Rorug07G0048000

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007441
Physical Location & Seq
Reverse (-)
3466400 .. 3468495
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0048000.1

Sequence Viewer

Length: 906 bp
ATGGCCACATTCTCACGTCCTATGGCTTCTTCAAATGCGAGACGTGCCCTAATTCCAGAGGACTCTCCAAGCTTCTGCATTAAGATTGTCACTGATAATGACCTCCGAGATGGGAAGGAACTTCCTGAGATGGCTGTAAAGATATATCGAAACTGTATGGAAGACTCTATATTCCTCAAGGTACCAAATTGTGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCATGGTGGCCGAATGTGGTTGCACAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGAGCAAGGATACTTGGTATTTGTGAGTTATAAAGGCGAGCATTCTCATTTCCAAGGGCGCATTTTCCATTGGAATGATGTGGAAATCGAGTACCCTATTCGCGGATCAGGAGGAACTGATGGCATACCAAAAAGGAAAAGAACAAGAGCTCATGGAGGCATGCCTAATGCTTATTTAAAAGTAGCTAGAGCCATTTCAAATTCCTCCAGATCCTTGGGTAATGAACACCAGAATGTTCTTTCCACAGCTAACAGTTTCAAATCTGACAAGCCATTTATTATGATAAAAATGACAGCTTATTACTTGCGTAGAGAAATGTTTATAAGTGCATCTTTTGCCACAAAACATCTCTGTCGAGCAGGCGCTTCTTGTGACTTGTCCCTACAGACTCCAGATATGAGAACTTGGATTGCTGAATTGATTGTGTATGAAACCACTGAGCTAAGAGTATATGCAAAGATTAAAGGTGCTTGTTGGAAGGCATTTAAGGAGGAAAATCATCTCGAAGAAGGTGATGTCTGTGTGCTTGAGTTGATAGAGGAATGTAAATTCAGAGTTTCGATATTCCGAGCAAGAGTGAAGATTAACGAGTTAAGTGAAGCTGGAAGGCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

301

Amino Acids

34.5

Weight (kDa)

