Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018305

Physical Location & Seq

Genomic Coordinates Forward (+)

16512154 .. 16513671

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAACAACAAAGAAACTCTTTGCTCTTCTCTGTCTCTTCGTCACCATGAACCAAGCTATCTCCGTATCCGATCCCGACGACATGGAAACTTTCTGCATGAAATCATCCAGAAACACCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCCACTCTTAGCAACCAATCATCATTCGCTAACTACTACAATCTCACGACCGGTCTAGCTTCAGACACCGTCCATGGAATGTTCTTATGCACAGGAGACGTCAACAGAACAACGTGCAACGCCTGCGTCAAGAACGCAACAATCGAGATTGCCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACAACGTAGATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAATCCTAGCTATTGGTGGTCATCTAACGATTTAATACCCAAATCATTTGGTAAATTTGGACAGAGACTGTCTGACAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTACGCCATATTATCTTATGGATACAACTAGATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAGTGTACTCCTGATTTGGATCCAAGAAACTGCACCACATGTCTGAAACTTGCATTGCAAGAACTCACTGAATGCTGTGGTAATCAGGTTTGGGCTTTCATCTACACTCCCAACTGTATGGTGAGTTTTGATACATACAATTCATCCTTGCCGCCGCTTCCACCGCCAAGTCGCAGCGGTTCCTTCTCCCATAGAGGAAACAACAAATTACTTGGGGGAATGGTTCTTGCTGTGTCCGTTTCGGTGTTTGCATTTTTGAGTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

287

Amino Acids

32.08

Weight (kDa)

