FvH4_4g22290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016588
Physical Location & Seq
Reverse (-)
25187608 .. 25189073
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22290.t1

Sequence Viewer

Length: 504 bp
ATGGCTTCAAGATTAGCGAACTACTGCAGATCAGTGGTGACCCAGTTGGGAGAAAAGCGGTCGTTTGCAACCTCATCCATTCCCAAGATGAAACCAGCAACCGTACCTATTTCTTCTCTATCAGACACAGAAAAAAAGTTACTTGACAAAGTGGAAAGAAGGGCTGTCCTTATGAGGGGTGAGTTGGCACCCATTTGGATATTAGCCGGAATGCTCATGGCGGCAGTGGGAATGGCGGGTCACAGTGCAAAACAACAACTGGTGCATGCCCCCGCCGTCAACGTACGTAAGAGTAAGAGGGAATCGGTACCGGAGGTGGAAGATCCCGATGCTGTCGTCGGCTCTGCTGATAAGTTCATCAACAAGTCTTTCCTCAGGAAAGTCGCTCATAGCCAGGACGCTAGCAAAGCAGTCCACGACCCCTCCCGCCCTAACCCTTTTACTGCGCCACGCAAGGCGGAGACGCTCAAGTCCGTTGGGGTGGAGCCACGCAGTCGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.17

Weight (kDa)

10.21

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63060
fragaria_vesca FvH4_4g22290
malus_domestica MD16G1143400.v1.1
prunus_persica Prupe.1G212400_v2.0.a1
pyrus_communis pycom16g11330
rosa_chinensis RchiOBHm_Chr4g0428531
rosa_multiflora Rmu_co8298239.1_g000001
rosa_roxburghii Rroxscaffold_5G00370230
rosa_rugosa Rorug04G0226000
rosa_samantha Rh4AG283500 Rh4BG289200 Rh4CG305100 Rh4DG286200
rosa_wichuraiana Rw4G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 469
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 187, 307
AciI CCGC 6 cut(s) 58, 221, 236, 273, 427, 458
AclWI GGATC 1 cut(s) 317
AfaI GTAC 3 cut(s) 105, 285, 309
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 49, 191
AsuNHI GCTAGC 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 374
BanI GGYRCC 2 cut(s) 187, 307
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 395
BmiI GGNNCC 3 cut(s) 189, 309, 486
BmrFI CCNGG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 43, 264
Bse21I CCTNAGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 43, 264
Bsh1285I CGRYCG 1 cut(s) 62
BshNI GGYRCC 2 cut(s) 187, 307
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 207, 311
BsiWI CGTACG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 29, 322
BspACI CCGC 6 cut(s) 58, 221, 236, 273, 427, 458
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 189, 309, 486
BspMAI CTGCAG 1 cut(s) 29
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 2 cut(s) 187, 307
BsrI ACTGG 2 cut(s) 43, 264
BssMI GATC 2 cut(s) 29, 322
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 103, 245
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 267, 403
BstDEI CTNAG 1 cut(s) 374
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 2 cut(s) 32, 325
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 29, 322
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 25
BstSNI TACGTA 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 39, 231, 250
Cac8I GCNNGC 2 cut(s) 267, 403
CfoI GCGC 1 cut(s) 448
CseI GACGC 2 cut(s) 407, 472
Csp6I GTAC 3 cut(s) 104, 284, 308
CviAII CATG 2 cut(s) 217, 266
CviJI RGCY 6 cut(s) 5, 164, 206, 342, 393, 487
CviKI_1 RGCY 6 cut(s) 5, 164, 206, 342, 393, 487
CviQI GTAC 3 cut(s) 104, 284, 308
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 31, 324
DpnII GATC 2 cut(s) 29, 322
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 473
Eco105I TACGTA 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 2 cut(s) 220, 269
FaiI YATR 4 cut(s) 173, 218, 267, 390
FatI CATG 2 cut(s) 216, 265
FauI CCCGC 3 cut(s) 229, 280, 434
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 222
HapII CCGG 2 cut(s) 207, 311
HgaI GACGC 2 cut(s) 407, 472
HhaI GCGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 220, 269
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 207, 311
HphI GGTGA 2 cut(s) 49, 191
Hpy166II GTNNAC 2 cut(s) 280, 415
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 9, 326, 376
Hpy8I GTNNAC 2 cut(s) 280, 415
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 103, 245
HpyCH4IV ACGT 2 cut(s) 282, 286
HpyCH4V TGCA 4 cut(s) 27, 68, 248, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 282, 286
Hsp92II CATG 2 cut(s) 220, 269
HspAI GCGC 1 cut(s) 446
KpnI GGTACC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 29, 322
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 8 cut(s) 56, 108, 220, 245, 324, 361, 380, 407
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 402
MaeII ACGT 2 cut(s) 282, 286
MaeIII GTNAC 3 cut(s) 37, 138, 239
MalI GATC 2 cut(s) 31, 324
MboI GATC 2 cut(s) 29, 322
MboII GAAGA 2 cut(s) 105, 332
MflI RGATCY 1 cut(s) 322
MnlI CCTC 6 cut(s) 82, 168, 291, 307, 383, 433
MspI CCGG 2 cut(s) 207, 311
MspR9I CCNGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 2 cut(s) 29, 322
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 2 cut(s) 220, 269
NlaIV GGNNCC 3 cut(s) 189, 309, 486
NmuCI GTSAC 2 cut(s) 37, 239
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 302
Pfl23II CGTACG 1 cut(s) 283
PkrI GCNGC 1 cut(s) 223
Ppu21I YACGTR 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 393
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 393
PspLI CGTACG 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 189, 309, 486
PstI CTGCAG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 3 cut(s) 105, 285, 309
RsaNI GTAC 3 cut(s) 104, 284, 308
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 29, 322
ScrFI CCNGG 1 cut(s) 395
SetI ASST 5 cut(s) 74, 109, 285, 289, 318
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SnaBI TACGTA 1 cut(s) 287
SphI GCATGC 1 cut(s) 269
SsiI CCGC 6 cut(s) 58, 221, 236, 273, 427, 458
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 103, 245
TaiI ACGT 2 cut(s) 285, 289
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 302
TscAI CASTG 3 cut(s) 39, 231, 250
TseFI GTSAC 2 cut(s) 37, 239
Tsp45I GTSAC 2 cut(s) 37, 239
TspDTI ATGAA 2 cut(s) 104, 346
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 3 cut(s) 39, 231, 250
XceI RCATGY 1 cut(s) 269
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.