Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001250.1

Orthogroup ID

OG0007441

Physical Location & Seq

Genomic Coordinates Reverse (-)

11607 .. 16705

Gene Structure 5099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001250.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgggcatgggaacaagcacctttgttatcagatggatcaactttctcaccatgcttttagcaattgctgtggtagtcttcggagtatggatgagcactcatcatgatggctgtcggaaatccctcaccctccctgttttagccattggtgctgtcattttcttagtatctataattgggttcttgggcgcgctgaaaagaagttccatactgttatggatttatttgattctcctgtgcttcatattggtgggaatcctggtgttcacagtattagcgttcattgtcacaaataatggttctggtcatagcgtcgctgacctgaggttcaaggagtatcaacttcaggattacagttcatggtttctaaaacaattgaacaatacccataactggaagcacttaaagggttgtcttgtgaactcagatgattgcaataacctatcaaagaagtataagactctcaagaaattcaaattggcaaagctgacccctattgaagctggttgctgtcggccaccgtctgaatgcggttatcctgctgttaatgcctcatactatgacttgagctttcatccagttagttcaaacaaggactgcaaactttacagaaatgctcgggacaccaagtgctataattgtgattcctgcaaggctggagttgcacaatacatgaaaactgagtggagagtggttgcaattttcaatgttgctctatttgttgttttgtctctgatatactttgtgggctgttgtgcgagacgaaatgctgcaagagaccgtgatctcattaccgctagatttgcggattgtcactttgatgagacagtcttcccgtcgttagggagagataacaggaacgacatgaattatcgtggtctgtctccactatgtctcatctcgatccctgttaaagtgacgagatcacacatatctgctacaaatatgcctgcaaggaagaatgtccctacgagaggacgtagcgctaccctacacggaagtaggcatggcgccaacgcaaaagaaagtggcactctggctttacaagccatggccccagctaggatgcgtgagaggctcgtggattcgaaggatactttggcacattccgatcatttgatcatcaagactcaaaatcagtctcataagaatgttccgggttatggttattgttgggagacgcctcaacatcagaacctattcctgagaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

404

Amino Acids

45.41

Weight (kDa)

