Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018305

Physical Location & Seq

Genomic Coordinates Forward (+)

23577329 .. 23578486

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACAAGAATCATTGATGTTTCCCTGTTTTGCTTCTTCCTATTCTCTCTTGGAGCCATGTCCCAACCTTCTCAAAATCTAACTGATTGCAACCAATTTCCCGACACTTATCAATCAAACCGCAACACCGTCCTCTCCACTCTTCGTAATCATTCCTCCCTCGGAAGCTATTACTTCAATGCCACGGCCGGTCTAAGCCCAAACACAGTCTATGGCATGTTCCTGTGCATAGGAAACATAAGCAAAACATCTTGTTCAAACTGTGTCCATTCCGCAACGTTAGAAATGGATAAATCCTGTGAATCTCATGACACATCTTTCATGTTCTCTGACGAGTGTATGGTTCGGTACTCGGATAATTCTTTCTTTTCACTCGTAGAAGATTCACCTGCCACCTTTAGTTACTCTCAGAATGATTCTTTGAGTTATCCGCAATTTTACAATCAAACACTTCCTGGAAAATTAGACGAGCTTATCCTCAAAGCCCCCTCATCTTTTTCGTCACCGGTTCCATATTTTGTGGAAGATAAAGAACATGTGACTCAAGTGGAAGGTTCGTATGATTTAGAGGCAATGGCTCAGTGTAGTCCTGATCTTGATCCAAGCAGCTGCACCGTGTGCTTGGGACTTGTGGTCGAAAAATTCTCCGAATGTTGCAGCCAATCTCGTTGGGCTCGGATCCACTTTCCTAAATGTCTTCTGAGGTATGACATCTCTGCTTTGCAACCAAACCTAACGAGTCTTGGCGTTACAACAAAAGGAGATGATATATTTGGGAGAACGTTTATTGCAATCATGATAGGTTTACTAATGGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

273

Amino Acids

30.35

Weight (kDa)

