pycom09g00910

proline-rich domain in spliceosome associated proteins

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
673552 .. 677531
3980 bp
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UTR
Exon/CDS
Intron
pycom09g00910.7

Sequence Viewer

Length: 1800 bp
ATGGAATCCGAGAATTTTATCAGCCTCCCTGATTCTGGTGATTCTGTCATCGAGAATGCGGGGCATGAAAGCGATGTTCAACATGAAGTTAAAGAAAACGGGGAGATTCTGGGGCATGAAAGTGATGTTCAATGTGAAGTTCAAGCTAACAGTGAGAAACTGAGGCATGAAAGTGGTGTTCAATATGAAGTTAGCCATTGCATGCTGGAATCAAACCTTGAAAAAGAATTGGTCGATGGTGATTCAGATATGGAAATCGAGGACATAAACAACCTTCCTGCCTTGAACAGTTCTTGTTCGGCAAATGAAGAAATCAAATTAGTGGGTAACAAGAACGGGGATGCTCATTTTATACAGTCTGAAACTGTTACAGTTGCAGGGGAGTCAAATGTTTTGTTCCCAAAGGTGCATGAGAATGGTTGCCTTCCAGTCCAAGATTCAAGGACCTTTGAAGTCCACAAAAAGGGTGGCACTTCAATATCAGGTGTTAAGAGAGCTAGAATGACAGTTGATGAACAGAAAGCTTCAGTTCGTGTGACATTTGATTCATTGACAAGAGCTAGTAAACAAAAGCTTGAGGAACTATTACAGCAGTGGTCAGAGTGGCATGCAAAGCATGTTTCTTCATCTCAAGATTCTATTGAAGTAGTGGAATCAGGTGAAGAGACCTTCTTTCCAGCTCTTCATGTTGGCATAGAGAAGACATCTGCGGTGTCTTTTTGGATGGACAACCAAACACAGAAAGCAGATAACAACGAATCCAACCTTTTGGATAACAAAGACGTGCCCCTGTATGATCGTGGTTATGCCTTAGGTTTGACTTTGGCTGGTAGCTCAATTAATGCAGAGGGAGGCTTGGAGATTATAGATGATGCAAGTCGTTGTTTCAATTGTGGCTCTTATAGTCATTCGTTGAAAAATTGCCCAAAGCCTCGTAACCATGCTGCTGTCAACAGTGCTCGTAAACAGCTAAAGTCCAAACGTAATCAAAATGCTAATTCCCGTAATCCAACACGATATTATCAGGATTCTCCAGCTGGAAAGTATGATGGTTTAAGGCCTGGTGCTCTCGATTCTGAGACACGGAAGCTTTTGGGGCTTGGGGAGTTTGATCCACCGCCTTGGCTTAACAGAATGCGAGAAATTGGTTACCCACCGGGATATCTAGATGTAGATGATGAGGATCAGCCATCAGGCATAATAATTTATGCTGATGGGGAAATTAAGGAAGAACAGGAGGACGGTGAAATTGTTCAGACAGACTATGCTGACCCGGAGAGGAAAAAGACAGTCGAATTTCCAGGAGTAAACGCACCAATCCCAGAAAATGCTGATGAGAGGCTTTGGGCACCTGGACATTCAATTGGAGATCTCTCTAGGAACCGTTCACACAGCAGAATAAGCCATCATTCGGAACCTGTCAGCAGAGGGCATCACCGCGAGCAAAGGTGGTCCAGGGATTATGGAGACGATGGGCCTCCTGGTGTTGACCCAGGTTTTGCGCCATCTAACTACCCTCCAAGATATGGTAGTTATGATTACGGTTACAACTCTCACAGTTCAAGTGCTTCAGCACCAAGAAGTCCTACCTTCGGAAGGTCCCAGTCAGAGAGAGGTCGAAGAATCTCTTCGTTCAATGAAGGTTCTTTTCCTTACTCCAATTCTCGTCATTCACCAAAGGATTATGGCGCGGGGAATACTGAAAGTTGGAATGATGAAAGCAGGAATGACTACGACCTTGATAATTCAAGTTATAGTAGGGATAGGCTAGACAGGTATCGCCATCACCGTTGGAGGTAA
Functional Annotation

