MD06G1077800.v1.1

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007441
Physical Location & Seq
Reverse (-)
19263705 .. 19268187
4483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1077800.v1.1.491

Sequence Viewer

Length: 795 bp
ATGGGAATGGGAACAAGCACATTTATCATCAGATGGGTCAACTTTCTCACCATGCTCTTAGCAATTGTTGTCGTAGTTTTCGGGGTGTGGATGAGTACTCATCACGATGGCTGTCGGAGATCCCTCACGCTCCCCGTTATAGGCATTGGTGCAGTCATCTTTTTAATATCAATAATCGGCTTCTTGGGTGCAATGAAAAATAGCTCCATACTCTTGTGGATTTATCTGATTCTGTTGTGCTTCATATTGGTGGGAATCCTGGTGTTCACGGTATTAGCGTTCATTGTCACAAATAATGGCTCTGGTCATAGCGTGGTTGGCTTGAGGTACAAGGAGTATCAACTCCATGATTACAGTCCATGGTTTCTAAAACAATTGAACAATACGCAAAACTGGAAGCACTTAAAGAGTTGTCTTGTGAAATCTAATGACTGCAATGACCTACCAAAAAAGTATAAGACTCTGAAGCAATACAAATTGGCAAAGCTAACCCCTGTGGAGGCTGGTTGTTGTCGACCACCATCTGAATGCGGTTATCCTGCTGTTAATGCGTCATACTATGACATGAGCTTCCATCCAGTTAGTTCGAACAAGGACTGCAAACTTTACAAAAATGCCCGGGACACCAAGTGTTACAATTGTGATTCCTGCAAGGCTGGAGTTGCACAATACATGAAAACTGAGTGGAGACTGGTCGCGATCTTTAATGTTGCTCTGTTTGTTGTTTTGTCTATGATATATTTCGTGGGATGCTGTGCAAGACGAAATGCTGCAAGAGTCCGTTCCAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

265

Amino Acids

29.82

Weight (kDa)

