AT1G63260

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007441
Physical Location & Seq
Reverse (-)
23466700 .. 23469289
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63260.4

Sequence Viewer

Length: 855 bp
ATGGGTATGGGCACAAGCACTTTCGTTATCAGATGGGTCAATCTTCTTACAATGCTATTGGCTGTGGCAGTGATAATATTTGGGGTGTGGATGAGTACACACAATGATGGTTGCAGAAGGTCACTTACATTTCCAGTTATAGCTCTTGGTGGTTTCATCTTCTTGATATCCATAATCGGATTTCTTGGCGCGTGCAAGAGAAGTGTGGCGCTTCTTTGGATTTATCTTGCCGTGCTCCTGATCGTTTTGATCGCGATTCTTGTCTTTACCGTACTGGCGTTCATTGTAACAAACAATGGTTCTGGCCATACTAACCCTGGTTTAAGGTACAAGGAGTATAAGCTGAATGATTACAGCTCATGGTTTCTAAAACAGCTTAACAACACCAGTAACTGGATAAGACTAAAGAGTTGTCTTGTTAAATCCGAGCAATGTCGGAAGCTTTCCAAGAAATACAAGACCATCAAACAGTTGAAATCCGCAGAATTAACCCCGATAGAAGCTGGATGTTGTCGACCACCATCTGAGTGTGGTTATCCTGCGGTGAATGCTTCTTACTATGACTTGAGCTTTCATTCGATAAGTTCTAACAAAGATTGTAAGCTTTACAAGAATTTGAGGACTATCAAGTGCTACAACTGTGATTCTTGCAAAGCTGGAGTTGCTCAGTACATGAAAACCGAGTGGCGACTTGTTGCGATCTTCAATGTGGTCCTGTTTGTTGTCTTGATAAGCTCTCTTCTTAGCACGAGATTTGACTCTGAACAAAGTTTTGGCCTTTTAAACGGTTTAGTGCAAATTTCCAACATAACCTTTAAAGATTGCCAAACCACAACAGTACCAAAACAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

284

Amino Acids

31.92

Weight (kDa)

