AT1G67410

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008092
Physical Location & Seq
Reverse (-)
25251166 .. 25253682
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67410.2

Sequence Viewer

Length: 1293 bp
ATGTACGGCAAAACAATATGTACAATCGTCTTCTTCATCTTCCTCGTTGCTTCATTCTCAATCTACATGGGAACCGTCGATCCAAGACCTTACTTCTACCTCCTCCAATCCCAACCCAATGGAGCTTCTTCTCCTTGTAGCTCCTCTGGAAAACCTCTCCGTGTCTTCATGTACGATCTCCCACGAAAGTTTAATATCGCGATGATGGATCCTCATAGCTCAGATGTTGAGCCTATCACAGGGAAGAATTTACCTTCTTGGCCTCAGACTTCTGGGATTAAAAGACAACATAGCGTTGAGTATTGGCTTATGGCTTCTCTTCTTAACGGTGGTGAGGATGAGAATGAAGCAATTAGGGTTTTTGATCCGGATTTGGCGGATGTGTTTTATGTTCCTTTTTTCTCTTCGTTGAGTTTTAATACTCATGGGAAGAACATGACTGATCCAGATACTGAATTTGATCGGCTATTACAGGTTGAGTTAATGGAGTTTCTTGAGAATTCGAAGTATTGGAATCGTTCAGGAGGTAAAGATCATGTGATTCCGATGACACATCCTAATGCTTTCAGATTTCTAAGGCAACAAGTGAATGCGTCGATTCTCATTGTTGTGGATTTTGGGCGTTATTCTAAAGACATGGCACGTTTAAGTAAAGACGTAGTTTCTCCTTATGTACATGTTGTTGAGTCTTTGAATGAGGAGGGCGATGATGGTATGGGAGATCCTTTTGAGGCTCGTACAACGCTTCTTTACTTTCGTGGGAATACAGTTAGGAAAGATGAAGGTAAAATTCGTCTGAGGTTGGAGAAGTTATTAGCTGGTAACTCTGATGTTCACTTTGAGAAAAGTGTAGCTACTACACAAAACATCAAAGTGTCTACGGAAGGGATGAGATCTTCTAAGTTTTGTCTGCATCCAGCTGGAGACACTCCATCTTCATGCCGGTTATTTGATGCCATTGTCAGTCACTGCATTCCGGTCATCATAAGCGACAAAATCGAGCTGCCCTTTGAAGATGAAATAGACTACTCGGAATTCTCACTGTTTTTCTCAATAAAAGAGTCGCTTGAACCGGGCTACATCCTCAACAACCTCCGCCAATTTCCCAAGGAGAAATGGCTGGAAATGTGGAAACGACTGAAGAACGTATCTCATCACTTTGAGTTCCAGTACCCGCCAAAGAGAGAAGATGCAGTAAACATGTTGTGGAGACAAGTGAAACACAAGATCCCTTATGTCAAGCTCGCTGTACATAGAAACCGGAGGTTGAAAGTCCCTGATTGGTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

430

Amino Acids

49.76

Weight (kDa)