9.47

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 253 5.6e-35 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 514
AccII CGCG 1 cut(s) 698
AciI CCGC 1 cut(s) 531
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 2 cut(s) 97, 329
AfiI CCNNNNNNNGG 2 cut(s) 140, 499
AgsI TTSAA 1 cut(s) 379
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 204, 487, 570
AluI AGCT 3 cut(s) 204, 487, 570
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 770
AsuC2I CCSGG 2 cut(s) 619, 620
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 618
BbvI GCAGC 1 cut(s) 757
BccI CCATC 4 cut(s) 27, 101, 529, 582
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 2 cut(s) 619, 620
BcoDI GTCTC 1 cut(s) 682
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 3 cut(s) 260, 619, 620
BmeT110I CYCGRG 1 cut(s) 618
BmrFI CCNGG 3 cut(s) 260, 619, 620
BmsI GCATC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 343
BpuMI CCSGG 2 cut(s) 619, 620
BsaJI CCNNGG 2 cut(s) 359, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 499
Bse1I ACTGG 3 cut(s) 398, 578, 696
Bse3DI GCAATG 2 cut(s) 198, 442
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 359, 618
BseGI GGATG 3 cut(s) 96, 574, 755
BseLI CCNNNNNNNGG 2 cut(s) 140, 499
BseMI GCAATG 2 cut(s) 198, 442
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 398, 578, 696
BseXI GCAGC 1 cut(s) 757
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 698
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 1 cut(s) 619
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 140, 499
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 618
Bsp119I TTCGAA 1 cut(s) 587
Bsp143I GATC 2 cut(s) 119, 699
Bsp19I CCATGG 1 cut(s) 359
Bsp68I TCGCGA 1 cut(s) 698
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 673
BspFNI CGCG 1 cut(s) 698
BspPI GGATC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 198, 442
BsrI ACTGG 3 cut(s) 398, 578, 696
BssECI CCNNGG 2 cut(s) 359, 618
BssMI GATC 2 cut(s) 119, 699
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 271, 356
BstBI TTCGAA 1 cut(s) 587
BstDEI CTNAG 2 cut(s) 58, 681
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 3 cut(s) 96, 574, 755
BstFNI CGCG 1 cut(s) 698
BstKTI GATC 2 cut(s) 122, 702
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 2 cut(s) 119, 699
BstMWI GCNNNNNNNGC 3 cut(s) 318, 548, 662
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 258, 617, 618
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 3 cut(s) 96, 574, 755
BtuMI TCGCGA 1 cut(s) 698
Cfr9I CCCGGG 1 cut(s) 618
CseI GACGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 96, 328
CviAII CATG 5 cut(s) 52, 347, 360, 565, 673
CviJI RGCY 9 cut(s) 111, 180, 204, 300, 321, 487, 503, 570, 656
CviKI_1 RGCY 9 cut(s) 111, 180, 204, 300, 321, 487, 503, 570, 656
CviQI GTAC 2 cut(s) 96, 328
DdeI CTNAG 2 cut(s) 58, 681
DpnI GATC 2 cut(s) 121, 701
DpnII GATC 2 cut(s) 119, 699
DraIII CACNNNGTG 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 5 cut(s) 55, 350, 363, 568, 676
FaqI GGGAC 1 cut(s) 635
FatI CATG 5 cut(s) 51, 346, 359, 564, 672
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 3 cut(s) 103, 561, 762
Fsp4HI GCNGC 1 cut(s) 771
GluI GCNGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 678
HapII CCGG 1 cut(s) 619
HgaI GACGC 1 cut(s) 540
Hin1II CATG 5 cut(s) 55, 350, 363, 568, 676
HincII GTYRAC 2 cut(s) 40, 515
HindII GTYRAC 2 cut(s) 40, 515
HinfI GANTC 5 cut(s) 229, 255, 460, 644, 777
HpaII CCGG 1 cut(s) 619
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 40, 267, 515
Hpy188I TCNGA 5 cut(s) 32, 117, 228, 465, 526
Hpy188III TCNNGA 2 cut(s) 104, 697
Hpy8I GTNNAC 3 cut(s) 40, 267, 515
HpyCH4III ACNGT 2 cut(s) 271, 356
HpyCH4V TGCA 8 cut(s) 152, 191, 435, 600, 651, 665, 758, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 548, 662
HpyF3I CTNAG 2 cut(s) 58, 681
Hsp92II CATG 5 cut(s) 55, 350, 363, 568, 676
Kzo9I GATC 2 cut(s) 119, 699
LmnI GCTCC 2 cut(s) 135, 209
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 740
MaeIII GTNAC 2 cut(s) 286, 632
MalI GATC 2 cut(s) 121, 701
MboI GATC 2 cut(s) 119, 699
MfeI CAATTG 3 cut(s) 63, 374, 637
MflI RGATCY 1 cut(s) 119
MluCI AATT 5 cut(s) 63, 374, 476, 637, 790
MlyI GAGTC 2 cut(s) 454, 786
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 134, 318, 493
MseI TTAA 5 cut(s) 164, 404, 546, 705, 793
MslI CAYNNNNRTG 3 cut(s) 105, 248, 526
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 3 cut(s) 260, 619, 620
MunI CAATTG 3 cut(s) 63, 374, 637
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 3 cut(s) 318, 548, 662
NciI CCSGG 2 cut(s) 619, 620
NcoI CCATGG 1 cut(s) 359
NdeII GATC 2 cut(s) 119, 699
NlaIII CATG 5 cut(s) 55, 350, 363, 568, 676
NmuCI GTSAC 1 cut(s) 286
NruI TCGCGA 1 cut(s) 698
NspV TTCGAA 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 229, 255, 644
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 2 cut(s) 454, 785
PpsI GAGTC 2 cut(s) 454, 785
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 119
RruI TCGCGA 1 cut(s) 698
RsaI GTAC 2 cut(s) 97, 329
RsaNI GTAC 2 cut(s) 96, 328
RseI CAYNNNNRTG 3 cut(s) 105, 248, 526
SalI GTCGAC 1 cut(s) 513
SaqAI TTAA 5 cut(s) 164, 404, 546, 705, 793
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 2 cut(s) 119, 699
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 2 cut(s) 454, 786
ScrFI CCNGG 3 cut(s) 260, 619, 620
SetI ASST 5 cut(s) 206, 329, 444, 489, 572
SfaNI GCATC 1 cut(s) 740
SfuI TTCGAA 1 cut(s) 587
SmaI CCCGGG 1 cut(s) 620
SmiMI CAYNNNNRTG 3 cut(s) 105, 248, 526
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 5 cut(s) 63, 374, 476, 637, 790
SsiI CCGC 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 258, 617, 618
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 271, 356
TaqI TCGA 2 cut(s) 514, 587
TasI AATT 5 cut(s) 63, 374, 476, 637, 790
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 3 cut(s) 229, 255, 644
Tru1I TTAA 5 cut(s) 164, 404, 546, 705, 793
Tru9I TTAA 5 cut(s) 164, 404, 546, 705, 793
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 209, 232, 271, 689
TspGWI ACGGA 1 cut(s) 770
TspMI CCCGGG 1 cut(s) 618
XmaI CCCGGG 1 cut(s) 618
XmiI GTMKAC 1 cut(s) 514
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.