9.53

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63260 AT1G63260 AT1G63260 AT1G63260 AT1G63260 AT1G63260
fragaria_vesca	FvH4_5g01944 FvH4_5g01944 FvH4_5g01944
malus_domestica	MD06G1077800.v1.1
prunus_persica	Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1 Prupe.5G095600_v2.0.a1
pyrus_communis	pycom06g07560
rosa_chinensis	RchiOBHm_Chr7g0198441
rosa_laevigata	RLG00000003867
rosa_multiflora	Rmu_sc0001250.1_g000002
rosa_rugosa	Rorug07G0048000 Rorug07G0048100.1 Rorug07G0048200
rosa_samantha	Rh7BG174600 Rh7DG173700
rosa_wichuraiana	Rw7G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1010
AccII	CGCG	1 cut(s)	191
AciI	CCGC	3 cut(s)	531, 795, 806
AclWI	GGATC	2 cut(s)	44, 898
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	2 cut(s)	1011, 1181
AdeI	CACNNNGTG	1 cut(s)	630
AfeI	AGCGCT	1 cut(s)	985
AfiI	CCNNNNNNNGG	5 cut(s)	393, 842, 974, 1062, 1163
AgsI	TTSAA	6 cut(s)	331, 379, 475, 500, 588, 706
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 493, 1082, 1114
AluBI	AGCT	4 cut(s)	487, 503, 570, 1061
AluI	AGCT	4 cut(s)	487, 503, 570, 1061
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	8 cut(s)	735, 754, 771, 818, 888, 899, 1146, 1172
AlwI	GGATC	2 cut(s)	44, 898
Ama87I	CYCGRG	1 cut(s)	618
Aor51HI	AGCGCT	1 cut(s)	985
AoxI	GGCC	2 cut(s)	515, 1053
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	1199
AspLEI	GCGC	4 cut(s)	191, 193, 986, 1013
AspS9I	GGNCC	1 cut(s)	1054
AsuC2I	CCSGG	1 cut(s)	1158
AsuHPI	GGTGA	2 cut(s)	40, 118
AsuII	TTCGAA	1 cut(s)	1088
AvaI	CYCGRG	1 cut(s)	618
AxyI	CCTNAGG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	1010
BauI	CACGAG	1 cut(s)	1079
BbsI	GAAGAC	2 cut(s)	70, 823
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	2 cut(s)	27, 101
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	1119
BcnI	CCSGG	1 cut(s)	1158
BcoDI	GTCTC	8 cut(s)	735, 754, 771, 818, 888, 899, 1146, 1172
BfaI	CTAG	2 cut(s)	798, 1062
BfoI	RGCGCY	2 cut(s)	987, 1014
BfuI	GTATCC	1 cut(s)	1087
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	2 cut(s)	260, 1158
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	1054
BmiI	GGNNCC	2 cut(s)	1012, 1056
BmrFI	CCNGG	2 cut(s)	260, 1158
BmsI	GCATC	1 cut(s)	1056
BpiI	GAAGAC	2 cut(s)	70, 823
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	1088
BpuEI	CTTGAG	2 cut(s)	449, 586
BpuMI	CCSGG	1 cut(s)	1158
BsaHI	GRCGYC	2 cut(s)	1011, 1181
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	1050
Bsc4I	CCNNNNNNNGG	5 cut(s)	393, 842, 974, 1062, 1163
Bse1I	ACTGG	2 cut(s)	398, 578
Bse21I	CCTNAGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	1050
BseGI	GGATG	3 cut(s)	96, 574, 1071
BseLI	CCNNNNNNNGG	5 cut(s)	393, 842, 974, 1062, 1163
BseMII	CTCAG	4 cut(s)	314, 438, 672, 1196
BseNI	ACTGG	2 cut(s)	398, 578
BsePI	GCGCGC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	1057
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	517, 1055
BshNI	GGYRCC	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	1157
BslFI	GGGAC	2 cut(s)	635, 950
BslI	CCNNNNNNNGG	5 cut(s)	393, 842, 974, 1062, 1163
BsmAI	GTCTC	8 cut(s)	735, 754, 771, 818, 888, 899, 1146, 1172
BsmBI	CGTCTC	2 cut(s)	754, 1172
BsmFI	GGGAC	2 cut(s)	635, 950
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	517, 1055
Bso31I	GGTCTC	1 cut(s)	771
BsoBI	CYCGRG	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
Bsp19I	CCATGG	1 cut(s)	1050
BspACI	CCGC	3 cut(s)	531, 795, 806
