Prupe.1G212400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016588
Physical Location & Seq
Reverse (-)
22587414 .. 22589224
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G212400.1

Sequence Viewer

Length: 495 bp
ATGGCTTTGAGGGCAACCAACAATTGGAGATCTATGCTGGTTCGGTTGGGAGAGAACCGAGCTTTTGCAACCTCAACCGCTCCCAAGATGAAACCCATTACACAAAACCTTCATGCAAGTGAACCTACTGGGTCTACCTTCCGCCGTATCAGGAAATTTCTTACAAAGCCAGAGAATGCACCGATTGCCATAGTGCTAGGGTTTATTACGGTGCCTATTATTATTGGGTTGCACAGCCTCAAACAGCAGCTGATGCATGCCCCGAGCGTCGTCTTCGATAAGAAGAAGAGGGAATCCATGTTCGAGGTCGAGCAACCAGATGTTGCCGTGAGCTCATCCGACAGGTTTATCAACAAATCTTTCCTCAGGAAGGTGGGTCGTATCCAGGATCCTGGCAACCCCACCATGCCTGATCCAGTCCAGCGTGACGCTTTCACTAGGCCTCGCACTGCGGAGACGCTCAAGACTGCTGGAGTGGACCCAAGCCGTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.42

Weight (kDa)

11.1

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 24
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 134
AciI CCGC 3 cut(s) 78, 142, 452
AclWI GGATC 3 cut(s) 383, 396, 407
AcsI RAATTY 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 24, 370
AjnI CCWGG 2 cut(s) 384, 391
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 3 cut(s) 62, 250, 333
AluI AGCT 3 cut(s) 62, 250, 333
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 3 cut(s) 383, 396, 407
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 478
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 365
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 259
BceAI ACGGC 3 cut(s) 129, 311, 471
BciT130I CCWGG 2 cut(s) 386, 393
BciVI GTATCC 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 197, 438
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 1 cut(s) 29
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 2 cut(s) 386, 393
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 3 cut(s) 213, 390, 480
BmrFI CCNGG 2 cut(s) 386, 393
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 370
Bse1I ACTGG 2 cut(s) 133, 416
Bse21I CCTNAGG 1 cut(s) 365
BseBI CCWGG 2 cut(s) 386, 393
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 24, 370
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 2 cut(s) 133, 416
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 24, 370
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 29, 388, 412
BspACI CCGC 3 cut(s) 78, 142, 452
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 213, 390, 480
BspPI GGATC 3 cut(s) 383, 396, 407
BspT107I GGYRCC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 80
BsrI ACTGG 2 cut(s) 133, 416
BssMI GATC 3 cut(s) 29, 388, 412
Bst2UI CCWGG 2 cut(s) 386, 393
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 185, 253
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 365
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 3 cut(s) 32, 391, 415
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 29, 388, 412
BstMWI GCNNNNNNNGC 3 cut(s) 11, 185, 253
BstNI CCWGG 2 cut(s) 386, 393
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 384, 391
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 2 cut(s) 29, 388
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 2 cut(s) 29, 388
Bsu36I CCTNAGG 1 cut(s) 365
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 3 cut(s) 256, 437, 466
CviAII CATG 4 cut(s) 113, 257, 298, 406
CviJI RGCY 8 cut(s) 5, 62, 169, 237, 250, 333, 442, 486
CviKI_1 RGCY 8 cut(s) 5, 62, 169, 237, 250, 333, 442, 486
DdeI CTNAG 1 cut(s) 365
DpnI GATC 3 cut(s) 31, 390, 414
DpnII GATC 3 cut(s) 29, 388, 412
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 384, 391
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 4 cut(s) 116, 260, 301, 409
FaiI YATR 6 cut(s) 35, 114, 191, 258, 299, 407
FatI CATG 4 cut(s) 112, 256, 297, 405
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 197, 438
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 442
HgaI GACGC 3 cut(s) 256, 437, 466
Hin1II CATG 4 cut(s) 116, 260, 301, 409
HinfI GANTC 1 cut(s) 293
Hpy166II GTNNAC 3 cut(s) 122, 135, 478
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 151, 367, 463
Hpy8I GTNNAC 3 cut(s) 122, 135, 478
Hpy99I CGWCG 2 cut(s) 272, 492
HpyAV CCTTC 3 cut(s) 119, 148, 364
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 68, 116, 179, 232, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 185, 253
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 4 cut(s) 116, 260, 301, 409
Kzo9I GATC 3 cut(s) 29, 388, 412
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 197, 438
MaeIII GTNAC 1 cut(s) 425
MalI GATC 3 cut(s) 31, 390, 414
MbiI CCGCTC 1 cut(s) 80
MboI GATC 3 cut(s) 29, 388, 412
MboII GAAGA 3 cut(s) 265, 295, 298
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 2 cut(s) 29, 388
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 2 cut(s) 22, 155
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 7 cut(s) 3, 82, 248, 282, 298, 374, 453
Mph1103I ATGCAT 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 2 cut(s) 386, 393
MunI CAATTG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 2 cut(s) 386, 393
MwoI GCNNNNNNNGC 3 cut(s) 11, 185, 253
NdeII GATC 3 cut(s) 29, 388, 412
NlaIII CATG 4 cut(s) 116, 260, 301, 409
NlaIV GGNNCC 3 cut(s) 213, 390, 480
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 442
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 24
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 384, 391
PspGI CCWGG 2 cut(s) 384, 391
PspN4I GGNNCC 3 cut(s) 213, 390, 480
PspPI GGNCC 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 29, 388
PvuII CAGCTG 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 335
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 3 cut(s) 29, 388, 412
Sau96I GGNCC 1 cut(s) 478
ScrFI CCNGG 2 cut(s) 386, 393
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 1 cut(s) 478
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SphI GCATGC 1 cut(s) 260
Sse9I AATT 2 cut(s) 22, 155
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 3 cut(s) 78, 142, 452
SspMI CTAG 2 cut(s) 197, 438
SstI GAGCTC 1 cut(s) 335
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 2 cut(s) 384, 391
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 3 cut(s) 276, 303, 309
TasI AATT 2 cut(s) 22, 155
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 101, 104
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 478
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 2 cut(s) 197, 438
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.