Protein Analysis

600

Amino Acids

67.02

Weight (kDa)

5.13

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1348
AccB7I CCANNNNNTGG 1 cut(s) 1526
AccII CGCG 2 cut(s) 1440, 1691
AciI CCGC 5 cut(s) 59, 710, 1118, 1438, 1691
AclWI GGATC 2 cut(s) 1106, 1191
AcsI RAATTY 2 cut(s) 13, 1295
AcuI CTGAAG 2 cut(s) 510, 1554
AfiI CCNNNNNNNGG 6 cut(s) 35, 463, 1411, 1526, 1592, 1596
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 6 cut(s) 1060, 1300, 1351, 1454, 1480, 1492
Alw21I GWGCWC 2 cut(s) 961, 1069
Alw26I GTCTC 3 cut(s) 659, 1073, 1461
AlwI GGATC 2 cut(s) 1106, 1191
AoxI GGCC 2 cut(s) 1058, 1475
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 2 cut(s) 13, 1295
ArsI GACNNNNNNTTYG 2 cut(s) 1481, 1513
AseI ATTAAT 1 cut(s) 840
Asp700I GAANNNNTTC 2 cut(s) 1251, 1627
AspLEI GCGC 2 cut(s) 1504, 1691
AspS9I GGNCC 4 cut(s) 444, 1452, 1475, 1599
AsuC2I CCSGG 2 cut(s) 1158, 1274
AsuHPI GGTGA 7 cut(s) 50, 251, 671, 1256, 1427, 1665, 1778
AvaII GGWCC 3 cut(s) 444, 1452, 1599
AxyI CCTNAGG 1 cut(s) 811
BaeGI GKGCMC 2 cut(s) 789, 1351
BanI GGYRCC 1 cut(s) 1348
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 961, 1069
BbvI GCAGC 1 cut(s) 931
BccI CCATC 9 cut(s) 230, 718, 1043, 1198, 1208, 1413, 1466, 1513, 1791
BciT130I CCWGG 6 cut(s) 1062, 1302, 1353, 1456, 1482, 1494
BcnI CCSGG 2 cut(s) 1158, 1274
BcoDI GTCTC 3 cut(s) 659, 1073, 1461
BfaI CTAG 5 cut(s) 498, 561, 1166, 1377, 1769
BglII AGATCT 1 cut(s) 1369
BisI GCNGC 1 cut(s) 945
BlsI GCNGC 1 cut(s) 946
Bme1390I CCNGG 8 cut(s) 1062, 1158, 1274, 1302, 1353, 1456, 1482, 1494
Bme18I GGWCC 3 cut(s) 444, 1452, 1599
BmgBI CACGTC 1 cut(s) 784
BmgT120I GGNCC 4 cut(s) 444, 1452, 1475, 1599
BmiI GGNNCC 4 cut(s) 1350, 1382, 1416, 1601
BmrFI CCNGG 8 cut(s) 1062, 1158, 1274, 1302, 1353, 1456, 1482, 1494
BmrI ACTGGG 1 cut(s) 1597
BmsI GCATC 3 cut(s) 331, 862, 1441
BmuI ACTGGG 1 cut(s) 1597
BpiI GAAGAC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 2 cut(s) 596, 615
BpuMI CCSGG 2 cut(s) 1158, 1274
BsaBI GATNNNNATC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 3 cut(s) 1121, 1455, 1492
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 463, 1411, 1526, 1592, 1596
Bse1I ACTGG 2 cut(s) 428, 1603
Bse21I CCTNAGG 1 cut(s) 811
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 1182
BseBI CCWGG 6 cut(s) 1062, 1302, 1353, 1456, 1482, 1494
BseDI CCNNGG 3 cut(s) 1121, 1455, 1492
BseGI GGATG 2 cut(s) 346, 729
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 6 cut(s) 35, 463, 1411, 1526, 1592, 1596
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 152, 1068
BseNI ACTGG 2 cut(s) 428, 1603
BseSI GKGCMC 2 cut(s) 789, 1351
