Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007008

Physical Location & Seq

Genomic Coordinates Forward (+)

12249712 .. 12253048

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCTCCTTTCATGAGCTGCTTTTGCTTCAAGAGTTCCAAAGTTGATAGACATAGGACTGGATTTGAGGAGTCTATTATCCTTGCTTCAGAAACTGCTTTTACCGTAAATGAAGTGGAGGCCTTGTATGATCTGTTTAAGAAAATAAGCAATTCCATAATTAAAGATGGCCTTCTACACAAGGAAGAATTCCAACTTGCACTATTTCAAAGCAGCAGTAAGCAGAATCTTTTTGCAGACAGGGTATTTGATTTGTTTGATGTCAAGCGTAATGGGGTAATTGAATTTGGAGAATTCGTTCGGTCATTGAGCATTTTTCATCCAAATGCTTCTGAAGCAGACAAAATTTCATTTGCATTTAGATTGTATGATCTACGACAGACGGGCTACATTGAGCGTGATGAGGTGAAGGAGATGGTGGTAGCCCTTTTAGGAGAATCAGAGCTGGTACTTACCAATGATGTTATCGAATCAATCGTTGACAAGACAATGATGGAGGCAGATTTAAAAGCAGATGGAAAAATTGATCAAGAAGAGTGGAAGGAATATGTGGCAAAGCATCCATCTCTTATAAAGAATATGACTCTTCCATATCTAAAGGACATAACAATAGCATTTCCCAGCTTTGTACTCAACACCGGAGTTCCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

217

Amino Acids

24.81

Weight (kDa)

4.92

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	115 - 183	5.9e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64480 AT1G64480 AT1G64480 AT1G64480
fragaria_vesca	FvH4_5g04840 FvH4_5g04840 FvH4_5g04840 FvH4_5g04840
malus_domestica	MD06G1109200.v1.1
prunus_persica	Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1
pyrus_communis	pycom06g10250
rosa_chinensis	RchiOBHm_Chr7g0194291
rosa_multiflora	Rmu_sc0000901.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261460
rosa_rugosa	Rorug07G0014900.1 Rorug07G0015000 Rorug07G0015100 Rorug07G0015200
rosa_samantha	Rh7CG146200 Rh7DG143700
rosa_wichuraiana	Rw7G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AcsI	RAATTY	4 cut(s)	188, 284, 293, 345
AcuI	CTGAAG	2 cut(s)	72, 354
AfaI	GTAC	2 cut(s)	450, 630
AgsI	TTSAA	3 cut(s)	31, 209, 284
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	18, 445, 624
AluI	AGCT	3 cut(s)	18, 445, 624
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	120, 169
ApeKI	GCWGC	2 cut(s)	18, 213
ApoI	RAATTY	4 cut(s)	188, 284, 293, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	5, 225
BccI	CCATC	5 cut(s)	161, 409, 487, 509, 571
BclI	TGATCA	1 cut(s)	526
BisI	GCNGC	2 cut(s)	19, 214
BlsI	GCNGC	2 cut(s)	20, 215
BmsI	GCATC	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	638
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 282, 312
Bse1I	ACTGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	319, 559
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	5, 225
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	2 cut(s)	122, 171
BsiSI	CCGG	1 cut(s)	639
BsnI	GGCC	2 cut(s)	122, 171
Bsp143I	GATC	3 cut(s)	130, 370, 526
BspANI	GGCC	2 cut(s)	122, 171
BspHI	TCATGA	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	130, 370, 526
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	528, 591
BstF5I	GGATG	2 cut(s)	319, 559
BstKTI	GATC	3 cut(s)	133, 373, 529
BstMBI	GATC	3 cut(s)	130, 370, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 335
BstV1I	GCAGC	2 cut(s)	5, 225
BsuRI	GGCC	2 cut(s)	122, 171
BtsCI	GGATG	2 cut(s)	319, 559
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	449, 629
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	7 cut(s)	18, 122, 171, 387, 425, 445, 624
CviKI_1	RGCY	7 cut(s)	18, 122, 171, 387, 425, 445, 624
CviQI	GTAC	2 cut(s)	449, 629
DpnI	GATC	3 cut(s)	132, 372, 528
DpnII	GATC	3 cut(s)	130, 370, 526
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	528, 591
EarI	CTCTTC	2 cut(s)	528, 591
Eco147I	AGGCCT	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	72, 354
EcoRI	GAATTC	2 cut(s)	188, 293
FaeI	CATG	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	19, 214
FokI	GGATG	2 cut(s)	306, 546
Fsp4HI	GCNGC	2 cut(s)	19, 214
GluI	GCNGC	2 cut(s)	19, 214
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	122, 171
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	5 cut(s)	71, 226, 437, 470, 583
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	91, 334, 442
Hpy188III	TCNNGA	4 cut(s)	13, 31, 530, 647
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	182, 403, 535
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	200, 236, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 335
Hsp92II	CATG	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	130, 370, 526
LpnPI	CCDG	4 cut(s)	45, 226, 431, 634
Lsp1109I	GCAGC	2 cut(s)	5, 225
LweI	GCATC	1 cut(s)	568
MalI	GATC	3 cut(s)	132, 372, 528
MboI	GATC	3 cut(s)	130, 370, 526
MboII	GAAGA	3 cut(s)	197, 545, 578
MluCI	AATT	8 cut(s)	151, 159, 188, 279, 284, 293, 345, 522
MlyI	GAGTC	2 cut(s)	80, 577
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	15, 61, 112, 397, 490
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	3 cut(s)	138, 162, 506
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	24, 335
NdeII	GATC	3 cut(s)	130, 370, 526
NlaIII	CATG	1 cut(s)	16
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	226, 437, 470
PkrI	GCNGC	2 cut(s)	20, 215
PleI	GAGTC	2 cut(s)	79, 577
PpsI	GAGTC	2 cut(s)	79, 577
PsiI	TTATAA	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	450, 630
RsaNI	GTAC	2 cut(s)	449, 629
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	138, 162, 506
SatI	GCNGC	2 cut(s)	19, 214
Sau3AI	GATC	3 cut(s)	130, 370, 526
SchI	GAGTC	2 cut(s)	80, 577
SetI	ASST	4 cut(s)	20, 408, 447, 626
SfaNI	GCATC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	8 cut(s)	151, 159, 188, 279, 284, 293, 345, 522
SseBI	AGGCCT	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	468
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	8 cut(s)	151, 159, 188, 279, 284, 293, 345, 522
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	3 cut(s)	226, 437, 470
Tru1I	TTAA	3 cut(s)	138, 162, 506
Tru9I	TTAA	3 cut(s)	138, 162, 506
TseI	GCWGC	2 cut(s)	18, 213
TspDTI	ATGAA	3 cut(s)	126, 308, 339
XapI	RAATTY	4 cut(s)	188, 284, 293, 345
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.