6.68

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 51 - 290 4.6e-48 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 878
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 3 cut(s) 377, 1096, 1175
AclWI GGATC 7 cut(s) 74, 203, 216, 359, 437, 716, 1222
AcsI RAATTY 5 cut(s) 247, 455, 499, 789, 1034
AcuI CTGAAG 1 cut(s) 1160
AfaI GTAC 7 cut(s) 5, 22, 173, 675, 739, 1172, 1251
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 676, 1200
AgsI TTSAA 4 cut(s) 694, 1013, 1070, 1270
AloI GAACNNNNNNTCC 2 cut(s) 64, 96
AluBI AGCT 8 cut(s) 125, 141, 219, 818, 854, 920, 1003, 1243
AluI AGCT 8 cut(s) 125, 141, 219, 818, 854, 920, 1003, 1243
Alw26I GTCTC 2 cut(s) 918, 1204
AlwI GGATC 7 cut(s) 74, 203, 216, 359, 437, 716, 1222
AlwNI CAGNNNCTG 2 cut(s) 452, 969
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 1003
ApoI RAATTY 5 cut(s) 247, 455, 499, 789, 1034
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 503
BamHI GGATCC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 22, 157
BbvI GCAGC 1 cut(s) 990
BccI CCATC 3 cut(s) 199, 704, 940
BceAI ACGGC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 2 cut(s) 918, 1204
BglII AGATCT 1 cut(s) 893
BisI GCNGC 1 cut(s) 1004
BlsI GCNGC 1 cut(s) 1005
Bme1390I CCNGG 1 cut(s) 1074
BmiI GGNNCC 2 cut(s) 73, 210
BmrFI CCNGG 1 cut(s) 1074
BmsI GCATC 3 cut(s) 922, 943, 1180
BpiI GAAGAC 2 cut(s) 22, 157
BpmI CTGGAG 1 cut(s) 942
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 1074
BsaJI CCNNGG 1 cut(s) 1107
BsaWI WCCGGW 3 cut(s) 367, 976, 1260
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 942
Bse1I ACTGG 1 cut(s) 1168
BseAI TCCGGA 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 1107
BseGI GGATG 6 cut(s) 343, 385, 553, 894, 913, 1080
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 3 cut(s) 234, 278, 788
BseNI ACTGG 1 cut(s) 1168
BseRI GAGGAG 3 cut(s) 92, 133, 713
BseXI GCAGC 1 cut(s) 990
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 5 cut(s) 368, 943, 977, 1073, 1261
BslFI GGGAC 1 cut(s) 1259
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 918, 1204
BsmFI GGGAC 1 cut(s) 1259
BsmI GAATGC 2 cut(s) 595, 972
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 503
Bsp13I TCCGGA 1 cut(s) 367
Bsp1407I TGTACA 3 cut(s) 20, 673, 1249
Bsp68I TCGCGA 1 cut(s) 200
BspACI CCGC 3 cut(s) 377, 1096, 1175
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 3 cut(s) 233, 277, 789
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 73, 210
BspPI GGATC 7 cut(s) 74, 203, 216, 359, 437, 716, 1222
BspT104I TTCGAA 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 942
BsrGI TGTACA 3 cut(s) 20, 673, 1249
BsrI ACTGG 1 cut(s) 1168
BssAI RCCGGY 1 cut(s) 942
BssECI CCNNGG 1 cut(s) 1107
BssT1I CCWWGG 1 cut(s) 1107
Bst4CI ACNGT 4 cut(s) 76, 329, 769, 1044
Bst6I CTCTTC 2 cut(s) 324, 409
BstAUI TGTACA 3 cut(s) 20, 673, 1249
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 1245
BstDEI CTNAG 5 cut(s) 220, 264, 575, 797, 900
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 6 cut(s) 343, 385, 553, 894, 913, 1080
BstFNI CGCG 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 918, 1204
BstNSI RCATGY 2 cut(s) 680, 1204
BstSCI CCNGG 1 cut(s) 1072
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 990
BstV2I GAAGAC 2 cut(s) 22, 157
BstX2I RGATCY 4 cut(s) 208, 721, 893, 1227
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 4 cut(s) 208, 721, 893, 1227
BsuRI GGCC 1 cut(s) 262
BtgZI GCGATG 2 cut(s) 215, 720
BtsCI GGATG 6 cut(s) 343, 385, 553, 894, 913, 1080
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 2 cut(s) 967, 1040
BtuMI TCGCGA 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 1245
CaiI CAGNNNCTG 2 cut(s) 452, 969
Cfr10I RCCGGY 1 cut(s) 942
CseI GACGC 1 cut(s) 582
Csp6I GTAC 7 cut(s) 4, 21, 172, 674, 738, 1171, 1250
CviAII CATG 9 cut(s) 67, 169, 425, 436, 536, 637, 677, 939, 1201
CviQI GTAC 7 cut(s) 4, 21, 172, 674, 738, 1171, 1250
DdeI CTNAG 5 cut(s) 220, 264, 575, 797, 900
Eam1104I CTCTTC 2 cut(s) 324, 409
EarI CTCTTC 2 cut(s) 324, 409