9.47

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 172 6.4e-26 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 1 cut(s) 514
AccII CGCG 2 cut(s) 191, 254
AciI CCGC 2 cut(s) 480, 542
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 2 cut(s) 613, 798
AfaI GTAC 5 cut(s) 97, 273, 329, 671, 840
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 2 cut(s) 475, 706
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
Alw21I GWGCWC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 393
AoxI GGCC 2 cut(s) 304, 775
ApoI RAATTY 2 cut(s) 613, 798
AspLEI GCGC 2 cut(s) 191, 211
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 1 cut(s) 556
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 14
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BalI TGGCCA 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BauI CACGAG 1 cut(s) 748
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 4 cut(s) 27, 101, 470, 529
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 712
BmrFI CCNGG 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 586
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 4 cut(s) 134, 279, 387, 398
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 96, 512
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 516, 680
BseNI ACTGG 4 cut(s) 134, 279, 387, 398
BseSI GKGCMC 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 191, 254
BshFI GGCC 2 cut(s) 306, 777
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 393
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 306, 777
Bsp1286I GDGCHC 2 cut(s) 14, 237
Bsp143I GATC 3 cut(s) 240, 249, 699
Bsp68I TCGCGA 1 cut(s) 254
BspACI CCGC 2 cut(s) 480, 542
BspANI GGCC 2 cut(s) 306, 777
BspCNI CTCAG 2 cut(s) 517, 679
BspFNI CGCG 2 cut(s) 191, 254
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 4 cut(s) 134, 279, 387, 398
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 3 cut(s) 240, 249, 699
BssSI CACGAG 1 cut(s) 748
Bst2BI CACGAG 1 cut(s) 748
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 6 cut(s) 271, 471, 641, 788, 838, 849
Bst6I CTCTTC 1 cut(s) 744
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 3 cut(s) 525, 666, 743
BstF5I GGATG 2 cut(s) 96, 512
BstFNI CGCG 2 cut(s) 191, 254
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 191, 211
BstKTI GATC 3 cut(s) 243, 252, 702
BstMBI GATC 3 cut(s) 240, 249, 699
BstMWI GCNNNNNNNGC 2 cut(s) 548, 662
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 2 cut(s) 191, 254
BsuRI GGCC 2 cut(s) 306, 777
BtsCI GGATG 2 cut(s) 96, 512
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 393
CfoI GCGC 2 cut(s) 191, 211
Cfr13I GGNCC 1 cut(s) 712
Csp6I GTAC 5 cut(s) 96, 272, 328, 670, 839
CviAII CATG 2 cut(s) 360, 673
CviQI GTAC 5 cut(s) 96, 272, 328, 670, 839
DdeI CTNAG 3 cut(s) 525, 666, 743
DpnI GATC 3 cut(s) 242, 251, 701
DpnII GATC 3 cut(s) 240, 249, 699
DraI TTTAAA 2 cut(s) 783, 817
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 168
FaeI CATG 2 cut(s) 363, 676
FaiI YATR 9 cut(s) 8, 140, 173, 309, 339, 361, 561, 674, 809
FatI CATG 2 cut(s) 359, 672
FblI GTMKAC 1 cut(s) 514
FokI GGATG 2 cut(s) 103, 519
GlaI GCGC 2 cut(s) 190, 210
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 306, 777
HhaI GCGC 2 cut(s) 191, 211
Hin1II CATG 2 cut(s) 363, 676
Hin6I GCGC 2 cut(s) 189, 209
HinP1I GCGC 2 cut(s) 189, 209
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 2 cut(s) 440, 602
HinfI GANTC 3 cut(s) 256, 644, 758
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 98, 515
Hpy188I TCNGA 6 cut(s) 32, 179, 427, 438, 526, 763
Hpy188III TCNNGA 4 cut(s) 163, 238, 253, 727
Hpy8I GTNNAC 2 cut(s) 98, 515
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 6 cut(s) 271, 471, 641, 788, 838, 849
HpyCH4V TGCA 4 cut(s) 114, 195, 651, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 662
HpyF3I CTNAG 3 cut(s) 525, 666, 743
Hsp92II CATG 2 cut(s) 363, 676
HspAI GCGC 2 cut(s) 189, 209
Kzo9I GATC 3 cut(s) 240, 249, 699
LmnI GCTCC 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 120, 286, 389
MalI GATC 3 cut(s) 242, 251, 701
MboI GATC 3 cut(s) 240, 249, 699
MboII GAAGA 4 cut(s) 35, 151, 694, 731
MhlI GDGCHC 2 cut(s) 14, 237
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 3 cut(s) 485, 613, 798
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 1 cut(s) 752
MmeI TCCRAC 2 cut(s) 416, 828
MnlI CCTC 1 cut(s) 612
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 7 cut(s) 323, 378, 420, 488, 782, 816, 853
MslI CAYNNNNRTG 2 cut(s) 105, 526
Msp20I TGGCCA 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 2 cut(s) 191, 254
MwoI GCNNNNNNNGC 2 cut(s) 548, 662
NdeII GATC 3 cut(s) 240, 249, 699
NlaIII CATG 2 cut(s) 363, 676
NmuCI GTSAC 1 cut(s) 120
NruI TCGCGA 1 cut(s) 254
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 2 cut(s) 256, 644
PflMI CCANNNNNTGG 1 cut(s) 393
PleI GAGTC 1 cut(s) 752
PpsI GAGTC 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 712
PstNI CAGNNNCTG 1 cut(s) 393
RruI TCGCGA 1 cut(s) 254
RsaI GTAC 5 cut(s) 97, 273, 329, 671, 840
RsaNI GTAC 5 cut(s) 96, 272, 328, 670, 839
RseI CAYNNNNRTG 2 cut(s) 105, 526
SalI GTCGAC 1 cut(s) 513
SaqAI TTAA 7 cut(s) 323, 378, 420, 488, 782, 816, 853
Sau3AI GATC 3 cut(s) 240, 249, 699
Sau96I GGNCC 1 cut(s) 712
SchI GAGTC 1 cut(s) 752
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 2 cut(s) 14, 237
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 105, 526
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
Sse9I AATT 3 cut(s) 485, 613, 798
SsiI CCGC 2 cut(s) 480, 542
SspI AATATT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 6 cut(s) 271, 471, 641, 788, 838, 849
TaqI TCGA 2 cut(s) 514, 578
TasI AATT 3 cut(s) 485, 613, 798
TatI WGTACW 2 cut(s) 95, 669
TfiI GAWTC 2 cut(s) 256, 644
Tru1I TTAA 7 cut(s) 323, 378, 420, 488, 782, 816, 853
Tru9I TTAA 7 cut(s) 323, 378, 420, 488, 782, 816, 853
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 4 cut(s) 145, 271, 563, 689
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 2 cut(s) 613, 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.