FvH4_6g00020

2-alkenal reductase (NADP(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017133
Physical Location & Seq
Reverse (-)
18120 .. 21985
3866 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00020.t1

Sequence Viewer

Length: 1032 bp
ATGGAAGCTGAGAACAAACAAGTGATCTTCAAGGGGTTCATAGAGGGCACCCCAAAGGAGACAGACTTACAAGTGATGCCTGGAATCAGTATCAAGCTCAAGGCTCCTAAAGGCTCTGGAGCTTTCCTGGTCAAGAATCTCTACCTCTCTTGTGACCCTTATATGAGGGGACGTATGCGTGATTTTCGTGATTCCTACATTCCCCCGTTCGTTCCTGGCCAGCCAATTGAAGGTTTCGGTGTCTCCGAAGTTGTGGATTCTGATAATCCGAATTTCAAGCCTGGCGACTTGGTCTCTGGCATAACTGGATGGGAAGAATACAGCTTAATTCATAGAACTGAGCAGTTGAGAAAAATTAAGCAAGATGACATCCCTCTATCTTTCCATTTGGGTCTTCTTGGTATGCCAGGTTTTACTGCATATGCAGGATTCAATGAGGTCTGCTCTCCTAAGAAAGGGGAATATGTTTTAGTTTCTGCTGCTTCTGGAGCCGTAGGTCAGCTTGTTGGTCAGCTTGCTAAGTTGCTTGGCTGTTACGTAGTTGGAAGTTCGGGTTCAAGCCAAAAAGTTGATCTTCTAAGGAATAAGCTTGGTTTTGATGATGCTTTTAACTACAAGGAAGAGCCAGACCTTGATGCAGCTCTGAAAAGGTACTTTCCTCAAGGCATTGACATTTACTTTGATAATGTGGGAGGGGAAATGCTTGATGCAGCGCTTGTCAACATGAGAATTCATGGTCGAATTTCTGTGTGTGGTATGGTGTCTGAACAAAATCTCTCTGATCCTCGAGGTATCCACAATTTATACAATCTCATAACAAAGCGCATCAGGATGCAAGGATTCCTGCAAAGTGATTACTTGAATTTATACCCGCGTTTCTTGGAAGATGTTATTAGCCTCTATAACCAAGGGAAGATTGTTTACATTGAAGACATGAATGAAGGCTTGGAAAGTGCTCCATCTGCTTTTGTTGGGTTATTTTCGGGAAGAAATGTTGGAAAGCAAGTAATTCGTGTAGCAAAATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

344

Amino Acids

38.05

Weight (kDa)

