Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0017061

Physical Location & Seq

Genomic Coordinates Forward (+)

24385881 .. 24389238

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGAAATTTACTGGAGGCTTGCTCTATTTCTTGTCGCTCTCGGTTATCTTATTGTCTACTGCTTTAGTTGCAGCTCAGAGTTTCAAACTAGATGAAGAAGAAATCCAGAAATCTCAGTTCCCAGATGGCTTCTTGTTTGGAGCAAGCACTTCATCTTATCAGATTGAAGGTGCTTATCATGAAGATGGAAAGAGCCTAAGCAACTGGGATGTTTATACTCACATTCCAGGAAAAATAGAGGACAATGAGACTGGAGATGTTGCAGATGACCACTACCATCGCTACTTGGAGGACATTGAGTTGATACATTCTCTGGGGATGAATGCATATCGGTTCTCCATTTCATGGGCTAGAATTCTACCTGACGGCAAACTCGGCAAAATCAATCCAAGAGGGATCGTATTTTATAATAAACTTATTGACCATCTTGTGAGCAAAGGAATAGAGCCATTTGTGACACTTAACCACAATGACATGCCCTATTTACTAGATGCAAGAGATAGGGGTTGGCTTAGTCCACTCTTACGGGAAGAATTTGCACATTTTGCCTCCATATGCTTCAAGAGCTTTGGGGACAGGGTGAAACACTGGATTACCGTCAATGAAGCCAACATGCTGGTTGATTTTACTTACATACAAGGAGTATACCCACCTGCTCGTTGCACGCCCCCTTTTGGGAATTGTTCAAGTGGCAATTCTGATGTAGAGCCTCTCATTGCAATGCACAACATTTTAATAGCTCATGCCATGGCAGTTGACACATATCGGAGGCTTTTTCAGCCAAAACAACATGGGTTTGTCGGAATTATTACACATTGTCACTGGTATGAACCTCTTCGAGACGATGAAAGGGACCTGCATGCTGTTGATAGAGTCTTAGCTTTCAATGCGGCCTGGGTGTTGGATCCTTTAGTGTATGGAGAATACCCCGCTGAAATGCGCCAATGCCCTCGCTTGGAAATGCCAAGGTTCTCCCCCAAAGAAAAAGAGCTGTTAAGAGGCAGCATAGATTTCATCGGACTCAACCACTATACAACACTATATGCCAAGGACTGTTTCCACTCCCCTTGCCCCTCAGGCGGAGACCATGCCATTAGAGGCTACGTCAACACAACCGGCTATCGGGATGGCACTGCGATTGGAGAACCGACTGGAGTCGCTAGGTTTTTTGTTGTTCCAAGAGGCATGGAGAAGATTATAGACTATCTTAAGCGAAGATACAATAACCTGCCCATGTTTGTTACTGAAAATGGATACTCCTCACCGACACCCCAGAATGAACGACAAGACCGGAATCGGATCAAGTTTCACAAAGGCTACCTTGCTTTTTTAGCCAAAGCAATAAGGAATGGTGCTGATGTACGTGGCTATTTCATTTGGAGCTTGATGGATAATTTTGAATGGCTTGGTGGGTATGAAACAAAATTTGGTATAGTTTATGTTGATCGTAATAAAACGCTGGAGCGAACTCCAAAGCTTTCTGCAAGGTGGTTTAGTAGTTTCATCAGAAACAATAGTCACAACGAGGAGGAAATTAGTGCAGCTTCTTCAGGTCACTCCAACAAAAATACACTATTTAGCCAATTGCAACCGAAAGTTGCTGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

537

Amino Acids

61.28

Weight (kDa)