4.69

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	34 - 119	6e-18	Salt stress response/antifungal
Stress-antifung	PF01657	180 - 237	9.7e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63550 AT1G63570 AT1G63570 AT1G63570 AT1G63580 AT1G63590 AT1G63600 AT5G41280 AT5G41290 AT5G41300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AciI	CCGC	3 cut(s)	121, 273, 431
AclI	AACGTT	2 cut(s)	278, 782
AclWI	GGATC	3 cut(s)	593, 673, 686
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	641
AdeI	CACNNNGTG	1 cut(s)	618
AfaI	GTAC	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	535
AgeI	ACCGGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	178, 258
AhdI	GACNNNNNGTC	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	168, 472, 609
AluI	AGCT	3 cut(s)	168, 472, 609
AlwI	GGATC	3 cut(s)	593, 673, 686
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	606, 609, 657
ApoI	RAATTY	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	378, 495
BamHI	GGATCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	689
BbvI	GCAGC	3 cut(s)	596, 618, 669
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	607, 610, 658
BlsI	GCNGC	3 cut(s)	608, 611, 659
Bme1390I	CCNGG	1 cut(s)	456
BmeRI	GACNNNNNGTC	1 cut(s)	632
BmiI	GGNNCC	3 cut(s)	55, 510, 680
BmrFI	CCNGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	160, 183
BsaWI	WCCGGW	1 cut(s)	505
Bse118I	RCCGGY	2 cut(s)	188, 505
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	160, 183
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	422, 593, 692
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	596, 618, 669
BsgI	GTGCAG	1 cut(s)	595
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	189, 506
BslFI	GGGAC	2 cut(s)	46, 639
BsmFI	GGGAC	2 cut(s)	46, 639
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	3 cut(s)	592, 598, 678
BspACI	CCGC	3 cut(s)	121, 273, 431
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	421, 592, 693
BspHI	TCATGA	2 cut(s)	307, 795
BspLI	GGNNCC	3 cut(s)	55, 510, 680
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	593, 673, 686
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	2 cut(s)	188, 505
BssAI	RCCGGY	2 cut(s)	188, 505
BssECI	CCNNGG	2 cut(s)	160, 183
BssMI	GATC	3 cut(s)	592, 598, 678
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	130, 208, 263, 616
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	194, 408, 579, 701
BstDSI	CCRYGG	1 cut(s)	183
BstKTI	GATC	3 cut(s)	595, 601, 681
BstMBI	GATC	3 cut(s)	592, 598, 678
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	2 cut(s)	220, 539
BstSCI	CCNGG	1 cut(s)	454
BstV1I	GCAGC	3 cut(s)	596, 618, 669
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BstZI	CGGCCG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	587
BveI	ACCTGC	1 cut(s)	397
CciI	TCATGA	2 cut(s)	307, 795
Cfr10I	RCCGGY	2 cut(s)	188, 505
Csp6I	GTAC	1 cut(s)	349
CspAI	ACCGGT	1 cut(s)	505
CviAII	CATG	6 cut(s)	58, 217, 308, 322, 536, 796
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	194, 408, 579, 701
DpnI	GATC	3 cut(s)	594, 600, 680
DpnII	GATC	3 cut(s)	592, 598, 678
DraIII	CACNNNGTG	1 cut(s)	618
DriI	GACNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	186
EagI	CGGCCG	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	676
FaeI	CATG	6 cut(s)	61, 220, 311, 325, 539, 799
FaqI	GGGAC	2 cut(s)	46, 639
FatI	CATG	6 cut(s)	57, 216, 307, 321, 535, 795
Fnu4HI	GCNGC	3 cut(s)	607, 610, 658
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	3 cut(s)	607, 610, 658
GluI	GCNGC	3 cut(s)	607, 610, 658
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	189, 506
Hin1II	CATG	6 cut(s)	61, 220, 311, 325, 539, 799
HinfI	GANTC	6 cut(s)	9, 302, 383, 416, 541, 739
HpaII	CCGG	2 cut(s)	189, 506
HphI	GGTGA	2 cut(s)	378, 495
Hpy166II	GTNNAC	1 cut(s)	806
Hpy188I	TCNGA	7 cut(s)	164, 331, 355, 411, 649, 678, 702
Hpy188III	TCNNGA	5 cut(s)	101, 308, 590, 596, 796
Hpy8I	GTNNAC	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	78, 545
HpyCH4III	ACNGT	4 cut(s)	130, 208, 263, 616
HpyCH4IV	ACGT	2 cut(s)	278, 782
HpyCH4V	TGCA	6 cut(s)	90, 228, 612, 657, 724, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	4 cut(s)	194, 408, 579, 701
HpySE526I	ACGT	2 cut(s)	278, 782
Hsp92II	CATG	6 cut(s)	61, 220, 311, 325, 539, 799
Kzo9I	GATC	3 cut(s)	592, 598, 678
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	38, 202, 236, 310, 402, 441, 468, 519, 603
Lsp1109I	GCAGC	3 cut(s)	596, 618, 669
MaeII	ACGT	2 cut(s)	278, 782
MaeIII	GTNAC	4 cut(s)	401, 501, 538, 748
MalI	GATC	3 cut(s)	594, 600, 680
MboI	GATC	3 cut(s)	592, 598, 678
MboII	GAAGA	5 cut(s)	28, 134, 392, 536, 689
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	5 cut(s)	95, 358, 434, 461, 641
MlyI	GAGTC	2 cut(s)	535, 748
MnlI	CCTC	7 cut(s)	143, 166, 170, 488, 499, 562, 696
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	2 cut(s)	189, 506
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeII	GATC	3 cut(s)	592, 598, 678
NlaIII	CATG	6 cut(s)	61, 220, 311, 325, 539, 799
NlaIV	GGNNCC	3 cut(s)	55, 510, 680
NmuCI	GTSAC	2 cut(s)	501, 538
NspI	RCATGY	2 cut(s)	220, 539
PagI	TCATGA	2 cut(s)	307, 795
PaqCI	CACCTGC	1 cut(s)	397
PciI	ACATGT	1 cut(s)	535
PfeI	GAWTC	4 cut(s)	9, 302, 383, 416
PfoI	TCCNGGA	1 cut(s)	454
PinAI	ACCGGT	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	608, 611, 659
PleI	GAGTC	2 cut(s)	535, 747
PpsI	GAGTC	2 cut(s)	535, 747
PscI	ACATGT	1 cut(s)	535
Psp1406I	AACGTT	2 cut(s)	278, 782
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	55, 510, 680
PsuI	RGATCY	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	609
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SatI	GCNGC	3 cut(s)	607, 610, 658
Sau3AI	GATC	3 cut(s)	592, 598, 678
SchI	GAGTC	2 cut(s)	535, 748
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	5 cut(s)	95, 358, 434, 461, 641
SsiI	CCGC	3 cut(s)	121, 273, 431
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	4 cut(s)	130, 208, 263, 616
TaiI	ACGT	2 cut(s)	281, 785
TaqI	TCGA	1 cut(s)	636
TasI	AATT	5 cut(s)	95, 358, 434, 461, 641
TfiI	GAWTC	4 cut(s)	9, 302, 383, 416
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	2 cut(s)	501, 538
TseI	GCWGC	3 cut(s)	606, 609, 657
Tsp45I	GTSAC	2 cut(s)	501, 538
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	2 cut(s)	220, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.