Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007441

Physical Location & Seq

Genomic Coordinates Reverse (-)

10497800 .. 10502685

Gene Structure 4886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G095600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGTATGGGAACAAGCACATTTGTCATCAGATGGATCAACTTTCTCACCATGCTGTTAGCAATTGCCGTTGTAGTTTTTGGGGTATGGATGAGCACTCATCATGATAACTGTCGGAGATCCCTCACTATCCCTGTTATAGGCATTGGCGCCGTCATCTTTTTAGTCTCTATAATCGGCTTCTTGGGTGCGCTGAAAAATAGCTCCATACTGTTGTGGATTTATCTGATTCTCTTGTGCTTCATATCGGTGGGAGTTTTGGTGTTCACAGTATTAGCGTTCATTGTCACAAATAATGGTTCTGGTCATAGCGTAGCTGGCTTGAGGTACAAGGAGTATCAACTCCATGATTACAGTCCATGGTTTGTAAAACAATTGAACAATACCCGTAACTGGAAGCACTTACAGAGTTGTCTTGTGAAATCTGATGACTGCAAAAACCTATCCAAAAAGTATAAGACTCTCAAGCAATACAAATTGGCAAAGCTAACCCCTATCGAGGCTGGTTGTTGTCGACCACCATCTGAATGCGGTTATCCTGCTGTTAATGCTTCATACTATGACATGAGCTTCCACCCAGTTAGTTCGAACAAGGACTGCAAACTTTACAAAAATGCCCGAGACATTAAGTGCTACAATTGCGATTCATGCAAGGCTGGAGTTGCACAATACATGAAAACTGAGTGGAGAGTGGTTGCGATCTTTAACGTGGCTCTATTTGTTGTTCTGTCTATGATATATTTTGTGGGATGCTGCGCGAGACGAAATGCTGCAAGAATCCGTTCTAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

265

Amino Acids

29.79

Weight (kDa)

