCWGG	3 cut(s)	199, 317, 866
AluBI	AGCT	4 cut(s)	7, 274, 854, 964
AluI	AGCT	4 cut(s)	7, 274, 854, 964
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	90, 465
AlwI	GGATC	3 cut(s)	377, 834, 872
AoxI	GGCC	2 cut(s)	752, 864
ApoI	RAATTY	3 cut(s)	195, 327, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AsiGI	ACCGGT	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	787, 915
AsuHPI	GGTGA	2 cut(s)	428, 1067
AxyI	CCTNAGG	1 cut(s)	286
BanII	GRGCYC	3 cut(s)	9, 353, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	4 cut(s)	152, 332, 1073, 1094
BciT130I	CCWGG	3 cut(s)	201, 319, 868
BcoDI	GTCTC	2 cut(s)	90, 465
BfaI	CTAG	2 cut(s)	324, 461
BfmI	CTRYAG	1 cut(s)	882
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	456
BmcAI	AGTACT	2 cut(s)	459, 560
Bme1390I	CCNGG	3 cut(s)	201, 319, 868
BmiI	GGNNCC	1 cut(s)	1107
BmrFI	CCNGG	3 cut(s)	201, 319, 868
BmrI	ACTGGG	3 cut(s)	187, 571, 1098
BmsI	GCATC	4 cut(s)	125, 267, 333, 823
BmuI	ACTGGG	3 cut(s)	187, 571, 1098
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	8, 809, 850
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	318, 922, 938
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 537, 567
Bsc4I	CCNNNNNNNGG	8 cut(s)	259, 318, 647, 689, 928, 1051, 1052, 1070
Bse118I	RCCGGY	2 cut(s)	303, 625
Bse1I	ACTGG	6 cut(s)	182, 566, 667, 1093, 1129, 1134
Bse21I	CCTNAGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	916
BseBI	CCWGG	3 cut(s)	201, 319, 868
BseDI	CCNNGG	3 cut(s)	318, 922, 938
BseGI	GGATG	5 cut(s)	116, 220, 348, 820, 838
BseLI	CCNNNNNNNGG	8 cut(s)	259, 318, 647, 689, 928, 1051, 1052, 1070
BseMI	GCAATG	1 cut(s)	916
BseMII	CTCAG	4 cut(s)	22, 366, 499, 622
BseNI	ACTGG	6 cut(s)	182, 566, 667, 1093, 1129, 1134
BseYI	CCCAGC	1 cut(s)	346
BshFI	GGCC	2 cut(s)	754, 866
BshTI	ACCGGT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	304, 626
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	8 cut(s)	259, 318, 647, 689, 928, 1051, 1052, 1070
BsmAI	GTCTC	2 cut(s)	90, 465
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	1047
BsmI	GAATGC	3 cut(s)	280, 699, 791
BsnI	GGCC	2 cut(s)	754, 866
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	9, 353, 582
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	369, 826, 877, 1167
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	6 cut(s)	212, 253, 491, 806, 903, 948
BspANI	GGCC	2 cut(s)	754, 866
BspCNI	CTCAG	4 cut(s)	21, 365, 498, 621
BspLI	GGNNCC	1 cut(s)	1107
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	3 cut(s)	377, 834, 872
BspTI	CTTAAG	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	916
BsrFI	RCCGGY	2 cut(s)	303, 625
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	6 cut(s)	182, 566, 667, 1093, 1129, 1134
BssAI	RCCGGY	2 cut(s)	303, 625
BssECI	CCNNGG	3 cut(s)	318, 922, 938
BssMI	GATC	4 cut(s)	369, 826, 877, 1167
BssT1I	CCWWGG	2 cut(s)	922, 938
Bst2UI	CCWGG	3 cut(s)	201, 319, 868
Bst4CI	ACNGT	2 cut(s)	1028, 1061