EciI GGCGGA 2 cut(s) 392, 1085
Eco130I CCWWGG 1 cut(s) 1107
Eco57I CTGAAG 1 cut(s) 1160
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 499, 1034
EcoT14I CCWWGG 1 cut(s) 1107
ErhI CCWWGG 1 cut(s) 1107
FaeI CATG 9 cut(s) 70, 172, 428, 439, 539, 640, 680, 942, 1204
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 1 cut(s) 1259
FatI CATG 9 cut(s) 66, 168, 424, 435, 535, 636, 676, 938, 1200
FauI CCCGC 1 cut(s) 1182
FblI GTMKAC 1 cut(s) 878
Fnu4HI GCNGC 1 cut(s) 1004
FokI GGATG 6 cut(s) 350, 392, 540, 900, 901, 1067
Fsp4HI GCNGC 1 cut(s) 1004
GluI GCNGC 1 cut(s) 1004
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 1 cut(s) 262
HapII CCGG 5 cut(s) 368, 943, 977, 1073, 1261
HgaI GACGC 1 cut(s) 582
Hin1II CATG 9 cut(s) 70, 172, 428, 439, 539, 640, 680, 942, 1204
HinfI GANTC 5 cut(s) 514, 541, 598, 686, 1061
HpaII CCGG 5 cut(s) 368, 943, 977, 1073, 1261
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 835, 879, 1198
Hpy188I TCNGA 7 cut(s) 223, 267, 546, 569, 798, 829, 1033
Hpy188III TCNNGA 6 cut(s) 147, 199, 368, 446, 494, 522
Hpy8I GTNNAC 3 cut(s) 835, 879, 1198
Hpy99I CGWCG 2 cut(s) 80, 598
HpyAV CCTTC 3 cut(s) 264, 776, 878
HpyCH4III ACNGT 4 cut(s) 76, 329, 769, 1044
HpyCH4IV ACGT 3 cut(s) 643, 657, 1146
HpyCH4V TGCA 3 cut(s) 913, 972, 1193
HpyF3I CTNAG 5 cut(s) 220, 264, 575, 797, 900
HpySE526I ACGT 3 cut(s) 643, 657, 1146
Hsp92II CATG 9 cut(s) 70, 172, 428, 439, 539, 640, 680, 942, 1204
Kpn2I TCCGGA 1 cut(s) 367
LmnI GCTCC 2 cut(s) 122, 146
Lsp1109I GCAGC 1 cut(s) 990
LweI GCATC 3 cut(s) 922, 943, 1180
MaeII ACGT 3 cut(s) 643, 657, 1146
MaeIII GTNAC 2 cut(s) 821, 965
MflI RGATCY 4 cut(s) 208, 721, 893, 1227
MluCI AATT 7 cut(s) 247, 351, 455, 499, 789, 1034, 1100
MlyI GAGTC 2 cut(s) 695, 1070
MmeI TCCRAC 1 cut(s) 783
MroI TCCGGA 1 cut(s) 367
MseI TTAA 6 cut(s) 192, 279, 324, 417, 482, 647
MslI CAYNNNNRTG 4 cut(s) 558, 608, 872, 937
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 5 cut(s) 368, 943, 977, 1073, 1261
MspR9I CCNGG 1 cut(s) 1074
Mva1269I GAATGC 2 cut(s) 595, 972
MvnI CGCG 1 cut(s) 200
NciI CCSGG 1 cut(s) 1074
NlaIII CATG 9 cut(s) 70, 172, 428, 439, 539, 640, 680, 942, 1204
NlaIV GGNNCC 2 cut(s) 73, 210
NmuCI GTSAC 1 cut(s) 965
NruI TCGCGA 1 cut(s) 200
NspI RCATGY 2 cut(s) 680, 1204
NspV TTCGAA 1 cut(s) 503
PciI ACATGT 2 cut(s) 676, 1200
PctI GAATGC 2 cut(s) 595, 972
PfeI GAWTC 3 cut(s) 514, 541, 598
PkrI GCNGC 1 cut(s) 1005
PleI GAGTC 2 cut(s) 694, 1069
PpsI GAGTC 2 cut(s) 694, 1069
PscI ACATGT 2 cut(s) 676, 1200
PspN4I GGNNCC 2 cut(s) 73, 210
PstNI CAGNNNCTG 2 cut(s) 452, 969
PsuI RGATCY 4 cut(s) 208, 721, 893, 1227
PvuII CAGCTG 1 cut(s) 920
RruI TCGCGA 1 cut(s) 200
RsaI GTAC 7 cut(s) 5, 22, 173, 675, 739, 1172, 1251
RsaNI GTAC 7 cut(s) 4, 21, 172, 674, 738, 1171, 1250
RseI CAYNNNNRTG 4 cut(s) 558, 608, 872, 937
SaqAI TTAA 6 cut(s) 192, 279, 324, 417, 482, 647
SatI GCNGC 1 cut(s) 1004
SchI GAGTC 2 cut(s) 695, 1070
ScrFI CCNGG 1 cut(s) 1074
SfaNI GCATC 3 cut(s) 922, 943, 1180
SfuI TTCGAA 1 cut(s) 503
SmiMI CAYNNNNRTG 4 cut(s) 558, 608, 872, 937
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 7 cut(s) 247, 351, 455, 499, 789, 1034, 1100
SsiI CCGC 3 cut(s) 377, 1096, 1175
StyD4I CCNGG 1 cut(s) 1072
StyI CCWWGG 1 cut(s) 1107
TaaI ACNGT 4 cut(s) 76, 329, 769, 1044
TaiI ACGT 3 cut(s) 646, 660, 1149
TaqI TCGA 4 cut(s) 78, 503, 596, 999
TasI AATT 7 cut(s) 247, 351, 455, 499, 789, 1034, 1100
TatI WGTACW 3 cut(s) 20, 673, 1249
TfiI GAWTC 3 cut(s) 514, 541, 598
Tru1I TTAA 6 cut(s) 192, 279, 324, 417, 482, 647
Tru9I TTAA 6 cut(s) 192, 279, 324, 417, 482, 647
TscAI CASTG 2 cut(s) 974, 1047
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 1 cut(s) 1003
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 7 cut(s) 25, 42, 157, 360, 795, 927, 1032
TspGWI ACGGA 2 cut(s) 149, 896
TspRI CASTG 2 cut(s) 974, 1047
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 5 cut(s) 247, 455, 499, 789, 1034
XceI RCATGY 2 cut(s) 680, 1204
XmiI GTMKAC 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.