RchiOBHm_Chr3g0447341

2-alkenal reductase (NADP(

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
9428 .. 12909
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41480

Sequence Viewer

Length: 1032 bp
ATGGAAGCAGAGAACAAACAAGTGATCTTCAAGGGGTTCATAGAGGGCACTCCAAAGGAGACAGACTTACAAGTGATGGCTGGGATTAGTATCAAGCTCAAGGCTCCTAAAGGCTCTGGAGCTTTCCTGGTCAAGAATCTCTACCTCTCTTGTGACCCTTATATGAGGGGACGTATGCGTGATTTTCGTGATTCATATCTTCCTCCATTCGTTCCTGGCAAGCCACTTGAAGGATTTGGTGTCTCCCAAGTTGTGGATTCTGATAATCCGAGTTTCAAGCCTGGCGACTTGATCTCTGGCATAACCGGATGGGAAGAATACAGCTTGATTCGTAGAACTGAGCAGTTGAGAAAAATTAAGCAAGATGACATCCCTCTATCGTTCCATTTGGGTCTTCTTGGTATGCCAGGTTTTACTGCATATGCAGGATTCAATGAGGTCTGCTCTCCTAAGAAAGGGGAATATGTTTTAGTTTCTGCTGCTTCTGGAGCCGTTGGTCAGCTTGTTGGTCAGCTTGCTAAGTTGCTTGGCTGTCACGTAGTTGGAAGTTCTGGTTCAAGCCAAAAGGTTGATCTTCTGAGGAATAAGCTTGGTTTTGATGATGCTTTTAACTACAAGGAAGAGCCAGACCTCGATGCAGCTCTGAAAAGGTACTTTCCTCAAGGTATTGACATCTACTTTGATAATGTGGGAGGGGAAATGCTTGATGCAGCGCTTCTCAACATGAGAATTCATGGTCGAATTGCTGTTTGTGGGATGGTGTCTGAAAAAAATCTCTCTGATCCCGGAGGGATCCACAATTTATACAATCTCATAACAAAGCGCATCAGGATGCAAGGATTTCTGCAAAGTGATTACTTACACTTGTACCCGCGTTTCTTGGAAGATGTTATTAGCCTCTACAAGCAAGGGAAGATTGTTTACGTTGAAGACATGAATGAAGGCTTGGAAAGTGCTCCATCTGCTTTTGTTGGGTTATTTTCAGGAAGAAATATTGGCAAGCAAGTCATTCGTGTCGCAAGATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

343

Amino Acids

37.97

Weight (kDa)

