Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007008

Physical Location & Seq

Genomic Coordinates Reverse (-)

15622124 .. 15624627

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTGCACTGCTTTTGCTTCAAGAGTTCGAGAGTTGATAGACTTGGACATGAGGACCCTAGAATTCTTGCTTCAGAAACTGCTTTTACGGTAAATGAAGTGGAGGCCTTGTATGAACTGTTTAAGAAACTATGCAGTTCCATAATTAAAGATGGTCTTCTACACAAGGAAGAATTCCAACTTGCACTCTTTCAAAGCCGCAGTAAGCAGAACCTTTTTGCAGATCGGGTTTTTGACTTGTTTGATGTCAAGCACAATGGGGTCATTGAGTTTGGAGAATTTGTTCGGTCATTAAGCATTTTTCATCCACGTTCTTCCGAAGCAGACAAAATCTCATTCGCATTTAGATTGTATGATCTACGACAGACTGGTTACATTGAGCGTTATGAGTTGAAGCAGATGGTGTCAGCCCTTTTGAATGAATCAGATCTGGACCTTTCCGATGATGTTATTGAATCAATTGTCGAGAAGACAATAACGGAGGCAGATTTAAACGGAGATGGCAGAATTGATCAAGAAGAGTGGAAGGAATTTGTAGCAAAGCATCCATCTCTGATAAAGAATATGACTCTTCCATATCTAATGGACATTACCGTACAATTTCCCAGCTTCGTGCTCAACACTGAAGTTCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.59

Weight (kDa)

4.91

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64480 AT1G64480 AT1G64480 AT1G64480
fragaria_vesca	FvH4_5g04840 FvH4_5g04840 FvH4_5g04840 FvH4_5g04840
malus_domestica	MD06G1109200.v1.1
prunus_persica	Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1
pyrus_communis	pycom06g10250
rosa_chinensis	RchiOBHm_Chr7g0194291
rosa_multiflora	Rmu_sc0000901.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261460
rosa_rugosa	Rorug07G0014900.1 Rorug07G0015000 Rorug07G0015100 Rorug07G0015200
rosa_samantha	Rh7CG146200 Rh7DG143700
rosa_wichuraiana	Rw7G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	199
AcsI	RAATTY	4 cut(s)	63, 173, 278, 530
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	597
AgsI	TTSAA	6 cut(s)	22, 194, 394, 418, 455, 632
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	1 cut(s)	609
AluI	AGCT	1 cut(s)	609
Alw21I	GWGCWC	1 cut(s)	618
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	4 cut(s)	63, 173, 278, 530
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	55, 433
AvaII	GGWCC	2 cut(s)	55, 433
BbsI	GAAGAC	2 cut(s)	149, 476
Bbv12I	GWGCWC	1 cut(s)	618
BccI	CCATC	4 cut(s)	146, 394, 494, 556
BclI	TGATCA	1 cut(s)	511
BfaI	CTAG	2 cut(s)	60, 637
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	5, 199
BlsI	GCNGC	2 cut(s)	6, 200
Bme18I	GGWCC	2 cut(s)	55, 433
BmgT120I	GGNCC	2 cut(s)	55, 433
BmiI	GGNNCC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	553
BpiI	GAAGAC	2 cut(s)	149, 476
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 267, 297
Bse1I	ACTGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	304, 544
BseNI	ACTGG	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	618
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	223, 355, 427, 511
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	4 cut(s)	223, 355, 427, 511
Bst4CI	ACNGT	3 cut(s)	91, 120, 595
Bst6I	CTCTTC	2 cut(s)	513, 576
BstF5I	GGATG	2 cut(s)	304, 544
BstKTI	GATC	4 cut(s)	226, 358, 430, 514
BstMBI	GATC	4 cut(s)	223, 355, 427, 511
BstV2I	GAAGAC	2 cut(s)	149, 476
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	304, 544
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	7, 621
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	55, 433
Csp6I	GTAC	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	4 cut(s)	107, 198, 410, 609
CviKI_1	RGCY	4 cut(s)	107, 198, 410, 609
CviQI	GTAC	1 cut(s)	596
DpnI	GATC	4 cut(s)	225, 357, 429, 513
DpnII	GATC	4 cut(s)	223, 355, 427, 511
DraI	TTTAAA	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	513, 576
EarI	CTCTTC	2 cut(s)	513, 576
Eco147I	AGGCCT	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	55, 433
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRI	GAATTC	2 cut(s)	63, 173
FaeI	CATG	1 cut(s)	53
FaiI	YATR	8 cut(s)	51, 114, 133, 143, 354, 387, 566, 577
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	5, 199
FokI	GGATG	2 cut(s)	291, 531
Fsp4HI	GCNGC	2 cut(s)	5, 199
FspBI	CTAG	2 cut(s)	60, 637
GluI	GCNGC	2 cut(s)	5, 199
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	3 cut(s)	422, 455, 568
Hpy188I	TCNGA	5 cut(s)	76, 319, 427, 442, 555
Hpy188III	TCNNGA	6 cut(s)	22, 30, 431, 466, 515, 632
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	91, 120, 595
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	4 cut(s)	7, 135, 185, 221
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	223, 355, 427, 511
LpnPI	CCDG	3 cut(s)	354, 416, 619
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	60, 637
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	225, 357, 429, 513
MboI	GATC	4 cut(s)	223, 355, 427, 511
MboII	GAAGA	6 cut(s)	149, 182, 306, 481, 530, 563
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	8 cut(s)	63, 144, 173, 278, 459, 507, 530, 599
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	46, 97, 475
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	4 cut(s)	123, 147, 293, 491
MunI	CAATTG	1 cut(s)	459
NdeII	GATC	4 cut(s)	223, 355, 427, 511
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	422, 455
PkrI	GCNGC	2 cut(s)	6, 200
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	55, 433
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SaqAI	TTAA	4 cut(s)	123, 147, 293, 491
SatI	GCNGC	2 cut(s)	5, 199
Sau3AI	GATC	4 cut(s)	223, 355, 427, 511
Sau96I	GGNCC	2 cut(s)	55, 433
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	4 cut(s)	216, 313, 438, 611
SfaNI	GCATC	1 cut(s)	553
SinI	GGWCC	2 cut(s)	55, 433
Sse9I	AATT	8 cut(s)	63, 144, 173, 278, 459, 507, 530, 599
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	60, 637
StuI	AGGCCT	1 cut(s)	107
TaaI	ACNGT	3 cut(s)	91, 120, 595
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	29, 465
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	8 cut(s)	63, 144, 173, 278, 459, 507, 530, 599
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	422, 455
Tru1I	TTAA	4 cut(s)	123, 147, 293, 491
Tru9I	TTAA	4 cut(s)	123, 147, 293, 491
TscAI	CASTG	2 cut(s)	14, 628
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	111, 129, 293, 435
TspGWI	ACGGA	2 cut(s)	494, 510
TspRI	CASTG	2 cut(s)	14, 628
VpaK11BI	GGWCC	2 cut(s)	55, 433
XapI	RAATTY	4 cut(s)	63, 173, 278, 530
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	60, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.