9.47

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63260 AT1G63260 AT1G63260 AT1G63260 AT1G63260 AT1G63260
fragaria_vesca	FvH4_5g01944 FvH4_5g01944 FvH4_5g01944
malus_domestica	MD06G1077800.v1.1
prunus_persica	Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1
pyrus_communis	pycom06g07560
rosa_chinensis	RchiOBHm_Chr7g0198441
rosa_laevigata	RLG00000003867
rosa_multiflora	Rmu_sc0001250.1_g000002
rosa_rugosa	Rorug07G0048000 Rorug07G0048100.1 Rorug07G0048200
rosa_samantha	Rh7BG174600 Rh7DG173700
rosa_wichuraiana	Rw7G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	514
AccII	CGCG	1 cut(s)	758
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	2 cut(s)	44, 114
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	140, 393, 499
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	4 cut(s)	204, 317, 487, 570
AluI	AGCT	4 cut(s)	204, 317, 487, 570
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	3 cut(s)	172, 615, 754
AlwI	GGATC	2 cut(s)	44, 114
Ama87I	CYCGRG	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	753, 770
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	3 cut(s)	152, 193, 758
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	740, 757
BccI	CCATC	2 cut(s)	27, 529
BceAI	ACGGC	2 cut(s)	53, 137
BcoDI	GTCTC	3 cut(s)	172, 615, 754
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	2 cut(s)	754, 771
BlsI	GCNGC	2 cut(s)	755, 772
BmeT110I	CYCGRG	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	740
BmuI	ACTGGG	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	2 cut(s)	343, 449
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 393, 499
Bse1I	ACTGG	2 cut(s)	398, 578
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	2 cut(s)	96, 755
BseLI	CCNNNNNNNGG	3 cut(s)	140, 393, 499
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	2 cut(s)	398, 578
BseXI	GCAGC	2 cut(s)	740, 757
Bsh1236I	CGCG	1 cut(s)	758
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	618
BslI	CCNNNNNNNGG	3 cut(s)	140, 393, 499
BsmAI	GTCTC	3 cut(s)	172, 615, 754
BsmBI	CGTCTC	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	36, 119, 699
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	1 cut(s)	531
BspCNI	CTCAG	1 cut(s)	673
BspFNI	CGCG	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	2 cut(s)	44, 114
BspT104I	TTCGAA	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	398, 578
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	3 cut(s)	36, 119, 699
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	359
Bst4CI	ACNGT	4 cut(s)	113, 213, 271, 356
BstACI	GRCGYC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	681
BstDSI	CCRYGG	1 cut(s)	359
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	96, 755
BstFNI	CGCG	1 cut(s)	758
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	3 cut(s)	152, 193, 758
BstKTI	GATC	3 cut(s)	39, 122, 702
BstMAI	GTCTC	3 cut(s)	172, 615, 754
BstMBI	GATC	3 cut(s)	36, 119, 699
BstMWI	GCNNNNNNNGC	5 cut(s)	318, 548, 639, 648, 662
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	2 cut(s)	740, 757
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	96, 755
Cac8I	GCNNGC	1 cut(s)	319
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	3 cut(s)	152, 193, 758
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	7 cut(s)	52, 104, 347, 360, 565, 648, 673
CviJI	RGCY	9 cut(s)	180, 204, 317, 321, 487, 503, 570, 656, 713
CviKI_1	RGCY	9 cut(s)	180, 204, 317, 321, 487, 503, 570, 656, 713
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	681
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	3 cut(s)	38, 121, 701
DpnII	GATC	3 cut(s)	36, 119, 699
Eco130I	CCWWGG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	359
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	359
Esp3I	CGTCTC	1 cut(s)	754
FaeI	CATG	7 cut(s)	55, 107, 350, 363, 568, 651, 676
FatI	CATG	7 cut(s)	51, 103, 346, 359, 564, 647, 672
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	754, 771
FokI	GGATG	2 cut(s)	103, 762
Fsp4HI	GCNGC	2 cut(s)	754, 771
GlaI	GCGC	3 cut(s)	151, 192, 757
GluI	GCNGC	2 cut(s)	754, 771
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	153
HhaI	GCGC	3 cut(s)	152, 193, 758
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	7 cut(s)	55, 107, 350, 363, 568, 651, 676
Hin6I	GCGC	3 cut(s)	150, 191, 756
HinP1I	GCGC	3 cut(s)	150, 191, 756
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HinfI	GANTC	4 cut(s)	229, 460, 644, 777
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	267, 515
Hpy188I	TCNGA	5 cut(s)	32, 117, 228, 427, 526
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	267, 515
HpyCH4III	ACNGT	4 cut(s)	113, 213, 271, 356
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	5 cut(s)	435, 600, 651, 665, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	318, 548, 639, 648, 662
HpyF3I	CTNAG	1 cut(s)	681
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	7 cut(s)	55, 107, 350, 363, 568, 651, 676
HspAI	GCGC	3 cut(s)	150, 191, 756
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	36, 119, 699
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	147, 288, 303, 379, 489, 552, 591, 642
Lsp1109I	GCAGC	2 cut(s)	740, 757
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	286, 389
MalI	GATC	3 cut(s)	38, 121, 701
MboI	GATC	3 cut(s)	36, 119, 699
MfeI	CAATTG	3 cut(s)	63, 374, 637
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	4 cut(s)	63, 374, 476, 637
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	134, 318, 493
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	3 cut(s)	546, 627, 705
MslI	CAYNNNNRTG	2 cut(s)	248, 526
MunI	CAATTG	3 cut(s)	63, 374, 637
Mva1269I	GAATGC	1 cut(s)	533
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	5 cut(s)	318, 548, 639, 648, 662
NarI	GGCGCC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	3 cut(s)	36, 119, 699
NlaIII	CATG	7 cut(s)	55, 107, 350, 363, 568, 651, 676
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	587
PagI	TCATGA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	229, 644, 777
PkrI	GCNGC	2 cut(s)	755, 772
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	248, 526
SalI	GTCGAC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	546, 627, 705
SatI	GCNGC	2 cut(s)	754, 771
Sau3AI	GATC	3 cut(s)	36, 119, 699
SchI	GAGTC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	7 cut(s)	206, 319, 329, 444, 489, 572, 711
SfaNI	GCATC	1 cut(s)	740
SfoI	GGCGCC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	587
SmiMI	CAYNNNNRTG	2 cut(s)	248, 526
SmlI	CTYRAG	2 cut(s)	322, 464
SmoI	CTYRAG	2 cut(s)	322, 464
Sse9I	AATT	4 cut(s)	63, 374, 476, 637
SsiI	CCGC	1 cut(s)	531
SspDI	GGCGCC	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	4 cut(s)	113, 213, 271, 356
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	3 cut(s)	498, 514, 587
TasI	AATT	4 cut(s)	63, 374, 476, 637
TfiI	GAWTC	3 cut(s)	229, 644, 777
Tru1I	TTAA	3 cut(s)	546, 627, 705
Tru9I	TTAA	3 cut(s)	546, 627, 705
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	753, 770
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	5 cut(s)	232, 271, 543, 636, 689
TspGWI	ACGGA	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.