Rh4BG289200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016588
Physical Location & Seq
Reverse (-)
46208881 .. 46209956
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG289200.1

Sequence Viewer

Length: 504 bp
ATGGCTTCAAGAGCAGCGAACTACTGCAGATCAGTGCTGACCCAGTTGGGAGAGAAGCGGTCGTTTGCAACCTCAACCATCCCCAAGATGAGACCAGCAACCGCACATGTTTCTTCTCTATCAGATAAAGAACAAAAAATACTTGACAAAGTGGAAAAAAGGGCTGCTCTTATGAAGGCCGAGAATGCACCCATTTGGATTGTAGCCGGAATGGTAGGGGCGGCAGTGTTAATAGCGATTCACACTGCAAAACAACAACTGGTGCATTCCCCCGTCGTCAACTTCCGCAAGACTAAGAGGGAATCGGTACCGGAGGTGGATGATCCCGATGCGGTCGTCGGCTCTGCTGACAAGTTCATCAGCAAGTCTTTCCTCAGGAAAGTCGCTCATATCCAGGACAACACCAACACCGTCCGCGACCCCTCCCGCCCTAACCCTTTTACTGCGCCACGCAAGGCGGAGACGCTCAAGTCCGTTGGAGTGGAGCCAAGCAGTCGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.31

Weight (kDa)

10.05

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 469
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 417
AciI CCGC 8 cut(s) 58, 102, 221, 286, 332, 415, 427, 458
AclWI GGATC 1 cut(s) 317
AfaI GTAC 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 85, 455
AlwI GGATC 1 cut(s) 317
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 14, 164
Asp718I GGTACC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 374
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 26, 151
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 85, 455
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 3 cut(s) 15, 165, 222
BlsI GCNGC 3 cut(s) 16, 166, 223
Bme1390I CCNGG 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 309, 486
BmrFI CCNGG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 43, 264
Bse21I CCTNAGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 78, 325
BseMII CTCAG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 43, 264
BseXI GCAGC 2 cut(s) 26, 151
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 2 cut(s) 62, 336
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 2 cut(s) 62, 336
BsiSI CCGG 2 cut(s) 207, 311
BsmAI GTCTC 2 cut(s) 85, 455
BsmBI CGTCTC 1 cut(s) 455
BsmI GAATGC 2 cut(s) 190, 265
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 29, 322
BspACI CCGC 8 cut(s) 58, 102, 221, 286, 332, 415, 427, 458
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 309, 486
BspMAI CTGCAG 1 cut(s) 29
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 43, 264
BssMI GATC 2 cut(s) 29, 322
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 294, 374
BstF5I GGATG 2 cut(s) 78, 325
BstFNI CGCG 1 cut(s) 417
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 2 cut(s) 32, 325
BstMAI GTCTC 2 cut(s) 85, 455
BstMBI GATC 2 cut(s) 29, 322
BstMCI CGRYCG 2 cut(s) 62, 336
BstMWI GCNNNNNNNGC 2 cut(s) 11, 185
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 25
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 26, 151
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 2 cut(s) 78, 325
BtsI GCAGTG 2 cut(s) 231, 243
BtsIMutI CAGTG 3 cut(s) 39, 231, 243
CfoI GCGC 1 cut(s) 448
CseI GACGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 5, 164, 179, 206, 342, 487
CviKI_1 RGCY 6 cut(s) 5, 164, 179, 206, 342, 487
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 294, 374
DpnI GATC 2 cut(s) 31, 324
DpnII GATC 2 cut(s) 29, 322
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 108, 173, 390
FatI CATG 1 cut(s) 106
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 3 cut(s) 15, 165, 222
FokI GGATG 2 cut(s) 65, 332
Fsp4HI GCNGC 3 cut(s) 15, 165, 222
GlaI GCGC 1 cut(s) 447
GluI GCNGC 3 cut(s) 15, 165, 222
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 207, 311
HgaI GACGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 448
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 238, 302
HpaII CCGG 2 cut(s) 207, 311
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 9, 326, 376
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 2 cut(s) 278, 341
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 27, 68, 188, 248, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 185
HpyF3I CTNAG 2 cut(s) 294, 374
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 446
KpnI GGTACC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 29, 322
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 8 cut(s) 56, 108, 220, 245, 324, 361, 380, 407
Lsp1109I GCAGC 2 cut(s) 26, 151
LweI GCATC 1 cut(s) 319
MalI GATC 2 cut(s) 31, 324
MboI GATC 2 cut(s) 29, 322
MboII GAAGA 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 5 cut(s) 82, 291, 307, 383, 433
MseI TTAA 2 cut(s) 230, 502
MspI CCGG 2 cut(s) 207, 311
MspR9I CCNGG 1 cut(s) 395
Mva1269I GAATGC 2 cut(s) 190, 265
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 11, 185
NdeII GATC 2 cut(s) 29, 322
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 309, 486
NmeAIII GCCGAG 1 cut(s) 205
NspI RCATGY 1 cut(s) 110
PciI ACATGT 1 cut(s) 106
PctI GAATGC 2 cut(s) 190, 265
PfeI GAWTC 2 cut(s) 238, 302
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 16, 166, 223
PscI ACATGT 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 309, 486
PsrI GAACNNNNNNTAC 2 cut(s) 123, 155
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 2 cut(s) 230, 502
SatI GCNGC 3 cut(s) 15, 165, 222
Sau3AI GATC 2 cut(s) 29, 322
ScrFI CCNGG 1 cut(s) 395
SetI ASST 2 cut(s) 74, 318
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SsiI CCGC 8 cut(s) 58, 102, 221, 286, 332, 415, 427, 458
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 412
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 238, 302
Tru1I TTAA 2 cut(s) 230, 502
Tru9I TTAA 2 cut(s) 230, 502
TscAI CASTG 3 cut(s) 39, 231, 250
TseI GCWGC 2 cut(s) 14, 164
TspDTI ATGAA 2 cut(s) 188, 346
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 3 cut(s) 39, 231, 250
XceI RCATGY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.