6.4

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61820 AT1G61820
malus_domestica	MD11G1240600.v1.1 MD11G1240900.v1.1
prunus_persica	Prupe.4G186400_v2.0.a1 Prupe.4G186600_v2.0.a1
pyrus_communis	pycom11g21240 pycom11g21250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	3 cut(s)	661, 864, 1236
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccI	GTMKAC	2 cut(s)	56, 645
AciI	CCGC	3 cut(s)	890, 930, 1080
AclWI	GGATC	4 cut(s)	404, 899, 912, 1307
AcsI	RAATTY	4 cut(s)	5, 354, 533, 1424
AcuI	CTGAAG	1 cut(s)	1533
AfaI	GTAC	1 cut(s)	1362
AfiI	CCNNNNNNNGG	6 cut(s)	345, 674, 675, 955, 1079, 1122
AflII	CTTAAG	1 cut(s)	1208
AgsI	TTSAA	6 cut(s)	85, 167, 562, 687, 886, 1400
AjnI	CCWGG	2 cut(s)	226, 893
AjuI	GAANNNNNNNTTGG	4 cut(s)	1040, 1072, 1410, 1442
AluBI	AGCT	8 cut(s)	74, 567, 740, 881, 991, 1383, 1477, 1544
AluI	AGCT	8 cut(s)	74, 567, 740, 881, 991, 1383, 1477, 1544
Alw26I	GTCTC	3 cut(s)	242, 834, 1077
AlwI	GGATC	4 cut(s)	404, 899, 912, 1307
AoxI	GGCC	1 cut(s)	891
ApeKI	GCWGC	3 cut(s)	71, 1002, 1541
ApoI	RAATTY	4 cut(s)	5, 354, 533, 1424
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	2 cut(s)	592, 1254
AvaII	GGWCC	1 cut(s)	853
AxyI	CCTNAGG	1 cut(s)	1075
BamHI	GGATCC	1 cut(s)	904
BbvI	GCAGC	3 cut(s)	83, 1014, 1553
BccI	CCATC	6 cut(s)	119, 179, 285, 432, 1121, 1381
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	228, 895
BciVI	GTATCC	1 cut(s)	1247
BcoDI	GTCTC	3 cut(s)	242, 834, 1077
BfaI	CTAG	4 cut(s)	89, 351, 488, 1161
BfrI	CTTAAG	1 cut(s)	1208
BfuAI	ACCTGC	3 cut(s)	661, 864, 1236
BfuI	GTATCC	1 cut(s)	1247
BglI	GCCNNNNNGGC	1 cut(s)	1077
BisI	GCNGC	4 cut(s)	72, 891, 1003, 1542
BlsI	GCNGC	4 cut(s)	73, 892, 1004, 1543
Bme1390I	CCNGG	2 cut(s)	228, 895
Bme18I	GGWCC	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	854, 906
BmrFI	CCNGG	2 cut(s)	228, 895
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	1154
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	4 cut(s)	33, 273, 1173, 1481
Bpu10I	CCTNAGC	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	1364
BsaI	GGTCTC	1 cut(s)	1077
BsaJI	CCNNGG	4 cut(s)	747, 894, 965, 1047
BsaWI	WCCGGW	1 cut(s)	1290
Bsc4I	CCNNNNNNNGG	6 cut(s)	345, 674, 675, 955, 1079, 1122
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	6 cut(s)	16, 209, 256, 593, 827, 1156
Bse21I	CCTNAGG	1 cut(s)	1075
Bse3DI	GCAATG	2 cut(s)	714, 726
BseBI	CCWGG	2 cut(s)	228, 895
BseDI	CCNNGG	4 cut(s)	747, 894, 965, 1047
BseGI	GGATG	3 cut(s)	214, 324, 1132
BseLI	CCNNNNNNNGG	6 cut(s)	345, 674, 675, 955, 1079, 1122
BseMI	GCAATG	2 cut(s)	714, 726
BseMII	CTCAG	3 cut(s)	89, 128, 1089
BseNI	ACTGG	6 cut(s)	16, 209, 256, 593, 827, 1156
BseRI	GAGGAG	2 cut(s)	1249, 1541
BseXI	GCAGC	3 cut(s)	83, 1014, 1553
BsgI	GTGCAG	1 cut(s)	1560
BshFI	GGCC	1 cut(s)	893
BsiSI	CCGG	2 cut(s)	1116, 1291
BslFI	GGGAC	2 cut(s)	587, 866
BslI	CCNNNNNNNGG	6 cut(s)	345, 674, 675, 955, 1079, 1122
BsmAI	GTCTC	3 cut(s)	242, 834, 1077
BsmBI	CGTCTC	1 cut(s)	834
BsmFI	GGGAC	2 cut(s)	587, 866
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	893
Bso31I	GGTCTC	1 cut(s)	1077
Bsp143I	GATC	4 cut(s)	396, 904, 1299, 1444
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	890, 930, 1080
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	3 cut(s)	88, 127, 1088
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	854, 906
BspMI	ACCTGC	3 cut(s)	661, 864, 1236
BspPI	GGATC	4 cut(s)	404, 899, 912, 1307
BspTI	CTTAAG	1 cut(s)	1208
BspTNI	GGTCTC	1 cut(s)	1077
BsrDI	GCAATG	2 cut(s)	714, 726
