Rw7G015000

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007441
Physical Location & Seq
Forward (+)
14879314 .. 14882905
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015000.1

Sequence Viewer

Length: 795 bp
ATGGGCATGGGAACAAGCACCTTTGTTATCAGATGGATCAACTTTCTCACCATGCTTTTAGCAATTGCTGTGGTAGTCTTCGGAGTATGGATGAGCACTCATCATGATGGCTGTCGGAAATCCCTCACCCTCCCTGTTTTAGCCATTGGTGCTGTCATTTTCTTAGTATCTATAATTGGGTTCTTGGGCGCGCTGAAAAGAAGTTCCATACTGTTATGGATTTATTTGATTCTCCTGTGCTTCATATTGGTGGGAATCCTGGTGTTCACAGTATTAGCGTTCATTGTCACAAATAATGGTTCTGGTCATAGCGTCGCTGACCTGAGGTTCAAGGAGTATCAACTTCAGGATTACAGTTCATGGTTTCTAAAACAATTGAACAATACCCATAACTGGAAGCACTTAAAGGGTTGTCTTGTGAACTCAGATGATTGCAATAACCTATCAAAGAAGTATAAGACTCTCAAGAAATTCAAATTGGCAAAGCTGACCCCTATTGAAGCTGGTTGCTGTCGGCCACCGTCTGAATGCGGTTATCCTGCTGTTAATGCCTCATACTATGACTTGAGCTTTCATCCAGTTAGTTCAAACAAGGACTGCAAACTTTACAGAAATGCTCGTGACACCAAGTGCTATAATTGTGATTCCTGCAAGGCTGGAGTTGCACAATACATGAAAACTGAGTGGAGAGTGGTTGCAATTTTCAATGTTGCTCTATTTGTTGTTTTGTCTCTGATATACTTTGTGGGCTGTTGTGCGAGACGAAATGCTGCAAGAGACCGTTCTAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

264

Amino Acids

29.71

Weight (kDa)

9.44

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 253 3.3e-35 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 531
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 6 cut(s) 331, 379, 475, 500, 588, 706
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 487, 503, 570
AluI AGCT 3 cut(s) 487, 503, 570
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 735, 754, 771
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 2 cut(s) 191, 193
AsuHPI GGTGA 2 cut(s) 40, 118
AxyI CCTNAGG 1 cut(s) 323
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 27, 101
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 735, 754, 771
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 449, 586
BsaI GGTCTC 1 cut(s) 771
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 398, 578
Bse21I CCTNAGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 96, 574
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 314, 438, 672
BseNI ACTGG 2 cut(s) 398, 578
BsePI GCGCGC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 3 cut(s) 735, 754, 771
BsmBI CGTCTC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 1 cut(s) 517
Bso31I GGTCTC 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 531
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 3 cut(s) 315, 437, 673
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 103
BspPI GGATC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 771
BsrI ACTGG 2 cut(s) 398, 578
BssHII GCGCGC 1 cut(s) 189
BssMI GATC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 5 cut(s) 213, 271, 356, 522, 782
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 4 cut(s) 163, 323, 424, 681
BstF5I GGATG 2 cut(s) 96, 574
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 191, 193
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 3 cut(s) 735, 754, 771
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 149, 548, 662
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 96, 574
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 191, 193
CseI GACGC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 5 cut(s) 7, 52, 104, 360, 673
CviJI RGCY 8 cut(s) 111, 143, 487, 503, 517, 570, 656, 750
CviKI_1 RGCY 8 cut(s) 111, 143, 487, 503, 517, 570, 656, 750
DdeI CTNAG 4 cut(s) 163, 323, 424, 681
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 771
Eco57I CTGAAG 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 5 cut(s) 10, 55, 107, 363, 676
FatI CATG 5 cut(s) 6, 51, 103, 359, 672
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 2 cut(s) 103, 561
Fsp4HI GCNGC 1 cut(s) 771
GlaI GCGC 2 cut(s) 190, 192
GluI GCNGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 517
HgaI GACGC 1 cut(s) 301
HhaI GCGC 2 cut(s) 191, 193
Hin1II CATG 5 cut(s) 10, 55, 107, 363, 676
Hin6I GCGC 2 cut(s) 189, 191
HinP1I GCGC 2 cut(s) 189, 191
HinfI GANTC 4 cut(s) 229, 255, 460, 644
HphI GGTGA 2 cut(s) 40, 118
Hpy166II GTNNAC 2 cut(s) 267, 421
Hpy188I TCNGA 6 cut(s) 32, 83, 117, 427, 526, 735
Hpy188III TCNNGA 4 cut(s) 104, 347, 466, 620
Hpy8I GTNNAC 2 cut(s) 267, 421
Hpy99I CGWCG 1 cut(s) 317
HpyCH4III ACNGT 5 cut(s) 213, 271, 356, 522, 782
HpyCH4V TGCA 6 cut(s) 435, 600, 651, 665, 698, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 548, 662
HpyF3I CTNAG 4 cut(s) 163, 323, 424, 681
Hsp92II CATG 5 cut(s) 10, 55, 107, 363, 676
HspAI GCGC 2 cut(s) 189, 191
Kzo9I GATC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 757
MaeIII GTNAC 2 cut(s) 286, 620
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 70
MfeI CAATTG 2 cut(s) 63, 374
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 134, 140, 318, 562
MseI TTAA 3 cut(s) 404, 546, 793
MslI CAYNNNNRTG 2 cut(s) 105, 248
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 2 cut(s) 63, 374
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 149, 548, 662
NdeII GATC 1 cut(s) 36
NlaIII CATG 5 cut(s) 10, 55, 107, 363, 676
NmuCI GTSAC 2 cut(s) 286, 620
PagI TCATGA 1 cut(s) 103
PauI GCGCGC 1 cut(s) 189
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 229, 255, 644
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PteI GCGCGC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 105, 248
SaqAI TTAA 3 cut(s) 404, 546, 793
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 98
SetI ASST 7 cut(s) 23, 324, 329, 444, 489, 505, 572
SmiMI CAYNNNNRTG 2 cut(s) 105, 248
SmlI CTYRAG 2 cut(s) 464, 565
SmoI CTYRAG 2 cut(s) 464, 565
Sse9I AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
SsiI CCGC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 5 cut(s) 213, 271, 356, 522, 782
TasI AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
TfiI GAWTC 3 cut(s) 229, 255, 644
Tru1I TTAA 3 cut(s) 404, 546, 793
Tru9I TTAA 3 cut(s) 404, 546, 793
TseFI GTSAC 2 cut(s) 286, 620
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 286, 620
TspDTI ATGAA 5 cut(s) 232, 271, 348, 563, 689
XapI RAATTY 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.