AT1G67210

Proline-rich spliceosome-associated (PSP) family protein zinc knuckle (CCHC-type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007074
Physical Location & Seq
Forward (+)
25140815 .. 25144049
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67210.2

Sequence Viewer

Length: 1218 bp
ATGGCAGCTTCAAGCGGCTCTGGTTTGGAAGCTGAGGAGGGGGAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATGATTTCAGAAATGTGTCTGGCCAGTTTTCAGGACAAGCATCGATCGTGGAGGTTGGGGATGCTGTTGATGTGAGAGTCGAAACCGTGAAAGTAGATGTTAGTTCTAAATCTGGTGTTAAAAGAGCCAGAACAATCTCTCTGGAACAGCAACCTTCAGTCCATGTTACTTATAAACACTTAACAAGAGATAGTAAGCAGAAGCTGGAAAGTTTATTACAGCAATGGTCAGAATGGGAGGCAGAACAAAATTCCTTGTCCGAGGATCAAGAACAAGTACTAGAAGCTGGTGATGAGACATACTTTCCTGCTTTGCGTGTGGGATTGCAGAAGACATCATCTGTATCATTTTGGTTTGACTACCAAACTGGTCACAGTTCTTCGAAGAAGTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTATAACCGTGGATTTACAATTGGTTTAGATTCAGGTTCAAATAACGTGGAAGGAGGCTTGGAGATTATTGATGATCCTCCACGTTGCTTCAACTGTGGCGCATACAGTCATTCTATTAGAGAATGTCCAAGGCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGCAACATAAAAGAAAAAGAAATCAGACTCCTGGATCCCGTCTACCATCCAGATATTATCAGAGCCTTCAACGTGGAAAATATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAGCTTCTCGGTCTAAAGGAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCCACCAGGATATTTTGCTGTAGAAGAAGACGATGATGATCACTCGAGAATAACTATATTTGGTGAGGAAGAGACTAAAGAAGAGGAAGAAGTTAAGACTGAAGAAGGTGAAATCTTGGAAAAAGCTAGCCCTCAAGAGCCAAGAAAGATAATGACAGTTGGATTTCCCGGTATTAACGCACCCATTCCAGAAAACGCAGATTCGTGGCTATGGGAACAGAGGAATAGTAACACAGGACATACTAATTATCATAATCACCTTCGACCACAATATGAGATGGGCCCTCTAGGTATTCAACTGTCTTCAAGCTTTCCTCCAATGCATGGCATTAGATATGATCATAGGTTCGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSP zf-CCHC

Protein Analysis

405

Amino Acids

45.65

Weight (kDa)