BspANI	GGCC	2 cut(s)	517, 1055
BspCNI	CTCAG	4 cut(s)	315, 437, 673, 1197
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	1012, 1056
BspPI	GGATC	2 cut(s)	44, 898
BspT104I	TTCGAA	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	398, 578
BssECI	CCNNGG	1 cut(s)	1050
BssHII	GCGCGC	1 cut(s)	189
BssMI	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
BssNI	GRCGYC	2 cut(s)	1011, 1181
BssSI	CACGAG	1 cut(s)	1079
BssT1I	CCWWGG	1 cut(s)	1050
Bst2BI	CACGAG	1 cut(s)	1079
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	6 cut(s)	213, 271, 356, 522, 782, 829
BstACI	GRCGYC	2 cut(s)	1011, 1181
BstBI	TTCGAA	1 cut(s)	1088
BstC8I	GCNNGC	2 cut(s)	191, 951
BstDEI	CTNAG	5 cut(s)	163, 323, 424, 681, 1205
BstDSI	CCRYGG	1 cut(s)	1050
BstENI	CCTNNNNNAGG	1 cut(s)	972
BstF5I	GGATG	3 cut(s)	96, 574, 1071
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	2 cut(s)	987, 1014
BstHHI	GCGC	4 cut(s)	191, 193, 986, 1013
BstKTI	GATC	6 cut(s)	39, 787, 906, 926, 1114, 1122
BstMAI	GTCTC	8 cut(s)	735, 754, 771, 818, 888, 899, 1146, 1172
BstMBI	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 548, 662, 803, 1046, 1075
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	258, 1156
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	70, 823
Bsu36I	CCTNAGG	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	2 cut(s)	517, 1055
BtgI	CCRYGG	1 cut(s)	1050
BtsCI	GGATG	3 cut(s)	96, 574, 1071
Cac8I	GCNNGC	2 cut(s)	191, 951
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	4 cut(s)	191, 193, 986, 1013
Cfr13I	GGNCC	1 cut(s)	1054
CseI	GACGC	2 cut(s)	301, 1189
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	8 cut(s)	7, 52, 104, 360, 673, 865, 1007, 1051
DdeI	CTNAG	5 cut(s)	163, 323, 424, 681, 1205
DinI	GGCGCC	1 cut(s)	1012
DpnI	GATC	6 cut(s)	38, 786, 905, 925, 1113, 1121
DpnII	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
DraIII	CACNNNGTG	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	1050
Eco31I	GGTCTC	1 cut(s)	771
Eco47III	AGCGCT	1 cut(s)	985
Eco57I	CTGAAG	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	1050
EgeI	GGCGCC	1 cut(s)	1012
EheI	GGCGCC	1 cut(s)	1012
ErhI	CCWWGG	1 cut(s)	1050
Esp3I	CGTCTC	2 cut(s)	754, 1172
FaeI	CATG	8 cut(s)	10, 55, 107, 363, 676, 868, 1010, 1054
FaqI	GGGAC	2 cut(s)	635, 950
FatI	CATG	8 cut(s)	6, 51, 103, 359, 672, 864, 1006, 1050
FbaI	TGATCA	1 cut(s)	1119
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	3 cut(s)	103, 561, 1078
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	2 cut(s)	798, 1062
GlaI	GCGC	4 cut(s)	190, 192, 985, 1012
GluI	GCNGC	1 cut(s)	771
GsaI	CCCAGC	1 cut(s)	1061
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	2 cut(s)	987, 1014
HaeIII	GGCC	2 cut(s)	517, 1055
HapII	CCGG	1 cut(s)	1157
HgaI	GACGC	2 cut(s)	301, 1189
HhaI	GCGC	4 cut(s)	191, 193, 986, 1013
Hin1I	GRCGYC	2 cut(s)	1011, 1181
Hin1II	CATG	8 cut(s)	10, 55, 107, 363, 676, 868, 1010, 1054
Hin6I	GCGC	4 cut(s)	189, 191, 984, 1011
HinP1I	GCGC	4 cut(s)	189, 191, 984, 1011
HinfI	GANTC	6 cut(s)	229, 255, 460, 644, 1085, 1129
HpaII	CCGG	1 cut(s)	1157
HphI	GGTGA	2 cut(s)	40, 118
Hpy166II	GTNNAC	2 cut(s)	267, 421
Hpy188I	TCNGA	8 cut(s)	32, 83, 117, 427, 526, 735, 1111, 1194
Hpy188III	TCNNGA	7 cut(s)	104, 347, 466, 620, 901, 1126, 1204
Hpy8I	GTNNAC	2 cut(s)	267, 421
Hpy99I	CGWCG	2 cut(s)	317, 841
HpyAV	CCTTC	1 cut(s)	1084
HpyCH4III	ACNGT	6 cut(s)	213, 271, 356, 522, 782, 829
