Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018305

Physical Location & Seq

Genomic Coordinates Forward (+)

23569538 .. 23571107

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAAGAATCATAATTACCCTCACTATCCCTCTGTTTTACTTCTTTTTCTTCTCTTTGTTATCTCACCAAACCATGTCTCAACCTGACCACATATTTACTGTCTGCAATCCTACCAACAACTTTACACAAACCAGTTCATACGAAACCAACCGCGACACCCTACTCGCCTCTCTCCGCGAGTCTTCCTCTCTCGGACACTATTCAAACGCCACAGAAGGTCTTAGCCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGTAGACTGTGTCCAAACCGCAACAACCGAGATCGCCTCAAATTGTACTCTTAACAAAAGAGCCGTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTCCTCTGAATTGGAAATCGTACCAAGCATCACTATTTACTCTCTTCGCTCTGCTCCAAACCCGACTCGGTTCAATCAAACACTTACTGAAAAATTCAGCGAATTGATATTCAACGTATCTTCGTCCTCTTTGGTTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAGGGTTCTTATGATTTAGACACAATGGTTCAGTGTAGTCCTGATCTTGATATATTCAACTGCACCGTTTGTCTTCGAGTTGCGTTCTTTAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACGCCAAGATCTTTACTCCTAAATGTCTTTTGAGGTTTCAAACCTCTGTTTTGTTATCTCCACCGCCATCTCCATCGGCTCCGCCTCCTCGATCTCCACCGCCTAAATCATCGCCACCTTCTTCTTTACCACAGACGCCATCGCCGCCGCTGGTTTTCACGCCGCCACAGAACGTTCCAAATCCTAGCGGATCGTTTTCCTTTAACGTTCTTAAAGGAAATGTAATATTTGGGAGAATTGTTGTTACAATGACAGCTTTGGTGTTTGCACTTGTGGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

324

Amino Acids

35.75

Weight (kDa)

