AT1G63060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016588
Physical Location & Seq
Forward (+)
23383971 .. 23385109
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63060.1

Sequence Viewer

Length: 447 bp
ATGGCTTTCAGAATCACCAGCCAATTGCGACCGGTCGGAAATCAATTTGGTGGCTCTCGTCGTTTTGCAACCACAGTCGCCGATGGCGCCAAACAAACATATAACAAGTTCTCCATAATGGGAGAGTTTGCACCAGTGGCTATAATAGGAGGTTTTGTTGGTTTAGCGGTACTAATGGCCGGGCATAGCCTCAAGCAACAGCTTATGCATGCACCGGCAATCAGTACAAGAAAGAATAGAAGAGCGGCTGTCGCGGAAGTCGATGATCCAGAAAACTGTGTTTCCTCTGCTGACAAATTTATCAACAAGTCTTGGTTACGTAAAGTAGGTCAGATTCAAGATAAATCTAAGGCAATCTTATCTGATCCCACTCGACCTAACCCATTCACCACGCCTCGAAATGCAGAGACATTGAACTCCGTCGGCGTGGCTCCAAAGGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.96

Weight (kDa)

10.39

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 245
AccII CGCG 1 cut(s) 254
AciI CCGC 3 cut(s) 167, 245, 254
AclWI GGATC 2 cut(s) 260, 359
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 171, 226
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 2 cut(s) 338, 415
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 2 cut(s) 260, 359
AoxI GGCC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 7, 379
BanI GGYRCC 1 cut(s) 86
BccI CCATC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 88, 432
BmrFI CCNGG 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 141, 171
Bse118I RCCGGY 2 cut(s) 31, 214
Bse1I ACTGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 32, 36
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 86
BshTI ACCGGT 1 cut(s) 31
BsiEI CGRYCG 2 cut(s) 32, 36
BsiSI CCGG 3 cut(s) 32, 180, 215
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 265, 364
BspACI CCGC 3 cut(s) 167, 245, 254
BspANI GGCC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 88, 432
BspPI GGATC 2 cut(s) 260, 359
BspQI GCTCTTC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 245
BsrFI RCCGGY 2 cut(s) 31, 214
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 2 cut(s) 31, 214
BssMI GATC 2 cut(s) 265, 364
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 76, 278
Bst6I CTCTTC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 348
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 268, 367
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 2 cut(s) 265, 364
BstMCI CGRYCG 2 cut(s) 32, 36
BstMWI GCNNNNNNNGC 3 cut(s) 86, 137, 251
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 179
BstSNI TACGTA 1 cut(s) 320
BstUI CGCG 1 cut(s) 254
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 2 cut(s) 31, 214
Csp6I GTAC 2 cut(s) 170, 225
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 1 cut(s) 209
CviJI RGCY 9 cut(s) 5, 21, 54, 140, 179, 189, 202, 248, 431
CviKI_1 RGCY 9 cut(s) 5, 21, 54, 140, 179, 189, 202, 248, 431
CviQI GTAC 2 cut(s) 170, 225
DdeI CTNAG 1 cut(s) 348
DinI GGCGCC 1 cut(s) 88
DpnI GATC 2 cut(s) 267, 366
DpnII GATC 2 cut(s) 265, 364
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
FaeI CATG 1 cut(s) 212
FaiI YATR 7 cut(s) 100, 102, 116, 143, 186, 206, 210
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 179
HapII CCGG 3 cut(s) 32, 180, 215
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 3 cut(s) 12, 334, 441
HpaII CCGG 3 cut(s) 32, 180, 215
HphI GGTGA 2 cut(s) 7, 379
Hpy188I TCNGA 5 cut(s) 11, 38, 333, 364, 446
Hpy188III TCNNGA 2 cut(s) 269, 338
Hpy99I CGWCG 2 cut(s) 63, 425
HpyCH4III ACNGT 2 cut(s) 76, 278
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 68, 131, 208, 212, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 137, 251
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 87
KasI GGCGCC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 265, 364
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 6 cut(s) 31, 45, 147, 193, 228, 282
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 267, 366
MbiI CCGCTC 1 cut(s) 245
MboI GATC 2 cut(s) 265, 364
MboII GAAGA 1 cut(s) 252
MfeI CAATTG 1 cut(s) 23
MluCI AATT 3 cut(s) 23, 44, 296
Mly113I GGCGCC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 143, 200, 295, 405
Mph1103I ATGCAT 1 cut(s) 210
MspI CCGG 3 cut(s) 32, 180, 215
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 23
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 86, 137, 251
NarI GGCGCC 1 cut(s) 87
NciI CCSGG 1 cut(s) 181
NdeII GATC 2 cut(s) 265, 364
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 88, 432
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 3 cut(s) 12, 334, 441
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 88, 432
RsaI GTAC 2 cut(s) 171, 226
RsaNI GTAC 2 cut(s) 170, 225
SapI GCTCTTC 1 cut(s) 235
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 265, 364
ScrFI CCNGG 1 cut(s) 181
SetI ASST 5 cut(s) 154, 204, 322, 331, 379
SfoI GGCGCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SnaBI TACGTA 1 cut(s) 320
SphI GCATGC 1 cut(s) 212
Sse9I AATT 3 cut(s) 23, 44, 296
SsiI CCGC 3 cut(s) 167, 245, 254
SspDI GGCGCC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 76, 278
TaiI ACGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 261, 373, 397
TasI AATT 3 cut(s) 23, 44, 296
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 3 cut(s) 12, 334, 441
TscAI CASTG 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.