AT1G65560

N-terminal domain of oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017133
Physical Location & Seq
Reverse (-)
24371387 .. 24373823
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65560.2

Sequence Viewer

Length: 1053 bp
ATGGGAGAAGTTTCAGTGGTGGAGAACAAGAAAGTGATACTAAAGAATTATGTAGATGGTATTCCTACAGAAACAGACATGGAAGTGAAACTCGGAGAAACAATTGAGCTAAAAGCACCAAAAGGATCTTCTTGTTTCCTCGTCAAAAATCTATACTTGTCTTGTGATCCTTACATGAGAGGTCGTATGCGTGATTTTCACGGTTCCTATCTCCCGCCTTTTGTTCCTGGCCAACGTATCGAAGGGTTTGGTTTAGCAAGAGTGATAGATTCTGATGATACTAATTATAAGCCCGGCGATATAGTCTCTGGTATCATTGGTTGGGAAGAATACAGTTTGCTACGTAGTTCAGATAACCTACAGTTGAGAAATATTCAGTTAGACGACGACATTCCGCTTTCTTATCATCTCGGACTTCTCGGGATGGCTGGATTTACAGCATATGCAGGGTTTAATGAGATATGTTGTCCTAAGAAAGGGGACAGTGTTTTTGTCTCTGCAGCATGTGGAGCAGTTGGACAACTTGTTGGTCAGCTAGCTAAGTTGCACGGCTGCTATGTTGTTGGTAGCGCCGGTAGTAAGCAAAAGGTTGAGATCCTTAAAAACGAGCTTGGATATGATGAAGCCTTTAACTACAAGGAAGAGGCTGATCTTGATACTGCTTTGAAGAGGTACTTCCCGGAGGGGATAGATATCTACTTCGATAACGTGGGTGGATCCATGCTTGATGCAGCGCTCCTCAACATGAAGGTACGTGGAAGAATCGCGCTCTGTGGAATGGTGTCTTTGCAAAGCCTCTCAACTTCATCACAAGGAATCAAGAACCTATACAGCGCTATCTACAAACGTTTAAGGTTAGAAGGGTTCTTGCAGAGCGATTACCTTCATATCTTCCCACAGTTTCTTGAAAATGTCAAGAGATATTACAAAGAAGGCAAGATTGTCTACGTCGAAGATATATCTGAAGGCCTCGACCTCGCTCCCGCTGCACTTGTTGGGCTGTTTTCCGGGAAAAATATCGGTAAACAGGTTGTTCGGGTTGCTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

350

Amino Acids

38.63

Weight (kDa)