5.03

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSP PF04046 256 - 291 3.9e-12 PSP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 258, 510
AccB7I CCANNNNNTGG 1 cut(s) 1184
AccI GTMKAC 1 cut(s) 715
AccII CGCG 1 cut(s) 793
AciI CCGC 1 cut(s) 15
AclWI GGATC 6 cut(s) 81, 357, 575, 702, 715, 815
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 225, 981
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 1184
AflIII ACRYGT 1 cut(s) 791
AgsI TTSAA 7 cut(s) 12, 546, 598, 743, 766, 1157, 1167
AjnI CCWGG 3 cut(s) 703, 769, 865
AluBI AGCT 7 cut(s) 8, 32, 289, 371, 799, 986, 1170
AluI AGCT 7 cut(s) 8, 32, 289, 371, 799, 986, 1170
Alw26I GTCTC 3 cut(s) 374, 782, 926
AlwI GGATC 6 cut(s) 81, 357, 575, 702, 715, 815
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 904
AoxI GGCC 3 cut(s) 106, 638, 1141
ApaI GGGCCC 1 cut(s) 1145
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 1141, 1142
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 4 cut(s) 386, 935, 980, 1109
AsuII TTCGAA 1 cut(s) 467
AsuNHI GCTAGC 1 cut(s) 986
AvaI CYCGRG 1 cut(s) 904
BaeGI GKGCMC 1 cut(s) 1145
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 1145
BbsI GAAGAC 4 cut(s) 72, 422, 894, 1155
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 727, 752, 1132
BciT130I CCWGG 3 cut(s) 705, 771, 867
BclI TGATCA 2 cut(s) 898, 1198
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 3 cut(s) 374, 782, 926
BfaI CTAG 3 cut(s) 365, 987, 1148
BfmI CTRYAG 1 cut(s) 879
BisI GCNGC 2 cut(s) 6, 16
BlsI GCNGC 2 cut(s) 7, 17
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 4 cut(s) 705, 771, 867, 1029
BmeT110I CYCGRG 1 cut(s) 904
BmgT120I GGNCC 2 cut(s) 1141, 1142
BmiI GGNNCC 2 cut(s) 709, 1143
BmrFI CCNGG 4 cut(s) 705, 771, 867, 1029
BmsI GCATC 3 cut(s) 134, 136, 772
BmtI GCTAGC 1 cut(s) 990
BpiI GAAGAC 4 cut(s) 72, 422, 894, 1155
Bpu10I CCTNAGC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 978
BpuMI CCSGG 1 cut(s) 1029
Bsa29I ATCGAT 2 cut(s) 128, 649
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 4 cut(s) 345, 514, 635, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 1184
Bse1I ACTGG 3 cut(s) 109, 457, 482
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 3 cut(s) 705, 771, 867
BseCI ATCGAT 2 cut(s) 128, 649
BseDI CCNNGG 4 cut(s) 345, 514, 635, 830
BseGI GGATG 2 cut(s) 151, 719
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 1 cut(s) 1184
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 3 cut(s) 109, 457, 482
BseRI GAGGAG 3 cut(s) 50, 492, 816
BseSI GKGCMC 1 cut(s) 1145
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 793
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 108, 640, 1143
BshVI ATCGAT 2 cut(s) 128, 649
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 1 cut(s) 1029
BslI CCNNNNNNNGG 1 cut(s) 1184
BsmAI GTCTC 3 cut(s) 374, 782, 926
BsmBI CGTCTC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 3 cut(s) 108, 640, 1143
BsoBI CYCGRG 1 cut(s) 904
Bsp119I TTCGAA 1 cut(s) 467
Bsp120I GGGCCC 1 cut(s) 1141
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp19I CCATGG 1 cut(s) 830
BspACI CCGC 1 cut(s) 15
BspANI GGCC 3 cut(s) 108, 640, 1143
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 2 cut(s) 128, 649
BspFNI CGCG 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 709, 1143
BspOI GCTAGC 1 cut(s) 990
BspPI GGATC 6 cut(s) 81, 357, 575, 702, 715, 815
BspT104I TTCGAA 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 314
BsrI ACTGG 3 cut(s) 109, 457, 482
BssECI CCNNGG 4 cut(s) 345, 514, 635, 830
BssT1I CCWWGG 2 cut(s) 635, 830
Bst2UI CCWGG 3 cut(s) 705, 771, 867
Bst4CI ACNGT 7 cut(s) 172, 461, 515, 602, 614, 1018, 1161
Bst6I CTCTTC 2 cut(s) 924, 936
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 514, 830
BstF5I GGATG 2 cut(s) 151, 719
BstFNI CGCG 1 cut(s) 793
BstHHI GCGC 1 cut(s) 608
BstMAI GTCTC 3 cut(s) 374, 782, 926
BstMCI CGRYCG 1 cut(s) 132
BstNI CCWGG 3 cut(s) 705, 771, 867
BstSCI CCNGG 4 cut(s) 703, 769, 865, 1027
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 1145
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 4 cut(s) 72, 422, 894, 1155
BstX2I RGATCY 2 cut(s) 73, 707
BstYI RGATCY 2 cut(s) 73, 707
Bsu15I ATCGAT 2 cut(s) 128, 649
BsuRI GGCC 3 cut(s) 108, 640, 1143
BsuTUI ATCGAT 2 cut(s) 128, 649
BtgI CCRYGG 2 cut(s) 514, 830
BtsCI GGATG 2 cut(s) 151, 719
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 988
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 2 cut(s) 1141, 1142
ClaI ATCGAT 2 cut(s) 128, 649
CseI GACGC 1 cut(s) 799
Csp6I GTAC 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 5 cut(s) 58, 70, 248, 831, 1184
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 924, 936
EarI CTCTTC 2 cut(s) 924, 936