BseXI GCAGC 1 cut(s) 931
Bsh1236I CGCG 2 cut(s) 1440, 1691
BshFI GGCC 2 cut(s) 1060, 1477
BshNI GGYRCC 1 cut(s) 1348
BsiHKAI GWGCWC 2 cut(s) 961, 1069
BsiSI CCGG 2 cut(s) 1157, 1274
BslFI GGGAC 1 cut(s) 1585
BslI CCNNNNNNNGG 6 cut(s) 35, 463, 1411, 1526, 1592, 1596
BsmAI GTCTC 3 cut(s) 659, 1073, 1461
BsmBI CGTCTC 1 cut(s) 1461
BsmFI GGGAC 1 cut(s) 1585
BsmI GAATGC 2 cut(s) 61, 1140
BsnI GGCC 2 cut(s) 1060, 1477
Bso31I GGTCTC 1 cut(s) 659
Bsp1286I GDGCHC 4 cut(s) 789, 961, 1069, 1351
Bsp143I GATC 4 cut(s) 796, 1111, 1183, 1369
BspACI CCGC 5 cut(s) 59, 710, 1118, 1438, 1691
BspANI GGCC 2 cut(s) 1060, 1477
BspCNI CTCAG 2 cut(s) 153, 1069
BspFNI CGCG 2 cut(s) 1440, 1691
BspLI GGNNCC 4 cut(s) 1350, 1382, 1416, 1601
BspPI GGATC 2 cut(s) 1106, 1191
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 1348
BspTNI GGTCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 2 cut(s) 428, 1603
BssECI CCNNGG 3 cut(s) 1121, 1455, 1492
BssMI GATC 4 cut(s) 796, 1111, 1183, 1369
BssT1I CCWWGG 1 cut(s) 1121
Bst2UI CCWGG 6 cut(s) 1062, 1302, 1353, 1456, 1482, 1494
Bst6I CTCTTC 3 cut(s) 657, 687, 1633
BstC8I GCNNGC 3 cut(s) 203, 609, 1442
BstDEI CTNAG 3 cut(s) 161, 811, 1077
BstEII GGTNACC 1 cut(s) 1148
BstENI CCTNNNNNAGG 1 cut(s) 1594
BstF5I GGATG 2 cut(s) 346, 729
BstFNI CGCG 2 cut(s) 1440, 1691
BstHHI GCGC 2 cut(s) 1504, 1691
BstKTI GATC 4 cut(s) 799, 1114, 1186, 1372
BstMAI GTCTC 3 cut(s) 659, 1073, 1461
BstMBI GATC 4 cut(s) 796, 1111, 1183, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 613, 1096, 1401
BstNI CCWGG 6 cut(s) 1062, 1302, 1353, 1456, 1482, 1494
BstNSI RCATGY 3 cut(s) 205, 611, 620
BstPI GGTNACC 1 cut(s) 1148
BstSCI CCNGG 8 cut(s) 1060, 1156, 1272, 1300, 1351, 1454, 1480, 1492
BstSLI GKGCMC 2 cut(s) 789, 1351
BstUI CGCG 2 cut(s) 1440, 1691
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 1369
BstXI CCANNNNNNTGG 2 cut(s) 769, 1122
BstYI RGATCY 1 cut(s) 1369
Bsu36I CCTNAGG 1 cut(s) 811
BsuRI GGCC 2 cut(s) 1060, 1477
BtgZI GCGATG 1 cut(s) 87
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 2 cut(s) 346, 729
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 3 cut(s) 157, 599, 961
Cac8I GCNNGC 3 cut(s) 203, 609, 1442
CfoI GCGC 2 cut(s) 1504, 1691
Cfr13I GGNCC 4 cut(s) 444, 1452, 1475, 1599
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
DdeI CTNAG 3 cut(s) 161, 811, 1077
DpnI GATC 4 cut(s) 798, 1113, 1185, 1371
DpnII GATC 4 cut(s) 796, 1111, 1183, 1369
Eam1104I CTCTTC 3 cut(s) 657, 687, 1633
EarI CTCTTC 3 cut(s) 657, 687, 1633
Eco130I CCWWGG 1 cut(s) 1121
Eco147I AGGCCT 1 cut(s) 1060
Eco31I GGTCTC 1 cut(s) 659
Eco32I GATATC 1 cut(s) 1163
