Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018305

Physical Location & Seq

Genomic Coordinates Forward (+)

16509507 .. 16511078

Gene Structure 1572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAACAACAAAGAAACTCTCTGTTCTTCTCTGTCTCTTCTTCACCATGAACCAAGCTATCTCCGAATCCGATTCTGACGAGCACATGGCGACTTTTTGCAATGATTCATCCGGAAATTTCACTCGCAATACAACTTACAACACAAATCTCAACACTCTTCTCTCCACTCTTAGCAACCAATCATCATTCGCTAACTACTACAATCTCACGACCGGTTTAGGTTCAGACACAGTCCATGGAATGTTCTTATGCATAGGAGATGTCAACAGAACAACATGCAACGCCTGCGTCAAGAACGCAACAATCGAGATTGCCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACTACTTCTCTTGTATGGTTCGCTACTCAGATAAGTTCTTCCTCTCCACCTTAGAGACAAAGCCTAATACTTATTGGTCGTCTGATGATCCAATACCCAAATCATATGATAAATTTGGACAGAGACTGTCTGACAAAATGGGAGAAGTTATCATCAGATCATCTTTGTTATCTTCTTCGTTTACGCCATATTATCTTATGGATACCACTACGTTCGATAACTTGTATGATCTAGAGTCTGTTGTTCAGTGTAGTCCTCATTTGGATCCAAAAAACTGCACTACATGTCTGAAACTTGCGTTGCAAGAACTCACTCAATGCTGTGGTGATCAGCTTTGGGCTTTCATCTTCACTCCCAAATGTTTAGTGAGTTTTGATACCTCAAATTCATCGTCATTGCCACCGCTTCCACCGCCAAGTCGCAGCGGTTCCTTCTCCATTAGAGGAAATAACAAAATACTTGTGGGAATGATTCTTGCTGTTTCGGTGTTTGCATTTTTGGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

286

Amino Acids

31.88

Weight (kDa)