Eco130I CCWWGG 2 cut(s) 635, 830
Eco147I AGGCCT 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 1145
Eco32I GATATC 1 cut(s) 860
Eco57I CTGAAG 2 cut(s) 225, 981
Eco88I CYCGRG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 1142
EcoRII CCWGG 3 cut(s) 703, 769, 865
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 2 cut(s) 635, 830
EcoT22I ATGCAT 1 cut(s) 1185
EcoT38I GRGCYC 1 cut(s) 1145
ErhI CCWWGG 2 cut(s) 635, 830
Esp3I CGTCTC 1 cut(s) 782
FaeI CATG 5 cut(s) 61, 73, 251, 834, 1187
FatI CATG 5 cut(s) 57, 69, 247, 830, 1183
FbaI TGATCA 2 cut(s) 898, 1198
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 2 cut(s) 6, 16
FokI GGATG 2 cut(s) 158, 706
FriOI GRGCYC 1 cut(s) 1145
Fsp4HI GCNGC 2 cut(s) 6, 16
FspBI CTAG 3 cut(s) 365, 987, 1148
GlaI GCGC 1 cut(s) 607
GluI GCNGC 2 cut(s) 6, 16
HaeIII GGCC 3 cut(s) 108, 640, 1143
HapII CCGG 1 cut(s) 1029
HgaI GACGC 1 cut(s) 799
HhaI GCGC 1 cut(s) 608
Hin1II CATG 5 cut(s) 61, 73, 251, 834, 1187
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HindIII AAGCTT 2 cut(s) 797, 1168
HinfI GANTC 4 cut(s) 162, 536, 700, 1061
HpaII CCGG 1 cut(s) 1029
HphI GGTGA 4 cut(s) 386, 935, 980, 1109
Hpy166II GTNNAC 1 cut(s) 716
Hpy188I TCNGA 6 cut(s) 95, 316, 346, 672, 699, 735
Hpy188III TCNNGA 7 cut(s) 117, 227, 353, 723, 906, 995, 1049
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 5 cut(s) 249, 551, 749, 959, 1130
HpyCH4III ACNGT 7 cut(s) 172, 461, 515, 602, 614, 1018, 1161
HpyCH4IV ACGT 3 cut(s) 552, 589, 745
HpyCH4V TGCA 3 cut(s) 412, 785, 1183
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 3 cut(s) 552, 589, 745
Hsp92II CATG 5 cut(s) 61, 73, 251, 834, 1187
HspAI GCGC 1 cut(s) 606
Ksp22I TGATCA 2 cut(s) 898, 1198
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 134, 136, 772
MaeI CTAG 3 cut(s) 365, 987, 1148
MaeII ACGT 3 cut(s) 552, 589, 745
MaeIII GTNAC 3 cut(s) 250, 455, 1088
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 73, 707
MhlI GDGCHC 1 cut(s) 1145
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 334, 525, 1105
MluI ACGCGT 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 2 cut(s) 171, 694
MmeI TCCRAC 1 cut(s) 1000
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 1185
MscI TGGCCA 1 cut(s) 108
MseI TTAA 5 cut(s) 204, 266, 837, 954, 1035
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 1029
MspR9I CCNGG 4 cut(s) 705, 771, 867, 1029
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 3 cut(s) 705, 771, 867
MvnI CGCG 1 cut(s) 793
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 830
NheI GCTAGC 1 cut(s) 986
NlaIII CATG 5 cut(s) 61, 73, 251, 834, 1187
NlaIV GGNNCC 2 cut(s) 709, 1143
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 1185
NspV TTCGAA 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 904
PceI AGGCCT 1 cut(s) 640
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 536, 1061
PflMI CCANNNNNTGG 1 cut(s) 1184
PfoI TCCNGGA 1 cut(s) 703
PkrI GCNGC 2 cut(s) 7, 17
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 2 cut(s) 170, 694
PpsI GAGTC 2 cut(s) 170, 694
PsiI TTATAA 2 cut(s) 258, 510
Psp6I CCWGG 3 cut(s) 703, 769, 865
PspGI CCWGG 3 cut(s) 703, 769, 865
PspN4I GGNNCC 2 cut(s) 709, 1143
PspOMI GGGCCC 1 cut(s) 1141
PspPI GGNCC 2 cut(s) 1141, 1142
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 73, 707
PvuI CGATCG 1 cut(s) 132
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 5 cut(s) 204, 266, 837, 954, 1035
SatI GCNGC 2 cut(s) 6, 16
Sau96I GGNCC 2 cut(s) 1141, 1142
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 2 cut(s) 171, 694
ScrFI CCNGG 4 cut(s) 705, 771, 867, 1029
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 3 cut(s) 134, 136, 772
SfcI CTRYAG 1 cut(s) 879
Sfr274I CTCGAG 1 cut(s) 904
SfuI TTCGAA 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 904
SmlI CTYRAG 2 cut(s) 904, 993
SmoI CTYRAG 2 cut(s) 904, 993
Sse9I AATT 3 cut(s) 334, 525, 1105
SseBI AGGCCT 1 cut(s) 640
SsiI CCGC 1 cut(s) 15
SspMI CTAG 3 cut(s) 365, 987, 1148
StuI AGGCCT 1 cut(s) 640
StyD4I CCNGG 4 cut(s) 703, 769, 865, 1027
StyI CCWWGG 2 cut(s) 635, 830
TaaI ACNGT 7 cut(s) 172, 461, 515, 602, 614, 1018, 1161
TaiI ACGT 3 cut(s) 555, 592, 748
TaqI TCGA 7 cut(s) 128, 165, 467, 649, 819, 905, 1123
TaqII GACCGA 1 cut(s) 794
TasI AATT 3 cut(s) 334, 525, 1105
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 536, 1061
Tru1I TTAA 5 cut(s) 204, 266, 837, 954, 1035
Tru9I TTAA 5 cut(s) 204, 266, 837, 954, 1035
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 455
TspRI CASTG 1 cut(s) 489
Van91I CCANNNNNTGG 1 cut(s) 1184
XapI RAATTY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 715
XspI CTAG 3 cut(s) 365, 987, 1148
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.