Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007008

Physical Location & Seq

Genomic Coordinates Reverse (-)

2886255 .. 2889563

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04840.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCTCCTTTCATGAGCTGCTTTTGCTTCAAGAGTTCAAGAGTTTATAGACATAGTCCTGGGTATGAGAAGCCCACTATTCTTGCTTCAGAAACTGCTTTTACCGTAAATGAAGTGGAGGCCTTATATGATCTGTATAAGAAAATAAGCAATTCCATCATTAAAGATGGTCTCCTACACAAGGAAGAATTCCAACTTGCACTATTTCAAAGCAGCAGTAAGCAGAATCTCTTTGCAGACAGGGTATTTGATTTGTTTGATCTCAAGCGTAATGGGGTAATTGAGTTTGGAGAATTTGTTAGATCATTGAGCATTTTTCACCCAAATGCTTCTGAAGCAGACAAAATTTCATTTGCATTTAGATTGTACGATCTACGACAGACGGGCTACATTGAGCGTGAAGAGGTAAAGGACATGTTGCTAGCCCTTTTGAGTGAATCAGAGCTGGCACTTACCGATGATGTTATTGAATCAATTGTTGACAAGACAATGATGGAGGCAGATCTAAAGGGAGATGGAAAAATTGATCAAGAAGAGTGGAAAGAATATGTGGCAAAACATCCATCTCTTATAAAGAACATGACTCTTCCATATCTAAAGGACATAACAATAGCATTTCCCAGCTTTGTGCTCAACACCGAAGTTCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

218

Amino Acids

24.98

Weight (kDa)

4.92

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	115 - 183	1.6e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64480 AT1G64480 AT1G64480 AT1G64480
fragaria_vesca	FvH4_5g04840 FvH4_5g04840 FvH4_5g04840 FvH4_5g04840
malus_domestica	MD06G1109200.v1.1
prunus_persica	Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1 Prupe.5G122200_v2.0.a1
pyrus_communis	pycom06g10250
rosa_chinensis	RchiOBHm_Chr7g0194291
rosa_multiflora	Rmu_sc0000901.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261460
rosa_rugosa	Rorug07G0014900.1 Rorug07G0015000 Rorug07G0015100 Rorug07G0015200
rosa_samantha	Rh7CG146200 Rh7DG143700
rosa_wichuraiana	Rw7G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AcsI	RAATTY	3 cut(s)	188, 293, 345
AcuI	CTGAAG	2 cut(s)	72, 354
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	5 cut(s)	31, 39, 209, 470, 647
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	18, 445, 624
AluI	AGCT	3 cut(s)	18, 445, 624
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	18, 213
ApoI	RAATTY	3 cut(s)	188, 293, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	5, 225
BccI	CCATC	5 cut(s)	161, 164, 487, 509, 571
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	2 cut(s)	19, 214
BlsI	GCNGC	2 cut(s)	20, 215
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	5, 225
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
BspANI	GGCC	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	12
BspOI	GCTAGC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	3 cut(s)	396, 528, 591
BstC8I	GCNNGC	2 cut(s)	423, 447
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	6 cut(s)	133, 262, 305, 373, 505, 529
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 335
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	5, 225
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	423, 447
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	367
CspCI	CAANNNNNGTGG	4 cut(s)	64, 99, 518, 553
CviAII	CATG	3 cut(s)	13, 415, 580
CviJI	RGCY	7 cut(s)	18, 73, 122, 387, 425, 445, 624
CviKI_1	RGCY	7 cut(s)	18, 73, 122, 387, 425, 445, 624
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	6 cut(s)	132, 261, 304, 372, 504, 528
DpnII	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
Eam1104I	CTCTTC	3 cut(s)	396, 528, 591
EarI	CTCTTC	3 cut(s)	396, 528, 591
Eco147I	AGGCCT	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	72, 354
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	16, 418, 583
FatI	CATG	3 cut(s)	12, 414, 579
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	19, 214
FokI	GGATG	1 cut(s)	546
Fsp4HI	GCNGC	2 cut(s)	19, 214
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	2 cut(s)	19, 214
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	16, 418, 583
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	226, 437, 470, 583
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	91, 334, 442
Hpy188III	TCNNGA	5 cut(s)	13, 31, 39, 530, 647
Hpy8I	GTNNAC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	200, 236, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 335
Hsp92II	CATG	3 cut(s)	16, 418, 583
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
LpnPI	CCDG	5 cut(s)	45, 72, 226, 431, 634
Lsp1109I	GCAGC	2 cut(s)	5, 225
MaeI	CTAG	1 cut(s)	422
MalI	GATC	6 cut(s)	132, 261, 304, 372, 504, 528
MboI	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
MboII	GAAGA	4 cut(s)	197, 413, 545, 578
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	7 cut(s)	151, 188, 279, 293, 345, 474, 522
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	4 cut(s)	15, 112, 397, 490
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	24, 335
NdeII	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	16, 418, 583
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	226, 437, 470
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	20, 215
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PscI	ACATGT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	19, 214
Sau3AI	GATC	6 cut(s)	130, 259, 302, 370, 502, 526
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	4 cut(s)	20, 408, 447, 626
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	7 cut(s)	151, 188, 279, 293, 345, 474, 522
SseBI	AGGCCT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	7 cut(s)	151, 188, 279, 293, 345, 474, 522
TfiI	GAWTC	3 cut(s)	226, 437, 470
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	2 cut(s)	18, 213
TspDTI	ATGAA	2 cut(s)	126, 339
Tth111I	GACNNNGTC	1 cut(s)	54
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	188, 293, 345
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.