5.59

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 95 - 229 6.7e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 128 - 269 1.8e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_6g00020
malus_domestica MD12G1260900.v1.1
prunus_persica Prupe.6G365900_v2.0.a1
pyrus_communis pycom12g24290
rosa_chinensis RchiOBHm_Chr3g0447341
rosa_laevigata RLG00000026009
rosa_roxburghii Rroxscaffold_6G00425520
rosa_rugosa Rorug02G0600100
rosa_samantha Rh3AG000400 Rh3CG000200 Rh3DG000400
rosa_wichuraiana Rw3G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccI GTMKAC 1 cut(s) 945
AccII CGCG 1 cut(s) 767
AciI CCGC 3 cut(s) 215, 395, 984
AclI AACGTT 1 cut(s) 847
AclWI GGATC 5 cut(s) 133, 161, 589, 711, 724
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 984
AfaI GTAC 2 cut(s) 674, 753
AfeI AGCGCT 2 cut(s) 735, 835
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 667, 908
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AluBI AGCT 4 cut(s) 109, 535, 539, 610
AluI AGCT 4 cut(s) 109, 535, 539, 610
Alw26I GTCTC 2 cut(s) 310, 499
AlwI GGATC 5 cut(s) 133, 161, 589, 711, 724
Ama87I CYCGRG 1 cut(s) 419
Aor51HI AGCGCT 2 cut(s) 735, 835
AoxI GGCC 2 cut(s) 229, 967
ApeKI GCWGC 4 cut(s) 500, 552, 731, 986
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 4 cut(s) 572, 736, 769, 836
AsuC2I CCSGG 3 cut(s) 294, 680, 1009
AsuNHI GCTAGC 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 419
BalI TGGCCA 1 cut(s) 231
BamHI GGATCC 1 cut(s) 716
BbvI GCAGC 4 cut(s) 512, 539, 743, 973
BccI CCATC 2 cut(s) 50, 418
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 3 cut(s) 294, 680, 1009
BcoDI GTCTC 2 cut(s) 310, 499
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 3 cut(s) 66, 359, 498
BfoI RGCGCY 3 cut(s) 573, 737, 837
BisI GCNGC 4 cut(s) 501, 553, 732, 987
BlsI GCNGC 4 cut(s) 502, 554, 733, 988
Bme1390I CCNGG 4 cut(s) 228, 294, 680, 1009
BmeT110I CYCGRG 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 205, 718
BmrFI CCNGG 4 cut(s) 228, 294, 680, 1009
BmsI GCATC 1 cut(s) 718
BmtI GCTAGC 1 cut(s) 539
BpuMI CCSGG 3 cut(s) 294, 680, 1009
BsaAI YACGTR 2 cut(s) 344, 755
BsaBI GATNNNNATC 1 cut(s) 692
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse118I RCCGGY 1 cut(s) 572
Bse8I GATNNNNATC 1 cut(s) 692
BseBI CCWGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 429
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 728
BseXI GCAGC 4 cut(s) 512, 539, 743, 973
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 2 cut(s) 231, 969
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 4 cut(s) 294, 573, 680, 1008
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 310, 499
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 2 cut(s) 231, 969
BsoBI CYCGRG 1 cut(s) 419
Bsp143I GATC 5 cut(s) 125, 166, 594, 649, 716
BspACI CCGC 3 cut(s) 215, 395, 984
BspANI GGCC 2 cut(s) 231, 969
BspFNI CGCG 1 cut(s) 767
BspLI GGNNCC 2 cut(s) 205, 718
BspMAI CTGCAG 1 cut(s) 502
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 5 cut(s) 133, 161, 589, 711, 724
BsrFI RCCGGY 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 572
BssMI GATC 5 cut(s) 125, 166, 594, 649, 716
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 5 cut(s) 203, 335, 363, 485, 900
Bst6I CTCTTC 2 cut(s) 636, 662
BstBAI YACGTR 2 cut(s) 344, 755
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 471, 540
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 767
BstH2I RGCGCY 3 cut(s) 573, 737, 837
BstHHI GCGC 4 cut(s) 572, 736, 769, 836
BstKTI GATC 5 cut(s) 128, 169, 597, 652, 719
BstMAI GTCTC 2 cut(s) 310, 499
BstMBI GATC 5 cut(s) 125, 166, 594, 649, 716
BstMWI GCNNNNNNNGC 2 cut(s) 509, 986
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 507
BstSCI CCNGG 4 cut(s) 226, 292, 678, 1007
BstSFI CTRYAG 3 cut(s) 66, 359, 498
BstSNI TACGTA 1 cut(s) 344
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 4 cut(s) 512, 539, 743, 973
BstX2I RGATCY 3 cut(s) 125, 594, 716
BstYI RGATCY 3 cut(s) 125, 594, 716
BsuRI GGCC 2 cut(s) 231, 969
BtsCI GGATG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 21, 490
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 4 cut(s) 572, 736, 769, 836
Cfr10I RCCGGY 1 cut(s) 572
Csp6I GTAC 2 cut(s) 673, 752
CviAII CATG 5 cut(s) 79, 175, 504, 721, 745
CviQI GTAC 2 cut(s) 673, 752
DdeI CTNAG 2 cut(s) 471, 540
DpnI GATC 5 cut(s) 127, 168, 596, 651, 718
DpnII GATC 5 cut(s) 125, 166, 594, 649, 716