Eco47I GGWCC 3 cut(s) 444, 1452, 1599
Eco57I CTGAAG 2 cut(s) 510, 1554
Eco81I CCTNAGG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 1148
EcoNI CCTNNNNNAGG 1 cut(s) 1594
EcoO109I RGGNCCY 2 cut(s) 444, 1599
EcoO65I GGTNACC 1 cut(s) 1148
EcoRII CCWGG 6 cut(s) 1060, 1300, 1351, 1454, 1480, 1492
EcoRV GATATC 1 cut(s) 1163
EcoT14I CCWWGG 1 cut(s) 1121
ErhI CCWWGG 1 cut(s) 1121
Esp3I CGTCTC 1 cut(s) 1461
FalI AAGNNNNNCTT 2 cut(s) 1612, 1644
FaqI GGGAC 1 cut(s) 1585
FauI CCCGC 2 cut(s) 52, 1684
Fnu4HI GCNGC 1 cut(s) 945
FokI GGATG 2 cut(s) 353, 736
Fsp4HI GCNGC 1 cut(s) 945
FspBI CTAG 5 cut(s) 498, 561, 1166, 1377, 1769
GlaI GCGC 2 cut(s) 1503, 1690
GluI GCNGC 1 cut(s) 945
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 1060, 1477
HapII CCGG 2 cut(s) 1157, 1274
HhaI GCGC 2 cut(s) 1504, 1691
Hin6I GCGC 2 cut(s) 1502, 1689
HinP1I GCGC 2 cut(s) 1502, 1689
HincII GTYRAC 2 cut(s) 952, 1489
HindII GTYRAC 2 cut(s) 952, 1489
HindIII AAGCTT 3 cut(s) 522, 572, 1088
HpaII CCGG 2 cut(s) 1157, 1274
HphI GGTGA 7 cut(s) 50, 251, 671, 1256, 1427, 1665, 1778
Hpy166II GTNNAC 7 cut(s) 457, 566, 952, 965, 1309, 1388, 1489
Hpy188I TCNGA 9 cut(s) 10, 247, 361, 601, 1078, 1257, 1414, 1595, 1609
Hpy188III TCNNGA 5 cut(s) 52, 632, 1025, 1070, 1166
Hpy8I GTNNAC 7 cut(s) 457, 566, 952, 965, 1309, 1388, 1489
HpyAV CCTTC 6 cut(s) 284, 434, 679, 1590, 1600, 1634
HpyCH4IV ACGT 2 cut(s) 783, 982
HpyCH4V TGCA 6 cut(s) 201, 377, 409, 611, 845, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 613, 1096, 1401
HpyF3I CTNAG 3 cut(s) 161, 811, 1077
HpySE526I ACGT 2 cut(s) 783, 982
HspAI GCGC 2 cut(s) 1502, 1689
Kzo9I GATC 4 cut(s) 796, 1111, 1183, 1369
LguI GCTCTTC 1 cut(s) 687
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 3 cut(s) 331, 862, 1441
MaeI CTAG 5 cut(s) 498, 561, 1166, 1377, 1769
MaeII ACGT 2 cut(s) 783, 982
MaeIII GTNAC 6 cut(s) 326, 367, 535, 935, 1148, 1544
MalI GATC 4 cut(s) 798, 1113, 1185, 1371
MboI GATC 4 cut(s) 796, 1111, 1183, 1369
MboII GAAGA 8 cut(s) 320, 615, 674, 674, 712, 1241, 1620, 1632
MfeI CAATTG 2 cut(s) 889, 1362
MflI RGATCY 1 cut(s) 1369
MhlI GDGCHC 4 cut(s) 789, 961, 1069, 1351
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 4 cut(s) 786, 1034, 1688, 1772
MroXI GAANNNNTTC 2 cut(s) 1251, 1627
MseI TTAA 6 cut(s) 90, 489, 840, 1055, 1128, 1224
MslI CAYNNNNRTG 3 cut(s) 120, 171, 414
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 2 cut(s) 1157, 1274
MspR9I CCNGG 8 cut(s) 1062, 1158, 1274, 1302, 1353, 1456, 1482, 1494
MunI CAATTG 2 cut(s) 889, 1362
Mva1269I GAATGC 2 cut(s) 61, 1140
MvaI CCWGG 6 cut(s) 1062, 1302, 1353, 1456, 1482, 1494