6.97

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 6 - 116 5.6e-25 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 164 - 287 4.5e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 197 - 337 1.8e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_6g00020
malus_domestica MD12G1260900.v1.1
prunus_persica Prupe.6G365900_v2.0.a1
pyrus_communis pycom12g24290
rosa_chinensis RchiOBHm_Chr3g0447341
rosa_laevigata RLG00000026009
rosa_roxburghii Rroxscaffold_6G00425520
rosa_rugosa Rorug02G0600100
rosa_samantha Rh3AG000400 Rh3CG000200 Rh3DG000400
rosa_wichuraiana Rw3G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AccII CGCG 1 cut(s) 874
AciI CCGC 1 cut(s) 872
AclWI GGATC 3 cut(s) 776, 787, 800
AcsI RAATTY 1 cut(s) 729
AfaI GTAC 2 cut(s) 653, 869
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 3 cut(s) 230, 253, 455
AgsI TTSAA 6 cut(s) 31, 230, 277, 433, 558, 929
AjnI CCWGG 4 cut(s) 126, 214, 280, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 7 cut(s) 97, 122, 324, 502, 514, 589, 641
AluI AGCT 7 cut(s) 97, 122, 324, 502, 514, 589, 641
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 2 cut(s) 53, 247
AlwI GGATC 3 cut(s) 776, 787, 800
Aor51HI AGCGCT 1 cut(s) 714
ApeKI GCWGC 3 cut(s) 479, 638, 710
ApoI RAATTY 1 cut(s) 729
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspLEI GCGC 2 cut(s) 715, 825
AsuC2I CCSGG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 851, 884
BamHI GGATCC 1 cut(s) 792
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
BbsI GAAGAC 2 cut(s) 386, 936
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 3 cut(s) 466, 650, 722
BccI CCATC 4 cut(s) 70, 303, 751, 967
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 4 cut(s) 128, 216, 282, 408
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 2 cut(s) 53, 247
BfoI RGCGCY 1 cut(s) 716
BisI GCNGC 3 cut(s) 480, 639, 711
BlsI GCNGC 3 cut(s) 481, 640, 712
Bme1390I CCNGG 5 cut(s) 128, 216, 282, 408, 786
BmiI GGNNCC 3 cut(s) 105, 490, 794
BmrFI CCNGG 5 cut(s) 128, 216, 282, 408, 786
BmsI GCATC 5 cut(s) 592, 625, 697, 822, 834
BpiI GAAGAC 2 cut(s) 386, 936
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 2 cut(s) 138, 507
BpuEI CTTGAG 2 cut(s) 83, 645
BpuMI CCSGG 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 538
BsaBI GATNNNNATC 2 cut(s) 89, 195
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 253, 455
Bse8I GATNNNNATC 2 cut(s) 89, 195
BseBI CCWGG 4 cut(s) 128, 216, 282, 408
BseGI GGATG 4 cut(s) 314, 369, 762, 837
BseJI GATNNNNATC 2 cut(s) 89, 195
BseLI CCNNNNNNNGG 3 cut(s) 230, 253, 455
BseMII CTCAG 2 cut(s) 330, 569
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 3 cut(s) 466, 650, 722
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 874
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 2 cut(s) 306, 786
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 230, 253, 455
BsmAI GTCTC 2 cut(s) 53, 247
BsmFI GGGAC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 50, 958
Bsp143I GATC 5 cut(s) 24, 291, 571, 781, 792
BspACI CCGC 1 cut(s) 872
BspCNI CTCAG 2 cut(s) 331, 570
BspFNI CGCG 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 105, 490, 794
BspPI GGATC 3 cut(s) 776, 787, 800
BspQI GCTCTTC 1 cut(s) 615
BssMI GATC 5 cut(s) 24, 291, 571, 781, 792
Bst2UI CCWGG 4 cut(s) 128, 216, 282, 408
Bst6I CTCTTC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 221, 516, 1001
BstDEI CTNAG 4 cut(s) 339, 450, 519, 578
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 4 cut(s) 314, 369, 762, 837
BstFNI CGCG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 715, 825
BstKTI GATC 5 cut(s) 27, 294, 574, 784, 795
BstMAI GTCTC 2 cut(s) 53, 247
BstMBI GATC 5 cut(s) 24, 291, 571, 781, 792
BstMWI GCNNNNNNNGC 2 cut(s) 488, 962
BstNI CCWGG 4 cut(s) 128, 216, 282, 408
BstSCI CCNGG 5 cut(s) 126, 214, 280, 406, 784
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 3 cut(s) 466, 650, 722
BstV2I GAAGAC 2 cut(s) 386, 936
BstX2I RGATCY 1 cut(s) 792
BstYI RGATCY 1 cut(s) 792
BtsCI GGATG 4 cut(s) 314, 369, 762, 837