5.73

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 6 - 116 9.4e-26 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 164 - 287 2.2e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 197 - 337 1.1e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_6g00020
malus_domestica MD12G1260900.v1.1
prunus_persica Prupe.6G365900_v2.0.a1
pyrus_communis pycom12g24290
rosa_chinensis RchiOBHm_Chr3g0447341
rosa_laevigata RLG00000026009
rosa_roxburghii Rroxscaffold_6G00425520
rosa_rugosa Rorug02G0600100
rosa_samantha Rh3AG000400 Rh3CG000200 Rh3DG000400
rosa_wichuraiana Rw3G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 874
AciI CCGC 1 cut(s) 872
AclWI GGATC 1 cut(s) 776
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 4 cut(s) 271, 729, 741, 862
AfaI GTAC 1 cut(s) 653
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 2 cut(s) 230, 455
AgsI TTSAA 7 cut(s) 31, 230, 277, 433, 558, 862, 929
AjnI CCWGG 5 cut(s) 79, 126, 214, 280, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 8 cut(s) 8, 97, 122, 324, 502, 514, 589, 641
AluI AGCT 8 cut(s) 8, 97, 122, 324, 502, 514, 589, 641
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 3 cut(s) 53, 247, 298
AlwI GGATC 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 786
Aor51HI AGCGCT 1 cut(s) 714
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 479, 638, 710
ApoI RAATTY 4 cut(s) 271, 729, 741, 862
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspLEI GCGC 2 cut(s) 715, 825
AvaI CYCGRG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 219
BanI GGYRCC 1 cut(s) 47
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
BbsI GAAGAC 2 cut(s) 386, 936
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 3 cut(s) 466, 650, 722
BccI CCATC 2 cut(s) 303, 967
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 5 cut(s) 81, 128, 216, 282, 408
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 3 cut(s) 53, 247, 298
BfoI RGCGCY 1 cut(s) 716
BfuI GTATCC 1 cut(s) 803
BisI GCNGC 3 cut(s) 480, 639, 711
BlsI GCNGC 3 cut(s) 481, 640, 712
Bme1390I CCNGG 5 cut(s) 81, 128, 216, 282, 408
BmeT110I CYCGRG 1 cut(s) 786
BmiI GGNNCC 3 cut(s) 49, 105, 490
BmrFI CCNGG 5 cut(s) 81, 128, 216, 282, 408
BmsI GCATC 6 cut(s) 66, 592, 625, 697, 822, 834
BpiI GAAGAC 2 cut(s) 386, 936
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 2 cut(s) 138, 507
BpuEI CTTGAG 2 cut(s) 83, 645
BsaAI YACGTR 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 907
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 455
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 5 cut(s) 81, 128, 216, 282, 408
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 3 cut(s) 314, 369, 837
BseLI CCNNNNNNNGG 2 cut(s) 230, 455
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 3 cut(s) 466, 650, 722
Bsh1236I CGCG 1 cut(s) 874
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 958
BsiHKCI CYCGRG 1 cut(s) 786
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 230, 455
BsmAI GTCTC 3 cut(s) 53, 247, 298
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 50, 958
Bsp143I GATC 3 cut(s) 24, 571, 781
BspACI CCGC 1 cut(s) 872
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 49, 105, 490
BspPI GGATC 1 cut(s) 776
BspQI GCTCTTC 1 cut(s) 615
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 3 cut(s) 24, 571, 781
BssT1I CCWWGG 1 cut(s) 907
Bst2UI CCWGG 5 cut(s) 81, 128, 216, 282, 408
Bst6I CTCTTC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 538
BstC8I GCNNGC 2 cut(s) 221, 516
BstDEI CTNAG 5 cut(s) 9, 339, 450, 519, 578
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 314, 369, 837
BstFNI CGCG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 715, 825
BstKTI GATC 3 cut(s) 27, 574, 784
BstMAI GTCTC 3 cut(s) 53, 247, 298
BstMBI GATC 3 cut(s) 24, 571, 781
BstMWI GCNNNNNNNGC 2 cut(s) 488, 962
BstNI CCWGG 5 cut(s) 81, 128, 216, 282, 408
BstSCI CCNGG 5 cut(s) 79, 126, 214, 280, 406
BstSLI GKGCMC 1 cut(s) 50
BstSNI TACGTA 1 cut(s) 538
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 3 cut(s) 466, 650, 722
BstV2I GAAGAC 2 cut(s) 386, 936
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 314, 369, 837
Cac8I GCNNGC 2 cut(s) 221, 516
CfoI GCGC 2 cut(s) 715, 825
Csp6I GTAC 1 cut(s) 652
CviAII CATG 3 cut(s) 724, 734, 934