5.92

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 127	5.3e-22	Salt stress response/antifungal
Stress-antifung	PF01657	190 - 244	9.9e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63550 AT1G63570 AT1G63570 AT1G63570 AT1G63580 AT1G63590 AT1G63600 AT5G41280 AT5G41290 AT5G41300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AciI	CCGC	4 cut(s)	746, 749, 758, 771
AclWI	GGATC	3 cut(s)	68, 608, 621
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	325, 601
AflIII	ACRYGT	1 cut(s)	632
AgeI	ACCGGT	1 cut(s)	212
AluBI	AGCT	3 cut(s)	59, 221, 417
AluI	AGCT	3 cut(s)	59, 221, 417
Alw26I	GTCTC	4 cut(s)	41, 252, 398, 466
AlwI	GGATC	3 cut(s)	68, 608, 621
AlwNI	CAGNNNCTG	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	768
ApoI	RAATTY	1 cut(s)	461
AsiGI	ACCGGT	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	37, 727
BamHI	GGATCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	780
BccI	CCATC	1 cut(s)	339
BciVI	GTATCC	2 cut(s)	79, 544
BcoDI	GTCTC	4 cut(s)	41, 252, 398, 466
BfaI	CTAG	5 cut(s)	123, 218, 401, 414, 558
BfuI	GTATCC	2 cut(s)	79, 544
BisI	GCNGC	3 cut(s)	746, 749, 769
BlsI	GCNGC	3 cut(s)	747, 750, 770
BmiI	GGNNCC	2 cut(s)	615, 775
BpiI	GAAGAC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	647
Bse8I	GATNNNNATC	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	107, 737
BseJI	GATNNNNATC	1 cut(s)	612
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	780
BsgI	GTGCAG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	213
BsmAI	GTCTC	4 cut(s)	41, 252, 398, 466
BsmBI	CGTCTC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	671
Bso31I	GGTCTC	1 cut(s)	398
Bsp143I	GATC	4 cut(s)	73, 506, 577, 613
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	4 cut(s)	746, 749, 758, 771
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	615, 775
BspPI	GGATC	3 cut(s)	68, 608, 621
BspQI	GCTCTTC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	73, 506, 577, 613
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	4 cut(s)	232, 323, 477, 710
Bst6I	CTCTTC	3 cut(s)	33, 44, 162
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	170, 376
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	107, 737
BstKTI	GATC	4 cut(s)	76, 509, 580, 616
BstMAI	GTCTC	4 cut(s)	41, 252, 398, 466
BstMBI	GATC	4 cut(s)	73, 506, 577, 613
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 757
BstNSI	RCATGY	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	780
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	2 cut(s)	79, 544
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	107, 737
BtsIMutI	CAGTG	2 cut(s)	602, 660
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	212
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	324, 600
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	5 cut(s)	49, 85, 100, 236, 633
CviJI	RGCY	4 cut(s)	59, 221, 417, 689
CviKI_1	RGCY	4 cut(s)	59, 221, 417, 689
CviQI	GTAC	2 cut(s)	324, 600
DdeI	CTNAG	2 cut(s)	170, 376
DpnI	GATC	4 cut(s)	75, 508, 579, 615
DpnII	GATC	4 cut(s)	73, 506, 577, 613
Eam1104I	CTCTTC	3 cut(s)	33, 44, 162
EarI	CTCTTC	3 cut(s)	33, 44, 162
Eco130I	CCWWGG	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	5 cut(s)	52, 88, 103, 239, 636
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	5 cut(s)	48, 84, 99, 235, 632
Fnu4HI	GCNGC	3 cut(s)	746, 749, 769
FokI	GGATG	2 cut(s)	94, 724
Fsp4HI	GCNGC	3 cut(s)	746, 749, 769
FspBI	CTAG	5 cut(s)	123, 218, 401, 414, 558
GluI	GCNGC	3 cut(s)	746, 749, 769
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	52, 88, 103, 239, 636
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	561, 584
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	37, 727
Hpy166II	GTNNAC	3 cut(s)	265, 531, 600
Hpy188I	TCNGA	5 cut(s)	73, 226, 379, 481, 639
Hpy188III	TCNNGA	9 cut(s)	77, 111, 208, 292, 307, 335, 394, 581, 605
Hpy8I	GTNNAC	3 cut(s)	265, 531, 600
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	787
HpyCH4III	ACNGT	4 cut(s)	232, 323, 477, 710
HpyCH4IV	ACGT	3 cut(s)	261, 275, 354
HpyCH4V	TGCA	7 cut(s)	99, 252, 279, 627, 647, 652, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 757
HpyF3I	CTNAG	2 cut(s)	170, 376
HpySE526I	ACGT	3 cut(s)	261, 275, 354
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	52, 88, 103, 239, 636
Kzo9I	GATC	4 cut(s)	73, 506, 577, 613
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	124, 226, 240, 298, 618, 665
Lsp1109I	GCAGC	1 cut(s)	780
MaeI	CTAG	5 cut(s)	123, 218, 401, 414, 558
MaeII	ACGT	3 cut(s)	261, 275, 354
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	75, 508, 579, 615
MboI	GATC	4 cut(s)	73, 506, 577, 613
MboII	GAAGA	5 cut(s)	20, 31, 149, 379, 513
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	3 cut(s)	461, 733, 800
MlyI	GAGTC	1 cut(s)	593
MnlI	CCTC	2 cut(s)	401, 782
MseI	TTAA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	771
MspI	CCGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	285, 757
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	4 cut(s)	73, 506, 577, 613
NlaIII	CATG	5 cut(s)	52, 88, 103, 239, 636
NlaIV	GGNNCC	2 cut(s)	615, 775
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	636
PciI	ACATGT	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	671
PfeI	GAWTC	1 cut(s)	561
PflFI	GACNNNGTC	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	747, 750, 770
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	1 cut(s)	632
PspN4I	GGNNCC	2 cut(s)	615, 775
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	613
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	2 cut(s)	325, 601
RsaNI	GTAC	2 cut(s)	324, 600
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	746, 749, 769
Sau3AI	GATC	4 cut(s)	73, 506, 577, 613
SchI	GAGTC	1 cut(s)	593
SetI	ASST	7 cut(s)	61, 223, 264, 278, 357, 419, 684
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	3 cut(s)	461, 733, 800
SsiI	CCGC	4 cut(s)	746, 749, 758, 771
SspMI	CTAG	5 cut(s)	123, 218, 401, 414, 558
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	4 cut(s)	232, 323, 477, 710
TaiI	ACGT	3 cut(s)	264, 278, 357
TaqI	TCGA	4 cut(s)	306, 334, 370, 564
TasI	AATT	3 cut(s)	461, 733, 800
TatI	WGTACW	2 cut(s)	323, 599
TauI	GCSGC	2 cut(s)	748, 751
TfiI	GAWTC	1 cut(s)	561
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	602, 667
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	768
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	65, 116, 513, 682, 726
TspGWI	ACGGA	2 cut(s)	55, 820
TspRI	CASTG	2 cut(s)	602, 667
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	636
XspI	CTAG	5 cut(s)	123, 218, 401, 414, 558
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.