Cac8I GCNNGC 3 cut(s) 221, 516, 1001
CfoI GCGC 2 cut(s) 715, 825
Csp6I GTAC 2 cut(s) 652, 868
CviAII CATG 3 cut(s) 724, 734, 934
CviQI GTAC 2 cut(s) 652, 868
DdeI CTNAG 4 cut(s) 339, 450, 519, 578
DpnI GATC 5 cut(s) 26, 293, 573, 783, 794
DpnII GATC 5 cut(s) 24, 291, 571, 781, 792
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco47III AGCGCT 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 4 cut(s) 126, 214, 280, 406
FaeI CATG 3 cut(s) 727, 737, 937
FaqI GGGAC 1 cut(s) 183
FatI CATG 3 cut(s) 723, 733, 933
FauI CCCGC 1 cut(s) 879
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 480, 639, 711
FokI GGATG 4 cut(s) 321, 356, 769, 844
Fsp4HI GCNGC 3 cut(s) 480, 639, 711
GlaI GCGC 2 cut(s) 714, 824
GluI GCNGC 3 cut(s) 480, 639, 711
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 138, 507
HaeII RGCGCY 1 cut(s) 716
HapII CCGG 2 cut(s) 306, 786
HhaI GCGC 2 cut(s) 715, 825
Hin1II CATG 3 cut(s) 727, 737, 937
Hin6I GCGC 2 cut(s) 713, 823
HinP1I GCGC 2 cut(s) 713, 823
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 5 cut(s) 136, 191, 257, 328, 429
HpaII CCGG 2 cut(s) 306, 786
Hpy166II GTNNAC 1 cut(s) 922
Hpy188I TCNGA 6 cut(s) 262, 270, 579, 645, 766, 781
Hpy188III TCNNGA 6 cut(s) 117, 133, 188, 486, 829, 984
Hpy8I GTNNAC 1 cut(s) 922
HpyAV CCTTC 2 cut(s) 224, 935
HpyCH4IV ACGT 3 cut(s) 172, 537, 924
HpyCH4V TGCA 6 cut(s) 419, 425, 638, 710, 835, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 962
HpyF3I CTNAG 4 cut(s) 339, 450, 519, 578
HpySE526I ACGT 3 cut(s) 172, 537, 924
Hsp92II CATG 3 cut(s) 727, 737, 937
HspAI GCGC 2 cut(s) 713, 823
Kzo9I GATC 5 cut(s) 24, 291, 571, 781, 792
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 4 cut(s) 109, 119, 488, 961
Lsp1109I GCAGC 3 cut(s) 466, 650, 722
LweI GCATC 5 cut(s) 592, 625, 697, 822, 834
MaeII ACGT 3 cut(s) 172, 537, 924
MaeIII GTNAC 2 cut(s) 152, 533
MalI GATC 5 cut(s) 26, 293, 573, 783, 794
MboI GATC 5 cut(s) 24, 291, 571, 781, 792
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 2 cut(s) 50, 958
MluCI AATT 4 cut(s) 354, 729, 741, 799
MmeI TCCRAC 1 cut(s) 523
MseI TTAA 2 cut(s) 357, 609
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 2 cut(s) 306, 786
MspR9I CCNGG 5 cut(s) 128, 216, 282, 408, 786
MvaI CCWGG 4 cut(s) 128, 216, 282, 408
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 2 cut(s) 488, 962
NciI CCSGG 1 cut(s) 786
NdeI CATATG 1 cut(s) 421
NdeII GATC 5 cut(s) 24, 291, 571, 781, 792
NlaIII CATG 3 cut(s) 727, 737, 937
NlaIV GGNNCC 3 cut(s) 105, 490, 794
NmuCI GTSAC 2 cut(s) 152, 533
PciSI GCTCTTC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 136, 191, 257, 328, 429
PflMI CCANNNNNTGG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 3 cut(s) 481, 640, 712
Ppu21I YACGTR 1 cut(s) 538
Psp6I CCWGG 4 cut(s) 126, 214, 280, 406
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 4 cut(s) 126, 214, 280, 406
PspN4I GGNNCC 3 cut(s) 105, 490, 794
PsuI RGATCY 1 cut(s) 792
RsaI GTAC 2 cut(s) 653, 869
RsaNI GTAC 2 cut(s) 652, 868
RseI CAYNNNNRTG 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 2 cut(s) 357, 609
SatI GCNGC 3 cut(s) 480, 639, 711
Sau3AI GATC 5 cut(s) 24, 291, 571, 781, 792
ScrFI CCNGG 5 cut(s) 128, 216, 282, 408, 786
SduI GDGCHC 2 cut(s) 50, 958
SfaNI GCATC 5 cut(s) 592, 625, 697, 822, 834
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 2 cut(s) 98, 660
SmoI CTYRAG 2 cut(s) 98, 660
Sse9I AATT 4 cut(s) 354, 729, 741, 799
SsiI CCGC 1 cut(s) 872
SspI AATATT 1 cut(s) 994
StyD4I CCNGG 5 cut(s) 126, 214, 280, 406, 784
TaiI ACGT 3 cut(s) 175, 540, 927
TaqI TCGA 2 cut(s) 633, 739
TasI AATT 4 cut(s) 354, 729, 741, 799
TfiI GAWTC 5 cut(s) 136, 191, 257, 328, 429
Tru1I TTAA 2 cut(s) 357, 609
Tru9I TTAA 2 cut(s) 357, 609
TseFI GTSAC 2 cut(s) 152, 533
TseI GCWGC 3 cut(s) 479, 638, 710
Tsp45I GTSAC 2 cut(s) 152, 533
TspDTI ATGAA 5 cut(s) 28, 183, 722, 950, 954
Van91I CCANNNNNTGG 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 453
XapI RAATTY 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.