9.02

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 191 - 287 1.1e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 611
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 390
AclWI GGATC 2 cut(s) 400, 492
AcoI YGGCCR 3 cut(s) 3, 203, 235
AcsI RAATTY 2 cut(s) 487, 836
AfaI GTAC 2 cut(s) 183, 380
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 33, 212, 486, 547
AjiI CACGTC 2 cut(s) 17, 44
AluBI AGCT 8 cut(s) 72, 227, 437, 473, 536, 584, 730, 890
AluI AGCT 8 cut(s) 72, 227, 437, 473, 536, 584, 730, 890
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 34, 188
AlwI GGATC 2 cut(s) 400, 492
AoxI GGCC 4 cut(s) 3, 203, 235, 896
ApoI RAATTY 2 cut(s) 487, 836
Asp718I GGTACC 1 cut(s) 181
AspLEI GCGC 2 cut(s) 348, 653
AsuHPI GGTGA 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 49
BalI TGGCCA 2 cut(s) 5, 205
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 439
BccI CCATC 4 cut(s) 104, 124, 252, 401
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 34, 188
BfaI CTAG 2 cut(s) 287, 474
BfmI CTRYAG 1 cut(s) 671
BfoI RGCGCY 1 cut(s) 654
BfuI GTATCC 1 cut(s) 290
BmgBI CACGTC 2 cut(s) 17, 44
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 2 cut(s) 478, 663
BpuEI CTTGAG 2 cut(s) 161, 836
BsaJI CCNNGG 2 cut(s) 340, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 340, 501
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 117, 717
BseSI GKGCMC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 4 cut(s) 5, 205, 237, 898
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 439
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 34, 188
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 4 cut(s) 5, 205, 237, 898
Bsp1286I GDGCHC 2 cut(s) 49, 439
Bsp143I GATC 2 cut(s) 392, 497
BspACI CCGC 1 cut(s) 390
BspANI GGCC 4 cut(s) 5, 205, 237, 898
BspCNI CTCAG 2 cut(s) 118, 718
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 400, 492
BspT107I GGYRCC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 340, 501
BssMI GATC 2 cut(s) 392, 497
BssT1I CCWWGG 2 cut(s) 340, 501
Bst4CI ACNGT 2 cut(s) 155, 542
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 326, 449, 649
BstDEI CTNAG 3 cut(s) 126, 726, 731
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 2 cut(s) 348, 653
BstKTI GATC 2 cut(s) 395, 500
BstMAI GTCTC 2 cut(s) 34, 188
BstMBI GATC 2 cut(s) 392, 497
BstMWI GCNNNNNNNGC 2 cut(s) 44, 623
BstNSI RCATGY 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 671
BstSLI GKGCMC 1 cut(s) 49
BstUI CGCG 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 497
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 497
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 4 cut(s) 5, 205, 237, 898
BtrI CACGTC 2 cut(s) 17, 44
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 90, 723
Cac8I GCNNGC 3 cut(s) 326, 449, 649
CfoI GCGC 2 cut(s) 348, 653
Csp6I GTAC 2 cut(s) 182, 379
CviAII CATG 3 cut(s) 230, 440, 448
CviQI GTAC 2 cut(s) 182, 379
DdeI CTNAG 3 cut(s) 126, 726, 731
DpnI GATC 2 cut(s) 394, 499
DpnII GATC 2 cut(s) 392, 497
DraI TTTAAA 1 cut(s) 465
EaeI YGGCCR 3 cut(s) 3, 203, 235
Ecl136II GAGCTC 1 cut(s) 437
Eco130I CCWWGG 2 cut(s) 340, 501
Eco24I GRGCYC 1 cut(s) 439
Eco53kI GAGCTC 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 437
EcoT14I CCWWGG 2 cut(s) 340, 501
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 340, 501
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 3 cut(s) 233, 443, 451
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 1 cut(s) 652
FatI CATG 3 cut(s) 229, 439, 447
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 439
FspBI CTAG 2 cut(s) 287, 474
GlaI GCGC 2 cut(s) 347, 652
GsuI CTGGAG 2 cut(s) 478, 663
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 4 cut(s) 5, 205, 237, 898
HhaI GCGC 2 cut(s) 348, 653
Hin1II CATG 3 cut(s) 233, 443, 451
Hin6I GCGC 2 cut(s) 346, 651
HinP1I GCGC 2 cut(s) 346, 651
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 3 cut(s) 62, 164, 676
HphI GGTGA 1 cut(s) 812
Hpy188I TCNGA 4 cut(s) 107, 553, 842, 857
Hpy188III TCNNGA 6 cut(s) 56, 125, 396, 495, 680, 791
HpyAV CCTTC 4 cut(s) 109, 760, 791, 888
HpyCH4III ACNGT 2 cut(s) 155, 542
HpyCH4IV ACGT 2 cut(s) 16, 43
HpyCH4V TGCA 4 cut(s) 78, 250, 617, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 623
HpyF3I CTNAG 3 cut(s) 126, 726, 731
HpySE526I ACGT 2 cut(s) 16, 43
Hsp92II CATG 3 cut(s) 233, 443, 451
HspAI GCGC 2 cut(s) 346, 651
KpnI GGTACC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 392, 497
LpnPI CCDG 8 cut(s) 69, 138, 381, 508, 530, 633, 693, 876
LweI GCATC 1 cut(s) 626
MaeI CTAG 2 cut(s) 287, 474
MaeII ACGT 2 cut(s) 16, 43
MaeIII GTNAC 2 cut(s) 88, 659
MalI GATC 2 cut(s) 394, 499
MboI GATC 2 cut(s) 392, 497
MboII GAAGA 4 cut(s) 21, 173, 806, 880
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 49, 439
MlsI TGGCCA 2 cut(s) 5, 205
MluCI AATT 6 cut(s) 51, 187, 207, 487, 704, 836
MluNI TGGCCA 2 cut(s) 5, 205
MlyI GAGTC 3 cut(s) 56, 158, 670
MmeI TCCRAC 1 cut(s) 743
MnlI CCTC 8 cut(s) 52, 113, 185, 392, 437, 502, 772, 820
Mox20I TGGCCA 2 cut(s) 5, 205
MscI TGGCCA 2 cut(s) 5, 205
MseI TTAA 6 cut(s) 81, 464, 750, 774, 873, 881
MslI CAYNNNNRTG 2 cut(s) 360, 519
Msp20I TGGCCA 2 cut(s) 5, 205
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 328
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 44, 623
NdeII GATC 2 cut(s) 392, 497
NlaIII CATG 3 cut(s) 233, 443, 451
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 2 cut(s) 88, 659
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PctI GAATGC 1 cut(s) 328
PleI GAGTC 3 cut(s) 56, 158, 670
PpsI GAGTC 3 cut(s) 56, 158, 670
PsiI TTATAA 2 cut(s) 318, 611
Psp124BI GAGCTC 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 2 cut(s) 183, 380
RsaNI GTAC 2 cut(s) 182, 379
RseI CAYNNNNRTG 2 cut(s) 360, 519
SacI GAGCTC 1 cut(s) 439
SaqAI TTAA 6 cut(s) 81, 464, 750, 774, 873, 881
Sau3AI GATC 2 cut(s) 392, 497
SchI GAGTC 3 cut(s) 56, 158, 670
SduI GDGCHC 2 cut(s) 49, 439
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 671
SmiMI CAYNNNNRTG 2 cut(s) 360, 519
SmlI CTYRAG 2 cut(s) 176, 815
SmoI CTYRAG 2 cut(s) 176, 815
SphI GCATGC 1 cut(s) 451
Sse9I AATT 6 cut(s) 51, 187, 207, 487, 704, 836
SsiI CCGC 1 cut(s) 390
SspMI CTAG 2 cut(s) 287, 474
SstI GAGCTC 1 cut(s) 439
StyI CCWWGG 2 cut(s) 340, 501
TaaI ACNGT 2 cut(s) 155, 542
TaiI ACGT 2 cut(s) 19, 46
TaqI TCGA 5 cut(s) 148, 375, 643, 792, 848
TasI AATT 6 cut(s) 51, 187, 207, 487, 704, 836
Tru1I TTAA 6 cut(s) 81, 464, 750, 774, 873, 881
Tru9I TTAA 6 cut(s) 81, 464, 750, 774, 873, 881
TscAI CASTG 2 cut(s) 97, 730
TseFI GTSAC 2 cut(s) 88, 659
Tsp45I GTSAC 2 cut(s) 88, 659
TspDTI ATGAA 2 cut(s) 525, 732
TspRI CASTG 2 cut(s) 97, 730
XapI RAATTY 2 cut(s) 487, 836
XceI RCATGY 1 cut(s) 451
XspI CTAG 2 cut(s) 287, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.