Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018305

Physical Location & Seq

Genomic Coordinates Forward (+)

16514929 .. 16516331

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAACAACCAAGAAACTCTCTCCTATCTTCTGCTTCTCTTCTCTCTTATGTCTCTTCTTCACCATGAACCAAGCTGTCTCCGAAACAGACCACATGGACACTTTCTGCATTGATTCATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCTCAACACCATGCTCTCTACTTTTCGCAACCAATCATCCATCGTTAACAATTACAATCTCACAACTGGTCTAGCTTCAGACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAACATAACAACGTGCAACAACTGCGTCAAGAATGCAACAATCGAGATTGTCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACTACATCGATTGTATGGTTCGTTACTCAGATAAGTTCTTCCTCTCCACCTTTGAGAAAAAGCCTAATAGCATTTGGAGCGGTGATGATCCAATACCGAAATCACTAGGTCCGTTCAAAAAGAGATTGTATAAGAAAATGGGAGAGGCTATCGTAAGATCGTCTACGTTGTCTTCCGCTCTCACGCCGTATTATTACTTGGATGTAACTAGATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCCTGAAAACTGTACCATATGCCTTGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGACAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATATGATCACAACTTCACCATTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCGTGCTCCATTAGAGGAAATAGTGAAATATTTTGGGGAATGATCATTCTGGCAGCTTTGGTGTTTACATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

287

Amino Acids

32.47

Weight (kDa)

