Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007008

Physical Location & Seq

Genomic Coordinates Reverse (-)

23947794 .. 23950361

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTGGCATTCGTGAAATGCTTCTCGTTGAAGCGAGCAAAGCATCCTCGTGGATATGAGGATCCTCATGTTCTTGCATCCGAAACTCCCTTCACCGTGAATGAGATTGAGGCTTTACACGATTTATTCAAGAAGCTAAGTACATCTATTATCAATGATGGTCTAATCCATAAGGAAGAGTTTCTTCTGGCTTTGTTCAGAAACGGCAGTATGCAAAATCTATTTGCGGACAGGGTGTTTTATATGTTTGATAGGAAACGCAACGGTGTGATTGAGTTTGGAGAATTTGTTCGTTCCCTTAGCATATTCCATCCATACACTCCCGAACATGAAAAATCTGCATTTATGTTCAAGCTTTTTGACCTCCATGGAACCGGCTTCATCGAGCCCCATGAGCTGAAGAAGATGGTTGGCGCACTACTTGGTGAAACAGACTTAGAACTCTCGGAAGAATCTATTGAAGCTATCGTGGAACAGACGATGCTCGAGGTTGATACAAACAAAGATGGGAAGATTGATGAAGAAGAGTGGAAAGAGCTCGTTGCTAAGAATCCTTCAATCCTCAAGAACATGACTCTGCCTTACCTCAAGGAAGTGACTTTAGCATTTCCAAGCTTTGTACTCGACTCTGAAGTTGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

214

Amino Acids

24.65

Weight (kDa)

5.03

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	113 - 180	1.3e-10	EF-hand domain pair
EF-hand_1	PF00036	157 - 183	4.6e-06	EF hand domain
EF-hand_5	PF13202	160 - 181	3.1e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64480 AT1G64480 AT1G64480 AT1G64480
fragaria_vesca	FvH4_5g04840 FvH4_5g04840 FvH4_5g04840 FvH4_5g04840
malus_domestica	MD06G1109200.v1.1
prunus_persica	Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1
pyrus_communis	pycom06g10250
rosa_chinensis	RchiOBHm_Chr7g0194291
rosa_multiflora	Rmu_sc0000901.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261460
rosa_rugosa	Rorug07G0014900.1 Rorug07G0015000 Rorug07G0015100 Rorug07G0015200
rosa_samantha	Rh7CG146200 Rh7DG143700
rosa_wichuraiana	Rw7G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	56, 69
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	142, 621
AgsI	TTSAA	6 cut(s)	31, 130, 352, 461, 558, 638
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	6 cut(s)	136, 355, 397, 464, 538, 615
AluI	AGCT	6 cut(s)	136, 355, 397, 464, 538, 615
Alw21I	GWGCWC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	56, 69
Ama87I	CYCGRG	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	3 cut(s)	20, 180, 288
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	85, 437
AvaI	CYCGRG	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	390, 540
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	540
BccI	CCATC	4 cut(s)	152, 318, 400, 500
BceAI	ACGGC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	63, 373
BmsI	GCATC	3 cut(s)	52, 86, 471
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	2 cut(s)	548, 572
BsaJI	CCNNGG	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse118I	RCCGGY	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	43, 77, 310
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	390, 540
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	63, 373
BspPI	GGATC	2 cut(s)	56, 69
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	97, 266
Bst6I	CTCTTC	2 cut(s)	171, 519
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	137, 299, 436, 546
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	43, 77, 310
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 394
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	43, 77, 310
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	141, 620
CviAII	CATG	5 cut(s)	68, 329, 368, 392, 571
CviQI	GTAC	2 cut(s)	141, 620
DdeI	CTNAG	4 cut(s)	137, 299, 436, 546
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	171, 519
EarI	CTCTTC	2 cut(s)	171, 519
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	390, 540
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	390, 540
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	5 cut(s)	71, 332, 371, 395, 574
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	5 cut(s)	67, 328, 367, 391, 570
FokI	GGATG	3 cut(s)	30, 64, 297
FriOI	GRGCYC	2 cut(s)	390, 540
FspBI	CTAG	1 cut(s)	643
GlaI	GCGC	1 cut(s)	415
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	5 cut(s)	71, 332, 371, 395, 574
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	2 cut(s)	353, 613
HinfI	GANTC	4 cut(s)	452, 550, 574, 626
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	85, 437
Hpy188I	TCNGA	4 cut(s)	82, 200, 448, 631
Hpy188III	TCNNGA	4 cut(s)	13, 130, 323, 565
HpyAV	CCTTC	2 cut(s)	100, 564
HpyCH4III	ACNGT	2 cut(s)	97, 266
HpyCH4V	TGCA	3 cut(s)	77, 214, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 394
HpyF3I	CTNAG	4 cut(s)	137, 299, 436, 546
Hsp92II	CATG	5 cut(s)	71, 332, 371, 395, 574
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	3 cut(s)	173, 217, 388
LweI	GCATC	3 cut(s)	52, 86, 471
MaeI	CTAG	1 cut(s)	643
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	8 cut(s)	176, 188, 412, 415, 461, 523, 533, 536
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	390, 540
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	568, 620
MnlI	CCTC	8 cut(s)	52, 57, 75, 103, 374, 481, 572, 596
MroXI	GAANNNNTTC	3 cut(s)	20, 180, 288
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	40, 394
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	5 cut(s)	71, 332, 371, 395, 574
NlaIV	GGNNCC	2 cut(s)	63, 373
NmuCI	GTSAC	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	485
PctI	GAATGC	1 cut(s)	8
PdmI	GAANNNNTTC	3 cut(s)	20, 180, 288
PfeI	GAWTC	2 cut(s)	452, 550
PleI	GAGTC	2 cut(s)	568, 620
PpsI	GAGTC	2 cut(s)	568, 620
Psp124BI	GAGCTC	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	63, 373
PspXI	VCTCGAGB	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	142, 621
RsaNI	GTAC	2 cut(s)	141, 620
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	540
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	568, 620
SduI	GDGCHC	2 cut(s)	390, 540
SetI	ASST	9 cut(s)	138, 357, 366, 399, 466, 492, 540, 588, 617
SfaNI	GCATC	3 cut(s)	52, 86, 471
Sfr274I	CTCGAG	1 cut(s)	485
SlaI	CTCGAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	3 cut(s)	485, 563, 587
SmoI	CTYRAG	3 cut(s)	485, 563, 587
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	643
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	97, 266
TaqI	TCGA	3 cut(s)	384, 486, 624
TasI	AATT	1 cut(s)	284
TatI	WGTACW	2 cut(s)	140, 619
TfiI	GAWTC	2 cut(s)	452, 550
TseFI	GTSAC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	345, 370, 534
XapI	RAATTY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	485
XmnI	GAANNNNTTC	3 cut(s)	20, 180, 288
XspI	CTAG	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.