Rh4CG305100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016588
Physical Location & Seq
Reverse (-)
56660667 .. 56662323
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG305100.1

Sequence Viewer

Length: 417 bp
ATGAAACCAGCAACTGCACATGTTTCTTCTCTATCAGATAAAGAACAAAAAATACTTGACAAAGTGGAAAAAAGGGCTGCTCTTATGAAGGCCGAGAATGCACCCATTTGGATTGTAGCCGGAATGGTCGGGGCGGCAGTGTTAATAGCGATTCACACTGCAAAACAACAACTGGTGCATTCCCCCGTCGTCAACTTCCGCAAGACTAAGAGGGAATCGGTACCGGAGGTGGATGATCCCGATGCTGTCGTCGGCTCTGCTGACAAGTTCATCAGCAAGTCTTTCCTCAGGAAAGTCGCTCATATCCAGGACAACACCAACACCGTCCACGACCCCTCCCGCCCTAACCCTTTTACTGCGCCACGCAAGGCGGAGACGCTCAAGTCCGTTGGAGTGGAGCCAAGCAGTCGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.09

Weight (kDa)

9.69

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 4 cut(s) 134, 199, 340, 371
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 368
BisI GCNGC 2 cut(s) 78, 135
BlsI GCNGC 2 cut(s) 79, 136
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 222, 399
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 120, 224
BsmAI GTCTC 1 cut(s) 368
BsmBI CGTCTC 1 cut(s) 368
BsmI GAATGC 2 cut(s) 103, 178
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 4 cut(s) 134, 199, 340, 371
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 222, 399
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 177
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 207, 287
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 2 cut(s) 144, 156
BtsIMutI CAGTG 2 cut(s) 144, 156
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 361
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 20
CviJI RGCY 5 cut(s) 77, 92, 119, 255, 400
CviKI_1 RGCY 5 cut(s) 77, 92, 119, 255, 400
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 207, 287
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 86, 303
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 78, 135
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 78, 135
GlaI GCGC 1 cut(s) 360
GluI GCNGC 2 cut(s) 78, 135
HaeIII GGCC 1 cut(s) 92
HapII CCGG 2 cut(s) 120, 224
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 361
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 151, 215
HpaII CCGG 2 cut(s) 120, 224
Hpy166II GTNNAC 2 cut(s) 193, 328
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 239, 289
Hpy8I GTNNAC 2 cut(s) 193, 328
Hpy99I CGWCG 2 cut(s) 191, 254
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 4 cut(s) 17, 101, 161, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 207, 287
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 7 cut(s) 21, 133, 158, 237, 274, 293, 320
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 232
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 4 cut(s) 204, 220, 296, 346
MseI TTAA 2 cut(s) 143, 415
MspI CCGG 2 cut(s) 120, 224
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 2 cut(s) 103, 178
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 222, 399
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PctI GAATGC 2 cut(s) 103, 178
PfeI GAWTC 2 cut(s) 151, 215
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 79, 136
PscI ACATGT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 222, 399
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 143, 415
SatI GCNGC 2 cut(s) 78, 135
Sau3AI GATC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 308
SetI ASST 1 cut(s) 231
SfaNI GCATC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 4 cut(s) 134, 199, 340, 371
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 325
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 151, 215
Tru1I TTAA 2 cut(s) 143, 415
Tru9I TTAA 2 cut(s) 143, 415
TscAI CASTG 2 cut(s) 144, 163
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 17, 101, 259
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 2 cut(s) 144, 163
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.