5.56

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	34 - 128	8.6e-24	Salt stress response/antifungal
Stress-antifung	PF01657	181 - 244	6.1e-06	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63550 AT1G63570 AT1G63570 AT1G63570 AT1G63580 AT1G63590 AT1G63600 AT5G41280 AT5G41290 AT5G41300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	113
AciI	CCGC	3 cut(s)	755, 764, 777
AclWI	GGATC	3 cut(s)	434, 611, 624
AcsI	RAATTY	3 cut(s)	118, 464, 736
AfaI	GTAC	1 cut(s)	328
AflIII	ACRYGT	1 cut(s)	635
AgeI	ACCGGT	1 cut(s)	215
AluBI	AGCT	2 cut(s)	59, 685
AluI	AGCT	2 cut(s)	59, 685
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	3 cut(s)	41, 401, 469
AlwI	GGATC	3 cut(s)	434, 611, 624
AlwNI	CAGNNNCTG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	774
ApoI	RAATTY	3 cut(s)	118, 464, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AsiGI	ACCGGT	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	37, 689
BamHI	GGATCC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	786
BccI	CCATC	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	547
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	3 cut(s)	41, 401, 469
BfaI	CTAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	775
BlsI	GCNGC	1 cut(s)	776
BmiI	GGNNCC	2 cut(s)	618, 781
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	113, 215
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	109, 746
BseAI	TCCGGA	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	110
BseMI	GCAATG	2 cut(s)	109, 746
BseMII	CTCAG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	786
BsgI	GTGCAG	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	216
BshTI	ACCGGT	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	114, 216
BsmAI	GTCTC	3 cut(s)	41, 401, 469
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	439, 509, 580, 616, 679
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	3 cut(s)	755, 764, 777
BspCNI	CTCAG	1 cut(s)	392
BspEI	TCCGGA	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	618, 781
BspPI	GGATC	3 cut(s)	434, 611, 624
BsrDI	GCAATG	2 cut(s)	109, 746
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	439, 509, 580, 616, 679
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	3 cut(s)	235, 326, 480
Bst6I	CTCTTC	2 cut(s)	44, 165
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	173, 379, 403
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	5 cut(s)	442, 512, 583, 619, 682
BstMAI	GTCTC	3 cut(s)	41, 401, 469
BstMBI	GATC	5 cut(s)	439, 509, 580, 616, 679
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 763
BstNSI	RCATGY	2 cut(s)	282, 639
BstV1I	GCAGC	1 cut(s)	786
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	215
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	327
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	5 cut(s)	49, 88, 239, 279, 636
CviJI	RGCY	4 cut(s)	59, 415, 685, 692
CviKI_1	RGCY	4 cut(s)	59, 415, 685, 692
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	173, 379, 403
DpnI	GATC	5 cut(s)	441, 511, 582, 618, 681
DpnII	GATC	5 cut(s)	439, 509, 580, 616, 679
Eam1104I	CTCTTC	2 cut(s)	44, 165
EarI	CTCTTC	2 cut(s)	44, 165
Eco130I	CCWWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	5 cut(s)	52, 91, 242, 282, 639
FatI	CATG	5 cut(s)	48, 87, 238, 278, 635
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	775
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	775
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	1 cut(s)	775
HapII	CCGG	2 cut(s)	114, 216
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	52, 91, 242, 282, 639
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	68, 74, 107, 587, 823
HpaII	CCGG	2 cut(s)	114, 216
HphI	GGTGA	2 cut(s)	37, 689
Hpy166II	GTNNAC	2 cut(s)	268, 534
Hpy188I	TCNGA	9 cut(s)	67, 73, 79, 229, 382, 436, 484, 509, 642
Hpy188III	TCNNGA	6 cut(s)	114, 211, 295, 310, 338, 584
Hpy8I	GTNNAC	2 cut(s)	268, 534
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	3 cut(s)	235, 326, 480
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	6 cut(s)	102, 255, 282, 630, 655, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 763
HpyF3I	CTNAG	3 cut(s)	173, 379, 403
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	5 cut(s)	52, 91, 242, 282, 639
Kpn2I	TCCGGA	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	439, 509, 580, 616, 679
LpnPI	CCDG	3 cut(s)	127, 229, 301
Lsp1109I	GCAGC	1 cut(s)	786
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	1 cut(s)	563
MalI	GATC	5 cut(s)	441, 511, 582, 618, 681
MboI	GATC	5 cut(s)	439, 509, 580, 616, 679
MboII	GAAGA	8 cut(s)	20, 31, 34, 152, 382, 516, 519, 691
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	118, 464, 736
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	4 cut(s)	404, 618, 742, 788
Mph1103I	ATGCAT	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	777
MspI	CCGG	2 cut(s)	114, 216
MwoI	GCNNNNNNNGC	2 cut(s)	288, 763
NcoI	CCATGG	1 cut(s)	238
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	5 cut(s)	439, 509, 580, 616, 679
NlaIII	CATG	5 cut(s)	52, 91, 242, 282, 639
NlaIV	GGNNCC	2 cut(s)	618, 781
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	2 cut(s)	282, 639
PciI	ACATGT	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	68, 74, 107, 823
PflFI	GACNNNGTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	776
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PscI	ACATGT	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	618, 781
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	1 cut(s)	775
Sau3AI	GATC	5 cut(s)	439, 509, 580, 616, 679
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	61, 226, 404, 566, 687, 734
Sse9I	AATT	3 cut(s)	118, 464, 736
SsiI	CCGC	3 cut(s)	755, 764, 777
SspMI	CTAG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	235, 326, 480
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	3 cut(s)	309, 337, 567
TasI	AATT	3 cut(s)	118, 464, 736
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	68, 74, 107, 823
TscAI	CASTG	1 cut(s)	605
TseI	GCWGC	1 cut(s)	774
TspDTI	ATGAA	4 cut(s)	65, 99, 685, 729
TspRI	CASTG	1 cut(s)	605
Tth111I	GACNNNGTC	1 cut(s)	233
XapI	RAATTY	3 cut(s)	118, 464, 736
XbaI	TCTAGA	1 cut(s)	583
XceI	RCATGY	2 cut(s)	282, 639
XspI	CTAG	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.