Rmu_co8298239.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298239.1
OG0016588
Physical Location & Seq
Forward (+)
1 .. 354
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298239.1_g000001.1.cds

Sequence Viewer

Length: 252 bp
caacaactggtgcattcccccgtcgtcaacttccgcaagactaagagggaatcggtaccggaggtggatgatcccgatgctgtcgtcggctctgctgacaagttcatcagcaagtctttcctcaggaaagtcgctcatatccaggacaacaccaacaccgtccacgacccctcccgccctaacccttttactgcgccacgcaaggcggagacgctcaagtccgttggagtggagccaagcagtcgctattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

9.52

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 3 cut(s) 34, 175, 206
AclWI GGATC 1 cut(s) 65
AfaI GTAC 1 cut(s) 57
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 57, 234
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 12
Bse21I CCTNAGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 3 cut(s) 34, 175, 206
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 57, 234
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 42, 122
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 73
CfoI GCGC 1 cut(s) 196
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 56
CviJI RGCY 2 cut(s) 90, 235
CviKI_1 RGCY 2 cut(s) 90, 235
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 42, 122
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
EciI GGCGGA 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 203
FaiI YATR 1 cut(s) 138
FauI CCCGC 1 cut(s) 182
FokI GGATG 1 cut(s) 80
GlaI GCGC 1 cut(s) 195
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 28, 163
Hpy188III TCNNGA 2 cut(s) 74, 124
Hpy8I GTNNAC 2 cut(s) 28, 163
Hpy99I CGWCG 2 cut(s) 26, 89
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 42, 122
HspAI GCGC 1 cut(s) 194
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 72, 109, 128, 155
LweI GCATC 1 cut(s) 67
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 4 cut(s) 39, 55, 131, 181
MseI TTAA 1 cut(s) 250
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 143
NdeII GATC 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 57, 234
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 57, 234
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 250
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 143
SetI ASST 1 cut(s) 66
SfaNI GCATC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 3 cut(s) 34, 175, 206
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.