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	8 cut(s)	8, 286, 352, 404, 485, 608, 809, 850
BstDSI	CCRYGG	1 cut(s)	922
BstEII	GGTNACC	2 cut(s)	565, 1055
BstF5I	GGATG	5 cut(s)	116, 220, 348, 820, 838
BstHHI	GCGC	2 cut(s)	787, 915
BstKTI	GATC	4 cut(s)	372, 829, 880, 1170
BstMAI	GTCTC	2 cut(s)	90, 465
BstMBI	GATC	4 cut(s)	369, 826, 877, 1167
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 599
BstNI	CCWGG	3 cut(s)	201, 319, 868
BstNSI	RCATGY	3 cut(s)	706, 719, 791
BstPI	GGTNACC	2 cut(s)	565, 1055
BstSCI	CCNGG	3 cut(s)	199, 317, 866
BstSFI	CTRYAG	1 cut(s)	882
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	2 cut(s)	589, 923
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	754, 866
BtgI	CCRYGG	1 cut(s)	922
BtsCI	GGATG	5 cut(s)	116, 220, 348, 820, 838
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	789
CfoI	GCGC	2 cut(s)	787, 915
Cfr10I	RCCGGY	2 cut(s)	303, 625
Csp6I	GTAC	5 cut(s)	34, 458, 512, 559, 741
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	7 cut(s)	703, 716, 788, 796, 923, 1069, 1159
CviQI	GTAC	5 cut(s)	34, 458, 512, 559, 741
DdeI	CTNAG	8 cut(s)	8, 286, 352, 404, 485, 608, 809, 850
DpnI	GATC	4 cut(s)	371, 828, 879, 1169
DpnII	GATC	4 cut(s)	369, 826, 877, 1167
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	937
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	922, 938
Eco24I	GRGCYC	3 cut(s)	9, 353, 582
Eco31I	GGTCTC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	7
Eco81I	CCTNAGG	1 cut(s)	286
Eco91I	GGTNACC	2 cut(s)	565, 1055
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	2 cut(s)	565, 1055
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	3 cut(s)	199, 317, 866
EcoT14I	CCWWGG	2 cut(s)	922, 938
EcoT22I	ATGCAT	3 cut(s)	282, 301, 793
EcoT38I	GRGCYC	3 cut(s)	9, 353, 582
ErhI	CCWWGG	2 cut(s)	922, 938
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	7 cut(s)	706, 719, 791, 799, 926, 1072, 1162
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	7 cut(s)	702, 715, 787, 795, 922, 1068, 1158
FauI	CCCGC	1 cut(s)	910
FauNDI	CATATG	1 cut(s)	527
FokI	GGATG	5 cut(s)	103, 227, 355, 827, 845
FriOI	GRGCYC	3 cut(s)	9, 353, 582
FspBI	CTAG	2 cut(s)	324, 461
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	2 cut(s)	786, 914
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	754, 866
HapII	CCGG	2 cut(s)	304, 626
HhaI	GCGC	2 cut(s)	787, 915
Hin1II	CATG	7 cut(s)	706, 719, 791, 799, 926, 1072, 1162
Hin6I	GCGC	2 cut(s)	785, 913
HinP1I	GCGC	2 cut(s)	785, 913
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HpaII	CCGG	2 cut(s)	304, 626
HphI	GGTGA	2 cut(s)	428, 1067
Hpy166II	GTNNAC	1 cut(s)	997
Hpy188I	TCNGA	2 cut(s)	611, 673
Hpy188III	TCNNGA	3 cut(s)	152, 830, 1097
Hpy8I	GTNNAC	1 cut(s)	997
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	1028, 1061
HpyCH4V	TGCA	6 cut(s)	116, 236, 280, 299, 697, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 599
HpyF3I	CTNAG	8 cut(s)	8, 286, 352, 404, 485, 608, 809, 850