5.58

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	36 - 129	1e-23	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63550 AT1G63570 AT1G63570 AT1G63570 AT1G63580 AT1G63590 AT1G63600 AT5G41280 AT5G41290 AT5G41300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	2 cut(s)	156, 180
AclI	AACGTT	2 cut(s)	864, 897
AclWI	GGATC	2 cut(s)	555, 889
AcsI	RAATTY	2 cut(s)	488, 663
AcyI	GRCGYC	1 cut(s)	827
AfaI	GTAC	2 cut(s)	331, 417
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	207, 469, 508, 628, 669, 731
AluBI	AGCT	1 cut(s)	947
AluI	AGCT	1 cut(s)	947
Alw26I	GTCTC	2 cut(s)	84, 258
AlwI	GGATC	2 cut(s)	555, 889
ApoI	RAATTY	2 cut(s)	488, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AsuHPI	GGTGA	2 cut(s)	59, 262
BbsI	GAAGAC	2 cut(s)	177, 635
BccI	CCATC	3 cut(s)	766, 772, 838
BceAI	ACGGC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	84, 258
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	256
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	3 cut(s)	836, 839, 854
BlsI	GCNGC	3 cut(s)	837, 840, 855
BmiI	GGNNCC	2 cut(s)	531, 771
BmsI	GCATC	2 cut(s)	287, 432
BpiI	GAAGAC	2 cut(s)	177, 635
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 305, 337
BsaHI	GRCGYC	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	276, 388, 768
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	2 cut(s)	156, 180
BsmAI	GTCTC	2 cut(s)	84, 258
Bsp143I	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
Bsp19I	CCATGG	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	156, 180
BspLI	GGNNCC	2 cut(s)	531, 771
BspPI	GGATC	2 cut(s)	555, 889
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
BssNI	GRCGYC	1 cut(s)	827
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	4 cut(s)	103, 238, 293, 637
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	827
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	156, 180
BstKTI	GATC	7 cut(s)	318, 550, 616, 702, 785, 884, 970
BstMAI	GTCTC	2 cut(s)	84, 258
BstMBI	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	835
BstSFI	CTRYAG	1 cut(s)	256
BstUI	CGCG	2 cut(s)	156, 180
BstV2I	GAAGAC	2 cut(s)	177, 635
BstX2I	RGATCY	2 cut(s)	699, 967
BstYI	RGATCY	2 cut(s)	699, 967
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	786, 816
BtsIMutI	CAGTG	1 cut(s)	608
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	330, 416
CviAII	CATG	2 cut(s)	76, 242
CviJI	RGCY	4 cut(s)	228, 347, 770, 947
CviKI_1	RGCY	4 cut(s)	228, 347, 770, 947
CviQI	GTAC	2 cut(s)	330, 416
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	7 cut(s)	317, 549, 615, 701, 784, 883, 969
DpnII	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	79, 245
FatI	CATG	2 cut(s)	75, 241
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	836, 839, 854
Fsp4HI	GCNGC	3 cut(s)	836, 839, 854
FspBI	CTAG	1 cut(s)	876
GluI	GCNGC	3 cut(s)	836, 839, 854
HgaI	GACGC	1 cut(s)	835
Hin1I	GRCGYC	1 cut(s)	827
Hin1II	CATG	2 cut(s)	79, 245
HinfI	GANTC	3 cut(s)	9, 182, 460
HphI	GGTGA	2 cut(s)	59, 262
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	197, 403, 571
Hpy188III	TCNNGA	3 cut(s)	551, 611, 617
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	212, 403, 819
HpyCH4III	ACNGT	4 cut(s)	103, 238, 293, 637
HpyCH4IV	ACGT	4 cut(s)	510, 556, 864, 897
HpyCH4V	TGCA	3 cut(s)	108, 633, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	835
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	4 cut(s)	510, 556, 864, 897
Hsp92I	GRCGYC	1 cut(s)	827
Hsp92II	CATG	2 cut(s)	79, 245
Kzo9I	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
LmnI	GCTCC	2 cut(s)	454, 775
LpnPI	CCDG	5 cut(s)	99, 148, 243, 624, 827
LweI	GCATC	2 cut(s)	287, 432
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	4 cut(s)	510, 556, 864, 897
MaeIII	GTNAC	3 cut(s)	559, 689, 934
MalI	GATC	7 cut(s)	317, 549, 615, 701, 784, 883, 969
MboI	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
MboII	GAAGA	6 cut(s)	43, 177, 431, 507, 635, 804
MflI	RGATCY	2 cut(s)	699, 967
MluCI	AATT	7 cut(s)	15, 325, 404, 488, 497, 663, 927
MlyI	GAGTC	2 cut(s)	191, 454
MseI	TTAA	3 cut(s)	336, 894, 903
MspA1I	CMGCKG	1 cut(s)	841
MvnI	CGCG	2 cut(s)	156, 180
MwoI	GCNNNNNNNGC	1 cut(s)	835
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
NlaIII	CATG	2 cut(s)	79, 245
NlaIV	GGNNCC	2 cut(s)	531, 771
NmuCI	GTSAC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	9
PflFI	GACNNNGTC	2 cut(s)	236, 293
PkrI	GCNGC	3 cut(s)	837, 840, 855
PleI	GAGTC	2 cut(s)	190, 454
PpsI	GAGTC	2 cut(s)	190, 454
Psp1406I	AACGTT	2 cut(s)	864, 897
PspN4I	GGNNCC	2 cut(s)	531, 771
PsuI	RGATCY	2 cut(s)	699, 967
PsyI	GACNNNGTC	2 cut(s)	236, 293
RsaI	GTAC	2 cut(s)	331, 417
RsaNI	GTAC	2 cut(s)	330, 416
SaqAI	TTAA	3 cut(s)	336, 894, 903
SatI	GCNGC	3 cut(s)	836, 839, 854
Sau3AI	GATC	7 cut(s)	315, 547, 613, 699, 782, 881, 967
SchI	GAGTC	2 cut(s)	191, 454
SfaNI	GCATC	2 cut(s)	287, 432
SfcI	CTRYAG	1 cut(s)	256
Sse9I	AATT	7 cut(s)	15, 325, 404, 488, 497, 663, 927
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	1 cut(s)	876
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	4 cut(s)	103, 238, 293, 637
TaiI	ACGT	4 cut(s)	513, 559, 867, 900
TaqI	TCGA	3 cut(s)	376, 646, 781
TasI	AATT	7 cut(s)	15, 325, 404, 488, 497, 663, 927
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	3 cut(s)	838, 841, 856
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	336, 894, 903
Tru9I	TTAA	3 cut(s)	336, 894, 903
TscAI	CASTG	1 cut(s)	608
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	608
Tth111I	GACNNNGTC	2 cut(s)	236, 293
XapI	RAATTY	2 cut(s)	488, 663
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.