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 636, 662
EarI CTCTTC 2 cut(s) 636, 662
Eco105I TACGTA 1 cut(s) 344
Eco147I AGGCCT 1 cut(s) 969
Eco32I GATATC 1 cut(s) 694
Eco47III AGCGCT 2 cut(s) 735, 835
Eco57I CTGAAG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 226
EcoRV GATATC 1 cut(s) 694
FaeI CATG 5 cut(s) 82, 178, 507, 724, 748
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 494
FatI CATG 5 cut(s) 78, 174, 503, 720, 744
FauI CCCGC 2 cut(s) 222, 991
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 501, 553, 732, 987
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 4 cut(s) 501, 553, 732, 987
FspBI CTAG 1 cut(s) 536
GlaI GCGC 4 cut(s) 571, 735, 768, 835
GluI GCNGC 4 cut(s) 501, 553, 732, 987
HaeII RGCGCY 3 cut(s) 573, 737, 837
HaeIII GGCC 2 cut(s) 231, 969
HapII CCGG 4 cut(s) 294, 573, 680, 1008
HhaI GCGC 4 cut(s) 572, 736, 769, 836
Hin1II CATG 5 cut(s) 82, 178, 507, 724, 748
Hin6I GCGC 4 cut(s) 570, 734, 767, 834
HinP1I GCGC 4 cut(s) 570, 734, 767, 834
HinfI GANTC 3 cut(s) 269, 762, 816
HpaII CCGG 4 cut(s) 294, 573, 680, 1008
Hpy166II GTNNAC 2 cut(s) 946, 1025
Hpy188I TCNGA 5 cut(s) 95, 274, 352, 413, 964
Hpy188III TCNNGA 5 cut(s) 421, 653, 820, 905, 916
Hpy8I GTNNAC 2 cut(s) 946, 1025
Hpy99I CGWCG 2 cut(s) 389, 953
HpyAV CCTTC 6 cut(s) 236, 742, 854, 893, 926, 959
HpyCH4III ACNGT 5 cut(s) 203, 335, 363, 485, 900
HpyCH4IV ACGT 6 cut(s) 235, 343, 708, 754, 847, 948
HpyCH4V TGCA 7 cut(s) 446, 500, 547, 731, 790, 871, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 986
HpyF3I CTNAG 2 cut(s) 471, 540
HpySE526I ACGT 6 cut(s) 235, 343, 708, 754, 847, 948
Hsp92II CATG 5 cut(s) 82, 178, 507, 724, 748
HspAI GCGC 4 cut(s) 570, 734, 767, 834
Kzo9I GATC 5 cut(s) 125, 166, 594, 649, 716
LmnI GCTCC 3 cut(s) 509, 741, 985
Lsp1109I GCAGC 4 cut(s) 512, 539, 743, 973
LweI GCATC 1 cut(s) 718
MaeI CTAG 1 cut(s) 536
MaeII ACGT 6 cut(s) 235, 343, 708, 754, 847, 948
MalI GATC 5 cut(s) 127, 168, 596, 651, 718
MboI GATC 5 cut(s) 125, 166, 594, 649, 716
MboII GAAGA 7 cut(s) 120, 338, 653, 679, 771, 883, 965
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 3 cut(s) 125, 594, 716
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 3 cut(s) 46, 102, 283
MluNI TGGCCA 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 9 cut(s) 149, 173, 637, 663, 676, 749, 806, 980, 986
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 4 cut(s) 453, 600, 630, 851
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 4 cut(s) 294, 573, 680, 1008
MspR9I CCNGG 4 cut(s) 228, 294, 680, 1009
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 2 cut(s) 509, 986
NciI CCSGG 3 cut(s) 294, 680, 1009
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 125, 166, 594, 649, 716
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 5 cut(s) 82, 178, 507, 724, 748
NlaIV GGNNCC 2 cut(s) 205, 718
NspI RCATGY 1 cut(s) 507
PceI AGGCCT 1 cut(s) 969
PfeI GAWTC 3 cut(s) 269, 762, 816
PfoI TCCNGGA 2 cut(s) 678, 1007
PkrI GCNGC 4 cut(s) 502, 554, 733, 988
Ppu21I YACGTR 2 cut(s) 344, 755
PsiI TTATAA 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 205, 718
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 3 cut(s) 125, 594, 716
RsaI GTAC 2 cut(s) 674, 753
RsaNI GTAC 2 cut(s) 673, 752
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 4 cut(s) 453, 600, 630, 851
SatI GCNGC 4 cut(s) 501, 553, 732, 987
Sau3AI GATC 5 cut(s) 125, 166, 594, 649, 716
ScrFI CCNGG 4 cut(s) 228, 294, 680, 1009
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 3 cut(s) 66, 359, 498
SmiMI CAYNNNNRTG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 344
Sse9I AATT 3 cut(s) 46, 102, 283
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 3 cut(s) 215, 395, 984
SspI AATATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 536
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 4 cut(s) 226, 292, 678, 1007
TaaI ACNGT 5 cut(s) 203, 335, 363, 485, 900
TaiI ACGT 6 cut(s) 238, 346, 711, 757, 850, 951
TaqI TCGA 4 cut(s) 240, 702, 951, 972
TasI AATT 3 cut(s) 46, 102, 283
TfiI GAWTC 3 cut(s) 269, 762, 816
Tru1I TTAA 4 cut(s) 453, 600, 630, 851
Tru9I TTAA 4 cut(s) 453, 600, 630, 851
TscAI CASTG 2 cut(s) 21, 490
TseI GCWGC 4 cut(s) 500, 552, 731, 986
TspDTI ATGAA 4 cut(s) 636, 761, 795, 875
TspRI CASTG 2 cut(s) 21, 490
XagI CCTNNNNNAGG 1 cut(s) 474
XceI RCATGY 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 945
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.