HpyCH4IV	ACGT	1 cut(s)	979
HpyCH4V	TGCA	7 cut(s)	435, 600, 651, 665, 698, 773, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 548, 662, 803, 1046, 1075
HpyF3I	CTNAG	5 cut(s)	163, 323, 424, 681, 1205
HpySE526I	ACGT	1 cut(s)	979
Hsp92I	GRCGYC	2 cut(s)	1011, 1181
Hsp92II	CATG	8 cut(s)	10, 55, 107, 363, 676, 868, 1010, 1054
HspAI	GCGC	4 cut(s)	189, 191, 984, 1011
KasI	GGCGCC	1 cut(s)	1010
Ksp22I	TGATCA	1 cut(s)	1119
Kzo9I	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	798, 1062
MaeII	ACGT	1 cut(s)	979
MaeIII	GTNAC	3 cut(s)	286, 812, 916
MalI	GATC	6 cut(s)	38, 786, 905, 925, 1113, 1121
MboI	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
MboII	GAAGA	3 cut(s)	70, 823, 970
MfeI	CAATTG	2 cut(s)	63, 374
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	8 cut(s)	63, 174, 374, 470, 476, 637, 699, 868
Mly113I	GGCGCC	1 cut(s)	1011
MlyI	GAGTC	2 cut(s)	454, 1123
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	7 cut(s)	134, 140, 318, 562, 968, 1068, 1194
MroXI	GAANNNNTTC	1 cut(s)	1199
MseI	TTAA	3 cut(s)	404, 546, 912
MslI	CAYNNNNRTG	4 cut(s)	105, 248, 819, 1149
MspI	CCGG	1 cut(s)	1157
MspR9I	CCNGG	2 cut(s)	260, 1158
MunI	CAATTG	2 cut(s)	63, 374
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	6 cut(s)	149, 548, 662, 803, 1046, 1075
NarI	GGCGCC	1 cut(s)	1011
NciI	CCSGG	1 cut(s)	1158
NcoI	CCATGG	1 cut(s)	1050
NdeII	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
NlaIII	CATG	8 cut(s)	10, 55, 107, 363, 676, 868, 1010, 1054
NlaIV	GGNNCC	2 cut(s)	1012, 1056
NmuCI	GTSAC	3 cut(s)	286, 812, 916
NspV	TTCGAA	1 cut(s)	1088
PagI	TCATGA	1 cut(s)	103
PauI	GCGCGC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	1199
PfeI	GAWTC	4 cut(s)	229, 255, 644, 1085
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	2 cut(s)	454, 1123
PluTI	GGCGCC	1 cut(s)	1014
PpsI	GAGTC	2 cut(s)	454, 1123
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	1057
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	1012, 1056
PspPI	GGNCC	1 cut(s)	1054
PteI	GCGCGC	1 cut(s)	189
RseI	CAYNNNNRTG	4 cut(s)	105, 248, 819, 1149
SaqAI	TTAA	3 cut(s)	404, 546, 912
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	6 cut(s)	36, 784, 903, 923, 1111, 1119
Sau96I	GGNCC	1 cut(s)	1054
SchI	GAGTC	2 cut(s)	454, 1123
ScrFI	CCNGG	2 cut(s)	260, 1158
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	1056
SfoI	GGCGCC	1 cut(s)	1012
SfuI	TTCGAA	1 cut(s)	1088
SmiMI	CAYNNNNRTG	4 cut(s)	105, 248, 819, 1149
SmlI	CTYRAG	2 cut(s)	464, 565
SmoI	CTYRAG	2 cut(s)	464, 565
Sse9I	AATT	8 cut(s)	63, 174, 374, 470, 476, 637, 699, 868
SsiI	CCGC	3 cut(s)	531, 795, 806
SspDI	GGCGCC	1 cut(s)	1010
SspMI	CTAG	2 cut(s)	798, 1062
StyD4I	CCNGG	2 cut(s)	258, 1156
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	6 cut(s)	213, 271, 356, 522, 782, 829
TaiI	ACGT	1 cut(s)	982
TaqI	TCGA	2 cut(s)	902, 1088
TasI	AATT	8 cut(s)	63, 174, 374, 470, 476, 637, 699, 868
TfiI	GAWTC	4 cut(s)	229, 255, 644, 1085
Tru1I	TTAA	3 cut(s)	404, 546, 912
Tru9I	TTAA	3 cut(s)	404, 546, 912
TseFI	GTSAC	3 cut(s)	286, 812, 916
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	3 cut(s)	286, 812, 916
TspDTI	ATGAA	6 cut(s)	232, 271, 348, 563, 689, 881
TspGWI	ACGGA	1 cut(s)	1011
XagI	CCTNNNNNAGG	1 cut(s)	972
XapI	RAATTY	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	1199
XspI	CTAG	2 cut(s)	798, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.