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 5 cut(s) 9, 339, 450, 519, 578
DpnI GATC 3 cut(s) 26, 573, 783
DpnII GATC 3 cut(s) 24, 571, 781
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco105I TACGTA 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 907
Eco31I GGTCTC 1 cut(s) 298
Eco47III AGCGCT 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 786
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 5 cut(s) 79, 126, 214, 280, 406
EcoT14I CCWWGG 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 907
FaeI CATG 3 cut(s) 727, 737, 937
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 183
FatI CATG 3 cut(s) 723, 733, 933
FauI CCCGC 1 cut(s) 879
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 480, 639, 711
FokI GGATG 3 cut(s) 321, 356, 844
Fsp4HI GCNGC 3 cut(s) 480, 639, 711
GlaI GCGC 2 cut(s) 714, 824
GluI GCNGC 3 cut(s) 480, 639, 711
GsuI CTGGAG 2 cut(s) 138, 507
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 2 cut(s) 715, 825
Hin1II CATG 3 cut(s) 727, 737, 937
Hin6I GCGC 2 cut(s) 713, 823
HinP1I GCGC 2 cut(s) 713, 823
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 6 cut(s) 84, 136, 191, 257, 429, 840
Hpy166II GTNNAC 2 cut(s) 721, 922
Hpy188I TCNGA 6 cut(s) 247, 262, 270, 645, 766, 781
Hpy188III TCNNGA 6 cut(s) 117, 133, 188, 486, 829, 984
Hpy8I GTNNAC 2 cut(s) 721, 922
HpyAV CCTTC 2 cut(s) 224, 935
HpyCH4IV ACGT 2 cut(s) 172, 537
HpyCH4V TGCA 6 cut(s) 419, 425, 638, 710, 835, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 962
HpyF3I CTNAG 5 cut(s) 9, 339, 450, 519, 578
HpySE526I ACGT 2 cut(s) 172, 537
Hsp92II CATG 3 cut(s) 727, 737, 937
HspAI GCGC 2 cut(s) 713, 823
Kzo9I GATC 3 cut(s) 24, 571, 781
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 4 cut(s) 109, 119, 488, 961
Lsp1109I GCAGC 3 cut(s) 466, 650, 722
LweI GCATC 6 cut(s) 66, 592, 625, 697, 822, 834
MaeII ACGT 2 cut(s) 172, 537
MaeIII GTNAC 2 cut(s) 152, 533
MalI GATC 3 cut(s) 26, 573, 783
MboI GATC 3 cut(s) 24, 571, 781
MboII GAAGA 9 cut(s) 19, 326, 386, 566, 632, 896, 925, 941, 999
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 50, 958
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 9 cut(s) 225, 271, 327, 354, 729, 741, 799, 862, 1008
MluNI TGGCCA 1 cut(s) 219
MmeI TCCRAC 2 cut(s) 523, 976
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
MseI TTAA 3 cut(s) 326, 357, 609
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 219
MspR9I CCNGG 5 cut(s) 81, 128, 216, 282, 408
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 5 cut(s) 81, 128, 216, 282, 408
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 2 cut(s) 488, 962
NdeI CATATG 1 cut(s) 421
NdeII GATC 3 cut(s) 24, 571, 781
NlaIII CATG 3 cut(s) 727, 737, 937
NlaIV GGNNCC 3 cut(s) 49, 105, 490
NmuCI GTSAC 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 6 cut(s) 84, 136, 191, 257, 429, 840
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 481, 640, 712
Ppu21I YACGTR 1 cut(s) 538
Psp6I CCWGG 5 cut(s) 79, 126, 214, 280, 406
PspGI CCWGG 5 cut(s) 79, 126, 214, 280, 406
PspN4I GGNNCC 3 cut(s) 49, 105, 490
PspXI VCTCGAGB 1 cut(s) 786
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 3 cut(s) 326, 357, 609
SatI GCNGC 3 cut(s) 480, 639, 711
Sau3AI GATC 3 cut(s) 24, 571, 781
ScrFI CCNGG 5 cut(s) 81, 128, 216, 282, 408
SduI GDGCHC 2 cut(s) 50, 958
SfaNI GCATC 6 cut(s) 66, 592, 625, 697, 822, 834
Sfr274I CTCGAG 1 cut(s) 786
SlaI CTCGAG 1 cut(s) 786
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 98, 660, 786
SmoI CTYRAG 3 cut(s) 98, 660, 786
SnaBI TACGTA 1 cut(s) 538
Sse9I AATT 9 cut(s) 225, 271, 327, 354, 729, 741, 799, 862, 1008
SsiI CCGC 1 cut(s) 872
StyD4I CCNGG 5 cut(s) 79, 126, 214, 280, 406
StyI CCWWGG 1 cut(s) 907
TaiI ACGT 2 cut(s) 175, 540
TaqI TCGA 2 cut(s) 739, 787
TasI AATT 9 cut(s) 225, 271, 327, 354, 729, 741, 799, 862, 1008
TfiI GAWTC 6 cut(s) 84, 136, 191, 257, 429, 840
Tru1I TTAA 3 cut(s) 326, 357, 609
Tru9I TTAA 3 cut(s) 326, 357, 609
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 479, 638, 710
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 28, 320, 722, 950, 954
Tth111I GACNNNGTC 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 453
XapI RAATTY 4 cut(s) 271, 729, 741, 862
XhoI CTCGAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.