Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017061

Physical Location & Seq

Genomic Coordinates Reverse (-)

11093783 .. 11095088

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGAATGGGTATGTCTGCAGACGACCATTACCATCGCTACTTGGAAGACATTGAGCTGATGCATTCCCTGGGAATGAATTCATATCGCTTCTCTATTTCATGGGCTAGAATTCTACCCGATGGGATGCTCGGCAAAACCAATCCAAGTGGGATCACCTTTTATAACAAACTTATAGACCATCTGTTGCTCAAAGGGATTGAGCCATTTGTGACAGTTCACCACTATGACATGCCCCAAGTTCTAGAACAAAGAGATGGGGGTTGGCTTAGTCCACTCTTACGGAGTTTTGGGGACAGGGTGAAGTACTGGATTACCTTCAATGAGCCCAATCTCATGATTGAGTTTGCCTATATAAGGGGATGGTACCCACCAGCTCGTTGTTCAGCCCCTTTTGGGAACTGTTCAAGTGGAAATTCTTATACTGAGCCTCTCATTGCAATGCACAACATTTTAATAGCTCATGCGATGGCGGTTGACACATATCGTAGGGTTTTTTGGCCAAAACAGCATGGGTTTATTGGAATTGTTGCAAATGCACACATGTATGAACCGCTGAGAGATGATGAAAGGGATTGGCATGCTGTTGATAGAGCTTTGGCTTTCAGTGTCGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

207

Amino Acids

23.84

Weight (kDa)

6.4

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61810 AT1G61820 AT1G61820
malus_domestica	MD11G1240600.v1.1 MD11G1240900.v1.1
prunus_persica	Prupe.4G186400_v2.0.a1 Prupe.4G186600_v2.0.a1
pyrus_communis	pycom11g21240 pycom11g21250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
Acc65I	GGTACC	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	366
AciI	CCGC	2 cut(s)	473, 554
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	79, 111, 415
AfaI	GTAC	2 cut(s)	308, 368
AfiI	CCNNNNNNNGG	2 cut(s)	357, 396
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	2 cut(s)	322, 408
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	58, 377, 461, 596
AluI	AGCT	4 cut(s)	58, 377, 461, 596
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	500
ApoI	RAATTY	3 cut(s)	79, 111, 415
Asp700I	GAANNNNTTC	1 cut(s)	79
Asp718I	GGTACC	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	148, 212, 313
BalI	TGGCCA	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	54
BccI	CCATC	6 cut(s)	42, 116, 189, 251, 357, 463
BciT130I	CCWGG	1 cut(s)	71
BfaI	CTAG	2 cut(s)	108, 245
BfmI	CTRYAG	1 cut(s)	18
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	51, 117
BpiI	GAAGAC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	69, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 396
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	435, 447
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	69, 70
BseGI	GGATG	2 cut(s)	132, 368
BseLI	CCNNNNNNNGG	2 cut(s)	357, 396
BseMI	GCAATG	2 cut(s)	435, 447
BseMII	CTCAG	2 cut(s)	417, 548
BseNI	ACTGG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	357, 396
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	473, 554
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	2 cut(s)	418, 549
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	368
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	435, 447
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	69, 70
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	217, 404
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	3 cut(s)	269, 426, 557
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	132, 368
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	4 cut(s)	235, 547, 584, 618
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	502
BtgZI	GCGATG	2 cut(s)	20, 482
BtsCI	GGATG	2 cut(s)	132, 368
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	582
CciI	TCATGA	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	307, 367
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	8 cut(s)	102, 232, 337, 464, 512, 544, 581, 615
CviQI	GTAC	2 cut(s)	307, 367
DdeI	CTNAG	3 cut(s)	269, 426, 557
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRI	GAATTC	2 cut(s)	79, 111
EcoRII	CCWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	8 cut(s)	105, 235, 340, 467, 515, 547, 584, 618
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	8 cut(s)	101, 231, 336, 463, 511, 543, 580, 614
FokI	GGATG	2 cut(s)	139, 375
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	108, 245
HaeIII	GGCC	1 cut(s)	502
Hin1II	CATG	8 cut(s)	105, 235, 340, 467, 515, 547, 584, 618
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HphI	GGTGA	3 cut(s)	148, 212, 313
Hpy166II	GTNNAC	3 cut(s)	220, 275, 478
Hpy188III	TCNNGA	2 cut(s)	245, 337
Hpy8I	GTNNAC	3 cut(s)	220, 275, 478
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	217, 404
HpyCH4V	TGCA	6 cut(s)	20, 64, 440, 445, 533, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	269, 426, 557
Hsp92II	CATG	8 cut(s)	105, 235, 340, 467, 515, 547, 584, 618
KpnI	GGTACC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	5 cut(s)	56, 83, 283, 295, 387
LweI	GCATC	2 cut(s)	51, 117
MaeI	CTAG	2 cut(s)	108, 245
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	4 cut(s)	79, 111, 415, 525
MluNI	TGGCCA	1 cut(s)	502
MnlI	CCTC	1 cut(s)	441
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	2 cut(s)	455, 619
MslI	CAYNNNNRTG	3 cut(s)	225, 440, 546
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	556
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	8 cut(s)	105, 235, 340, 467, 515, 547, 584, 618
NlaIV	GGNNCC	1 cut(s)	368
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	4 cut(s)	235, 547, 584, 618
PaeI	GCATGC	1 cut(s)	584
PagI	TCATGA	1 cut(s)	336
PasI	CCCWGGG	1 cut(s)	70
PciI	ACATGT	1 cut(s)	543
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	308, 368
RsaNI	GTAC	2 cut(s)	307, 367
RseI	CAYNNNNRTG	3 cut(s)	225, 440, 546
SaqAI	TTAA	2 cut(s)	455, 619
Sau3AI	GATC	1 cut(s)	153
ScaI	AGTACT	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	60, 161, 320, 379, 463, 598
SfaNI	GCATC	2 cut(s)	51, 117
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	225, 440, 546
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	4 cut(s)	79, 111, 415, 525
SsiI	CCGC	2 cut(s)	473, 554
SspMI	CTAG	2 cut(s)	108, 245
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	217, 404
TasI	AATT	4 cut(s)	79, 111, 415, 525
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	455, 619
Tru9I	TTAA	2 cut(s)	455, 619
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	5 cut(s)	72, 90, 92, 564, 582
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	3 cut(s)	79, 111, 415
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	4 cut(s)	235, 547, 584, 618
XmnI	GAANNNNTTC	1 cut(s)	79
XspI	CTAG	2 cut(s)	108, 245
ZrmI	AGTACT	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.