5.95

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	37 - 131	9.3e-21	Salt stress response/antifungal
Stress-antifung	PF01657	185 - 245	6.9e-06	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63550 AT1G63570 AT1G63570 AT1G63570 AT1G63580 AT1G63590 AT1G63600 AT5G41280 AT5G41290 AT5G41300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccBSI	CCGCTC	2 cut(s)	441, 539
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	5 cut(s)	441, 537, 758, 761, 786
AclWI	GGATC	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	2 cut(s)	337, 640
AgsI	TTSAA	3 cut(s)	478, 625, 653
AluBI	AGCT	3 cut(s)	77, 233, 845
AluI	AGCT	3 cut(s)	77, 233, 845
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	3 cut(s)	59, 85, 264
AlwI	GGATC	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	842
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	5 cut(s)	55, 455, 741, 762, 770
AvaII	GGWCC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	4 cut(s)	206, 351, 572, 775
BceAI	ACGGC	1 cut(s)	532
BclI	TGATCA	2 cut(s)	738, 831
BcoDI	GTCTC	3 cut(s)	59, 85, 264
BfaI	CTAG	3 cut(s)	230, 467, 570
BisI	GCNGC	3 cut(s)	758, 761, 843
BlsI	GCNGC	3 cut(s)	759, 762, 844
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	139, 229
Bse3DI	GCAATG	1 cut(s)	752
BseCI	ATCGAT	1 cut(s)	369
BseGI	GGATG	3 cut(s)	119, 194, 568
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	139, 229
BseXI	GCAGC	1 cut(s)	854
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	797
BsmAI	GTCTC	3 cut(s)	59, 85, 264
BsmBI	CGTCTC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
BspACI	CCGC	5 cut(s)	441, 537, 758, 761, 786
BspCNI	CTCAG	1 cut(s)	401
BspDI	ATCGAT	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	2 cut(s)	441, 539
BsrDI	GCAATG	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	139, 229
BssMI	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
BssNI	GRCGYC	1 cut(s)	273
Bst4CI	ACNGT	6 cut(s)	244, 335, 638, 680, 722, 774
Bst6I	CTCTTC	2 cut(s)	46, 62
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	119, 194, 568
BstKTI	GATC	6 cut(s)	451, 521, 592, 708, 741, 834
BstMAI	GTCTC	3 cut(s)	59, 85, 264
BstMBI	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 438, 792
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	119, 194, 568
BtsIMutI	CAGTG	2 cut(s)	132, 614
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	336, 639
CviAII	CATG	3 cut(s)	67, 97, 169
CviJI	RGCY	7 cut(s)	77, 233, 424, 509, 582, 701, 845
CviKI_1	RGCY	7 cut(s)	77, 233, 424, 509, 582, 701, 845
CviQI	GTAC	2 cut(s)	336, 639
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	6 cut(s)	450, 520, 591, 707, 740, 833
DpnII	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
Eam1104I	CTCTTC	2 cut(s)	46, 62
EarI	CTCTTC	2 cut(s)	46, 62
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	3 cut(s)	70, 100, 172
FatI	CATG	3 cut(s)	66, 96, 168
FauNDI	CATATG	1 cut(s)	644
FbaI	TGATCA	2 cut(s)	738, 831
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	3 cut(s)	758, 761, 843
FokI	GGATG	3 cut(s)	106, 181, 575
Fsp4HI	GCNGC	3 cut(s)	758, 761, 843
FspBI	CTAG	3 cut(s)	230, 467, 570
GluI	GCNGC	3 cut(s)	758, 761, 843
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	70, 100, 172
HincII	GTYRAC	2 cut(s)	205, 277
HindII	GTYRAC	2 cut(s)	205, 277
HinfI	GANTC	3 cut(s)	116, 596, 625
HpaI	GTTAAC	1 cut(s)	205
HphI	GGTGA	5 cut(s)	55, 455, 741, 762, 770
Hpy166II	GTNNAC	5 cut(s)	205, 277, 525, 617, 855
Hpy188I	TCNGA	3 cut(s)	85, 238, 391
Hpy188III	TCNNGA	6 cut(s)	123, 304, 319, 347, 593, 629
Hpy8I	GTNNAC	5 cut(s)	205, 277, 525, 617, 855
HpyCH4III	ACNGT	6 cut(s)	244, 335, 638, 680, 722, 774
HpyCH4IV	ACGT	3 cut(s)	273, 287, 527
HpyCH4V	TGCA	5 cut(s)	111, 264, 291, 311, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 438, 792
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	3 cut(s)	273, 287, 527
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	70, 100, 172
Ksp22I	TGATCA	2 cut(s)	738, 831
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
LmnI	GCTCC	3 cut(s)	438, 587, 800
LpnPI	CCDG	6 cut(s)	120, 136, 210, 252, 642, 824
Lsp1109I	GCAGC	1 cut(s)	854
MaeI	CTAG	3 cut(s)	230, 467, 570
MaeII	ACGT	3 cut(s)	273, 287, 527
MaeIII	GTNAC	3 cut(s)	383, 565, 686
MalI	GATC	6 cut(s)	450, 520, 591, 707, 740, 833
MbiI	CCGCTC	2 cut(s)	441, 539
MboI	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
MboII	GAAGA	7 cut(s)	22, 33, 49, 52, 391, 525, 700
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	3 cut(s)	208, 669, 730
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	3 cut(s)	413, 499, 797
MseI	TTAA	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	297, 438, 792
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
NlaIII	CATG	3 cut(s)	70, 100, 172
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	686
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	116, 625
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	759, 762, 844
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	337, 640
RsaNI	GTAC	2 cut(s)	336, 639
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	758, 761, 843
Sau3AI	GATC	6 cut(s)	448, 518, 589, 705, 738, 831
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	797
SetI	ASST	8 cut(s)	79, 235, 276, 290, 413, 472, 530, 847
SinI	GGWCC	1 cut(s)	470
Sse9I	AATT	3 cut(s)	208, 669, 730
SsiI	CCGC	5 cut(s)	441, 537, 758, 761, 786
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	3 cut(s)	230, 467, 570
TaaI	ACNGT	6 cut(s)	244, 335, 638, 680, 722, 774
TaiI	ACGT	3 cut(s)	276, 290, 530
TaqI	TCGA	4 cut(s)	318, 346, 369, 675
TasI	AATT	3 cut(s)	208, 669, 730
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	2 cut(s)	760, 763
TfiI	GAWTC	2 cut(s)	116, 625
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	139, 614
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	842
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	83, 108
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	139, 614
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	3 cut(s)	230, 467, 570
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.