BsrFI	RCCGGY	1 cut(s)	1115
BsrI	ACTGG	6 cut(s)	16, 209, 256, 593, 827, 1156
BssAI	RCCGGY	1 cut(s)	1115
BssECI	CCNNGG	4 cut(s)	747, 894, 965, 1047
BssMI	GATC	4 cut(s)	396, 904, 1299, 1444
BssNAI	GTATAC	1 cut(s)	646
BssT1I	CCWWGG	3 cut(s)	747, 965, 1047
Bst1107I	GTATAC	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	228, 895
Bst4CI	ACNGT	2 cut(s)	598, 1055
Bst6I	CTCTTC	1 cut(s)	840
BstAFI	CTTAAG	1 cut(s)	1208
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	1364
BstC8I	GCNNGC	4 cut(s)	20, 145, 665, 861
BstDEI	CTNAG	6 cut(s)	75, 114, 197, 512, 877, 1075
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	214, 324, 1132
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	4 cut(s)	399, 907, 1302, 1447
BstMAI	GTCTC	3 cut(s)	242, 834, 1077
BstMBI	GATC	4 cut(s)	396, 904, 1299, 1444
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 375, 545, 564, 778, 887, 1077, 1331
BstNI	CCWGG	2 cut(s)	228, 895
BstNSI	RCATGY	3 cut(s)	478, 616, 863
BstPAI	GACNNNNGTC	1 cut(s)	1154
BstSCI	CCNGG	2 cut(s)	226, 893
BstV1I	GCAGC	3 cut(s)	83, 1014, 1553
BstX2I	RGATCY	1 cut(s)	904
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	904
BstZ17I	GTATAC	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	1075
BsuI	GTATCC	1 cut(s)	1247
BsuRI	GGCC	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	747
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	214, 324, 1132
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	3 cut(s)	586, 820, 1131
BveI	ACCTGC	3 cut(s)	661, 864, 1236
Cac8I	GCNNGC	4 cut(s)	20, 145, 665, 861
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	942
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	1361
CspCI	CAANNNNNGTGG	2 cut(s)	1049, 1084
CviQI	GTAC	1 cut(s)	1361
DdeI	CTNAG	6 cut(s)	75, 114, 197, 512, 877, 1075
DpnI	GATC	4 cut(s)	398, 906, 1301, 1446
DpnII	GATC	4 cut(s)	396, 904, 1299, 1444
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	1095
Eco130I	CCWWGG	3 cut(s)	747, 965, 1047
Eco31I	GGTCTC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	1533
Eco81I	CCTNAGG	1 cut(s)	1075
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	226, 893
EcoT14I	CCWWGG	3 cut(s)	747, 965, 1047
EcoT22I	ATGCAT	1 cut(s)	328
ErhI	CCWWGG	3 cut(s)	747, 965, 1047
Esp3I	CGTCTC	1 cut(s)	834
FalI	AAGNNNNNCTT	2 cut(s)	1305, 1337
FaqI	GGGAC	2 cut(s)	587, 866
FauI	CCCGC	1 cut(s)	937
FauNDI	CATATG	1 cut(s)	554
FblI	GTMKAC	2 cut(s)	56, 645
Fnu4HI	GCNGC	4 cut(s)	72, 891, 1003, 1542
FokI	GGATG	3 cut(s)	221, 331, 1139
Fsp4HI	GCNGC	4 cut(s)	72, 891, 1003, 1542
FspBI	CTAG	4 cut(s)	89, 351, 488, 1161
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	4 cut(s)	72, 891, 1003, 1542
GsuI	CTGGAG	4 cut(s)	33, 273, 1173, 1481
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	2 cut(s)	1116, 1291
HhaI	GCGC	1 cut(s)	942
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HincII	GTYRAC	2 cut(s)	757, 1108
HindII	GTYRAC	2 cut(s)	757, 1108
HindIII	AAGCTT	1 cut(s)	1475
HinfI	GANTC	4 cut(s)	873, 1020, 1155, 1294
HpaII	CCGG	2 cut(s)	1116, 1291
HphI	GGTGA	2 cut(s)	592, 1254
Hpy166II	GTNNAC	5 cut(s)	57, 518, 646, 757, 1108
Hpy188I	TCNGA	8 cut(s)	78, 162, 700, 768, 803, 1019, 1299, 1508
Hpy188III	TCNNGA	5 cut(s)	106, 179, 562, 839, 1124
Hpy8I	GTNNAC	5 cut(s)	57, 518, 646, 757, 1108
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	598, 1055
HpyCH4IV	ACGT	2 cut(s)	1104, 1363
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 375, 545, 564, 778, 887, 1077, 1331