MvnI CGCG 2 cut(s) 1440, 1691
MwoI GCNNNNNNNGC 3 cut(s) 613, 1096, 1401
NciI CCSGG 2 cut(s) 1158, 1274
NdeII GATC 4 cut(s) 796, 1111, 1183, 1369
NlaIV GGNNCC 4 cut(s) 1350, 1382, 1416, 1601
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 3 cut(s) 205, 611, 620
PaeI GCATGC 2 cut(s) 205, 611
PceI AGGCCT 1 cut(s) 1060
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 1786
PctI GAATGC 2 cut(s) 61, 1140
PdmI GAANNNNTTC 2 cut(s) 1251, 1627
PflMI CCANNNNNTGG 1 cut(s) 1526
PfoI TCCNGGA 1 cut(s) 1300
PkrI GCNGC 1 cut(s) 946
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 2 cut(s) 444, 1599
PshBI ATTAAT 1 cut(s) 840
Psp5II RGGWCCY 2 cut(s) 444, 1599
Psp6I CCWGG 6 cut(s) 1060, 1300, 1351, 1454, 1480, 1492
PspEI GGTNACC 1 cut(s) 1148
PspGI CCWGG 6 cut(s) 1060, 1300, 1351, 1454, 1480, 1492
PspN4I GGNNCC 4 cut(s) 1350, 1382, 1416, 1601
PspPI GGNCC 4 cut(s) 444, 1452, 1475, 1599
PspPPI RGGWCCY 2 cut(s) 444, 1599
PsuI RGATCY 1 cut(s) 1369
PvuII CAGCTG 1 cut(s) 1037
RseI CAYNNNNRTG 3 cut(s) 120, 171, 414
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 6 cut(s) 90, 489, 840, 1055, 1128, 1224
SatI GCNGC 1 cut(s) 945
Sau3AI GATC 4 cut(s) 796, 1111, 1183, 1369
Sau96I GGNCC 4 cut(s) 444, 1452, 1475, 1599
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 8 cut(s) 1062, 1158, 1274, 1302, 1353, 1456, 1482, 1494
SduI GDGCHC 4 cut(s) 789, 961, 1069, 1351
SfaNI GCATC 3 cut(s) 331, 862, 1441
SinI GGWCC 3 cut(s) 444, 1452, 1599
SmiMI CAYNNNNRTG 3 cut(s) 120, 171, 414
SmlI CTYRAG 2 cut(s) 575, 630
SmoI CTYRAG 2 cut(s) 575, 630
SphI GCATGC 2 cut(s) 205, 611
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 5 cut(s) 59, 710, 1118, 1438, 1691
SspMI CTAG 5 cut(s) 498, 561, 1166, 1377, 1769
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 8 cut(s) 1060, 1156, 1272, 1300, 1351, 1454, 1480, 1492
StyI CCWWGG 1 cut(s) 1121
TaiI ACGT 2 cut(s) 786, 985
TaqI TCGA 6 cut(s) 51, 234, 258, 1071, 1293, 1618
Tru1I TTAA 6 cut(s) 90, 489, 840, 1055, 1128, 1224
Tru9I TTAA 6 cut(s) 90, 489, 840, 1055, 1128, 1224
TscAI CASTG 3 cut(s) 157, 599, 961
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 1 cut(s) 535
TspGWI ACGGA 1 cut(s) 1099
TspRI CASTG 3 cut(s) 157, 599, 961
Van91I CCANNNNNTGG 1 cut(s) 1526
VpaK11BI GGWCC 3 cut(s) 444, 1452, 1599
VspI ATTAAT 1 cut(s) 840
XagI CCTNNNNNAGG 1 cut(s) 1594
XapI RAATTY 2 cut(s) 13, 1295
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 3 cut(s) 205, 611, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmnI GAANNNNTTC 2 cut(s) 1251, 1627
XspI CTAG 5 cut(s) 498, 561, 1166, 1377, 1769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.