Hsp92II	CATG	7 cut(s)	706, 719, 791, 799, 926, 1072, 1162
HspAI	GCGC	2 cut(s)	785, 913
Kzo9I	GATC	4 cut(s)	369, 826, 877, 1167
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	4 cut(s)	125, 267, 333, 823
MaeI	CTAG	2 cut(s)	324, 461
MaeIII	GTNAC	4 cut(s)	427, 565, 933, 1055
MalI	GATC	4 cut(s)	371, 828, 879, 1169
MboI	GATC	4 cut(s)	369, 826, 877, 1167
MboII	GAAGA	8 cut(s)	43, 80, 97, 167, 275, 392, 515, 830
MfeI	CAATTG	3 cut(s)	652, 1110, 1171
MhlI	GDGCHC	3 cut(s)	9, 353, 582
Mph1103I	ATGCAT	3 cut(s)	282, 301, 793
MseI	TTAA	3 cut(s)	170, 497, 707
MslI	CAYNNNNRTG	2 cut(s)	441, 921
MspA1I	CMGCKG	1 cut(s)	905
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	2 cut(s)	304, 626
MspR9I	CCNGG	3 cut(s)	201, 319, 868
MunI	CAATTG	3 cut(s)	652, 1110, 1171
Mva1269I	GAATGC	3 cut(s)	280, 699, 791
MvaI	CCWGG	3 cut(s)	201, 319, 868
MwoI	GCNNNNNNNGC	2 cut(s)	490, 599
NcoI	CCATGG	1 cut(s)	922
NdeI	CATATG	1 cut(s)	527
NdeII	GATC	4 cut(s)	369, 826, 877, 1167
NlaIII	CATG	7 cut(s)	706, 719, 791, 799, 926, 1072, 1162
NlaIV	GGNNCC	1 cut(s)	1107
NmuCI	GTSAC	2 cut(s)	427, 1055
NsbI	TGCGCA	1 cut(s)	786
NsiI	ATGCAT	3 cut(s)	282, 301, 793
NspI	RCATGY	3 cut(s)	706, 719, 791
PaeI	GCATGC	1 cut(s)	791
PciI	ACATGT	1 cut(s)	702
PctI	GAATGC	3 cut(s)	280, 699, 791
PflMI	CCANNNNNTGG	3 cut(s)	318, 647, 928
PfoI	TCCNGGA	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	303
PscI	ACATGT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	199, 317, 866
PspEI	GGTNACC	2 cut(s)	565, 1055
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	3 cut(s)	199, 317, 866
PspN4I	GGNNCC	1 cut(s)	1107
RsaI	GTAC	5 cut(s)	35, 459, 513, 560, 742
RsaNI	GTAC	5 cut(s)	34, 458, 512, 559, 741
RseI	CAYNNNNRTG	2 cut(s)	441, 921
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	170, 497, 707
Sau3AI	GATC	4 cut(s)	369, 826, 877, 1167
ScaI	AGTACT	2 cut(s)	459, 560
ScrFI	CCNGG	3 cut(s)	201, 319, 868
SduI	GDGCHC	3 cut(s)	9, 353, 582
SfaNI	GCATC	4 cut(s)	125, 267, 333, 823
SfcI	CTRYAG	1 cut(s)	882
SmiMI	CAYNNNNRTG	2 cut(s)	441, 921
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SphI	GCATGC	1 cut(s)	791
SsiI	CCGC	6 cut(s)	212, 253, 491, 806, 903, 948
SspMI	CTAG	2 cut(s)	324, 461
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	199, 317, 866
StyI	CCWWGG	2 cut(s)	922, 938
TaaI	ACNGT	2 cut(s)	1028, 1061
TaqI	TCGA	1 cut(s)	1096
TatI	WGTACW	4 cut(s)	33, 457, 511, 558
Tru1I	TTAA	3 cut(s)	170, 497, 707
Tru9I	TTAA	3 cut(s)	170, 497, 707
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	2 cut(s)	427, 1055
Tsp45I	GTSAC	2 cut(s)	427, 1055
TspDTI	ATGAA	5 cut(s)	43, 114, 784, 816, 831
TspRI	CASTG	1 cut(s)	667
Van91I	CCANNNNNTGG	3 cut(s)	318, 647, 928
Vha464I	CTTAAG	1 cut(s)	169
XapI	RAATTY	3 cut(s)	195, 327, 732
XceI	RCATGY	3 cut(s)	706, 719, 791
XspI	CTAG	2 cut(s)	324, 461
ZrmI	AGTACT	2 cut(s)	459, 560
Zsp2I	ATGCAT	3 cut(s)	282, 301, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.