HpyF3I	CTNAG	6 cut(s)	75, 114, 197, 512, 877, 1075
HpySE526I	ACGT	2 cut(s)	1104, 1363
HspAI	GCGC	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	396, 904, 1299, 1444
LmnI	GCTCC	3 cut(s)	140, 1380, 1462
Lsp1109I	GCAGC	3 cut(s)	83, 1014, 1553
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	4 cut(s)	89, 351, 488, 1161
MaeII	ACGT	2 cut(s)	1104, 1363
MaeIII	GTNAC	5 cut(s)	454, 818, 1240, 1517, 1553
MalI	GATC	4 cut(s)	398, 906, 1301, 1446
MboI	GATC	4 cut(s)	396, 904, 1299, 1444
MboII	GAAGA	8 cut(s)	107, 110, 194, 542, 827, 1204, 1227, 1539
MfeI	CAATTG	1 cut(s)	1583
MflI	RGATCY	1 cut(s)	904
MlyI	GAGTC	3 cut(s)	882, 1014, 1164
MmeI	TCCRAC	3 cut(s)	781, 882, 1584
Mph1103I	ATGCAT	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	4 cut(s)	462, 734, 995, 1209
MslI	CAYNNNNRTG	3 cut(s)	183, 719, 825
MspA1I	CMGCKG	1 cut(s)	932
MspCI	CTTAAG	1 cut(s)	1208
MspI	CCGG	2 cut(s)	1116, 1291
MspR9I	CCNGG	2 cut(s)	228, 895
MunI	CAATTG	1 cut(s)	1583
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	228, 895
MwoI	GCNNNNNNNGC	8 cut(s)	68, 375, 545, 564, 778, 887, 1077, 1331
NcoI	CCATGG	1 cut(s)	747
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	4 cut(s)	396, 904, 1299, 1444
NlaIV	GGNNCC	2 cut(s)	854, 906
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	4 cut(s)	454, 818, 1517, 1553
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	3 cut(s)	478, 616, 863
PaeI	GCATGC	1 cut(s)	863
PagI	TCATGA	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	661
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	1294
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	73, 892, 1004, 1543
PleI	GAGTC	3 cut(s)	881, 1014, 1163
PpsI	GAGTC	3 cut(s)	881, 1014, 1163
Ppu21I	YACGTR	1 cut(s)	1364
PpuMI	RGGWCCY	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	1154
PsiI	TTATAA	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	2 cut(s)	226, 893
PspGI	CCWGG	2 cut(s)	226, 893
PspN4I	GGNNCC	2 cut(s)	854, 906
PspPI	GGNCC	1 cut(s)	853
PspPPI	RGGWCCY	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	904
RsaI	GTAC	1 cut(s)	1362
RsaNI	GTAC	1 cut(s)	1361
RseI	CAYNNNNRTG	3 cut(s)	183, 719, 825
SaqAI	TTAA	4 cut(s)	462, 734, 995, 1209
SatI	GCNGC	4 cut(s)	72, 891, 1003, 1542
Sau3AI	GATC	4 cut(s)	396, 904, 1299, 1444
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	3 cut(s)	882, 1014, 1164
ScrFI	CCNGG	2 cut(s)	228, 895
SfaNI	GCATC	1 cut(s)	481
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	3 cut(s)	183, 719, 825
SmlI	CTYRAG	1 cut(s)	1208
SmoI	CTYRAG	1 cut(s)	1208
SphI	GCATGC	1 cut(s)	863
SsiI	CCGC	3 cut(s)	890, 930, 1080
SspMI	CTAG	4 cut(s)	89, 351, 488, 1161
StyD4I	CCNGG	2 cut(s)	226, 893
StyI	CCWWGG	3 cut(s)	747, 965, 1047
TaaI	ACNGT	2 cut(s)	598, 1055
TaiI	ACGT	2 cut(s)	1107, 1366
TaqI	TCGA	1 cut(s)	838
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	1 cut(s)	1294
Tru1I	TTAA	4 cut(s)	462, 734, 995, 1209
Tru9I	TTAA	4 cut(s)	462, 734, 995, 1209
TscAI	CASTG	3 cut(s)	593, 827, 1138
TseFI	GTSAC	4 cut(s)	454, 818, 1517, 1553
TseI	GCWGC	3 cut(s)	71, 1002, 1541
Tsp45I	GTSAC	4 cut(s)	454, 818, 1517, 1553
TspRI	CASTG	3 cut(s)	593, 827, 1138
Van91I	CCANNNNNTGG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	1208
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	4 cut(s)	5, 354, 533, 1424
XceI	RCATGY	3 cut(s)	478, 616, 863
XmiI	GTMKAC	2 cut(s)	56, 645
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	4 cut(s)	89, 351, 488, 1161
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.