FvH4_4g23900

arabinosyltransferase ARAD1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
26220274 .. 26223821
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23900.t1

Sequence Viewer

Length: 1203 bp
ATGATAGTAACTAACGTCCGATCAGATCTCGGAAAAATAAAAATGTACCGGAAAGCCGCAATTGGCTTAACCTTCGCTCTGCTCCTCCTCATCTCCTACTCCATCTTCATCGGCACAGTCGATTTGCGATCCTACTTCATCCCTCTCCTTAAATCCTCACCGTTGGCTCCTCAGTCGCTATGCGCCACCGGCCCGCCGCTCAAGGTGTTCATGTACGATCTGCCGCGGCGGTTCAACGTCGGGATGCTGAACCGGAAGAGCGCGGAGGAGGCGCCGGTGACGGCGAGGGAGTGGCCGCCGTGGCCGAGGAACTCCGGGCTGAAGAAGCAGCACAGTGTGGAGTACTGGATGATGGGGTCGGTTCTGTGGGAAGGGAACGGCGGCGAGGGGAGTGAGGTTGTTAGGGTTTCTGATCCGGAGGTGGCTGATGCGTTCTTCGTGCCGTTTTTCTCTTCGTTGAGTTTTAATACTCACGGTCATAATATGAATGATCCCGAGACTGAGGTTGATCACCAGTTGCAGATAGATTTAGTGAAACTTTTGCATGAATCCAAGTACTGGAATAGATCTGGGGGCAGAGACCATGTAATCCCTATGACGCATCCCAATGCTTTCAGATTTCTTCGACCACAGATCAATGCATCTATTCAAATTGTTGTGGATTTTGGGCGTTACCCTCATGAAGGCATTGTTCGTGCTAAACTAGCAAAAGTTTTAGCTGGTTATGATGATGTTCACTATGAGCGGAGTGTTGCGACTGGGGAAAACATAAAACTGTCTACACAACGGATGCGTGCATCAAAATTTTGTCTGCACCCTGCTGGAGACACTCCTTCATCTTGTCGTCTTTTTGATGCCATTGTGAGCCACTGCATTCCTGTCATTGTGAGTGATGAAATTGAGCTTCCATTTGAAGATGAACTTGACTACAACCAGTTCTCAGTATTCTTCTCGTTCAAAGAGGCTCTACAACCTGGTTACATGGTTAATGAGCTCCGGAAATTGTCAAAGGAGAAATGGATGGAAATGTATAGGCATCTTAAGAGCATCTCCCATCATTTTGAGTTCCATTACCCCCCAGAGAAAGAAGATGCAGTCAATATGCTCTGGAGACAGGTAAAGCGCAAGGTTCCTGCAGTTAAACTAGCTGTACATAGAAGCCAGAGGTTGAAAATCCCAGACTGGTGGCGAAGGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

46.16

Weight (kDa)

9.21

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 65 - 230 1.4e-27 Exostosin GT47 domain
Exostosin_GT47 PF03016 227 - 331 1.9e-29 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 558
AccBSI CCGCTC 2 cut(s) 199, 745
AccI GTMKAC 1 cut(s) 779
AccII CGCG 2 cut(s) 226, 263
AccIII TCCGGA 2 cut(s) 415, 996
AclWI GGATC 3 cut(s) 123, 407, 485
AcoI YGGCCR 2 cut(s) 293, 302
AcsI RAATTY 1 cut(s) 803
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 5 cut(s) 47, 215, 344, 557, 1152
AfiI CCNNNNNNNGG 2 cut(s) 558, 683
AflII CTTAAG 1 cut(s) 1040
AgsI TTSAA 5 cut(s) 235, 650, 914, 958, 1171
AjnI CCWGG 1 cut(s) 973
AluBI AGCT 4 cut(s) 719, 904, 994, 1148
AluI AGCT 4 cut(s) 719, 904, 994, 1148
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 4 cut(s) 491, 573, 819, 1105
AlwI GGATC 3 cut(s) 123, 407, 485
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 2 cut(s) 415, 996
AoxI GGCC 3 cut(s) 190, 293, 302
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 803
AspLEI GCGC 4 cut(s) 185, 263, 274, 1125
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 150, 289, 503
AvaI CYCGRG 1 cut(s) 494
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 340
BccI CCATC 4 cut(s) 110, 346, 1015, 1062
BceAI ACGGC 4 cut(s) 283, 297, 394, 427
BciT130I CCWGG 1 cut(s) 975
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 491, 573, 819, 1105
BfaI CTAG 2 cut(s) 704, 1145
BfmI CTRYAG 1 cut(s) 1134
BfoI RGCGCY 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 301
BglII AGATCT 2 cut(s) 25, 566
BisI GCNGC 7 cut(s) 57, 197, 224, 227, 296, 329, 382
BlsI GCNGC 7 cut(s) 58, 198, 225, 228, 297, 330, 383
BmcAI AGTACT 2 cut(s) 344, 557
Bme1390I CCNGG 2 cut(s) 316, 975
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 168, 273, 1131
BmrFI CCNGG 2 cut(s) 316, 975
BmrI ACTGGG 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 768
BpmI CTGGAG 2 cut(s) 843, 1129
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 224, 299, 305
BsaWI WCCGGW 4 cut(s) 48, 252, 415, 996
Bsc4I CCNNNNNNNGG 2 cut(s) 558, 683
Bse118I RCCGGY 2 cut(s) 188, 274
Bse1I ACTGG 6 cut(s) 350, 514, 563, 763, 934, 1187
BseAI TCCGGA 2 cut(s) 415, 996
BseBI CCWGG 1 cut(s) 975
BseDI CCNNGG 3 cut(s) 224, 299, 305
BseGI GGATG 6 cut(s) 138, 249, 354, 601, 795, 1026
BseLI CCNNNNNNNGG 2 cut(s) 558, 683
BseMII CTCAG 3 cut(s) 185, 492, 954
BseNI ACTGG 6 cut(s) 350, 514, 563, 763, 934, 1187
BseRI GAGGAG 4 cut(s) 74, 77, 159, 281
BseXI GCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 2 cut(s) 226, 263
BshFI GGCC 3 cut(s) 192, 295, 304
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 7 cut(s) 49, 189, 253, 275, 315, 416, 997
BslI CCNNNNNNNGG 2 cut(s) 558, 683
BsmAI GTCTC 4 cut(s) 491, 573, 819, 1105
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 3 cut(s) 192, 295, 304
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 996
Bsp13I TCCGGA 2 cut(s) 415, 996
Bsp1407I TGTACA 1 cut(s) 1150
Bsp143I GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
BspANI GGCC 3 cut(s) 192, 295, 304
BspCNI CTCAG 3 cut(s) 184, 493, 953
BspEI TCCGGA 2 cut(s) 415, 996
BspFNI CGCG 2 cut(s) 226, 263
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 3 cut(s) 168, 273, 1131
BspMAI CTGCAG 1 cut(s) 1138
BspPI GGATC 3 cut(s) 123, 407, 485
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 1040
BspTNI GGTCTC 1 cut(s) 573
BsrBI CCGCTC 2 cut(s) 199, 745
BsrFI RCCGGY 2 cut(s) 188, 274
BsrGI TGTACA 1 cut(s) 1150
BsrI ACTGG 6 cut(s) 350, 514, 563, 763, 934, 1187
BssAI RCCGGY 2 cut(s) 188, 274
BssECI CCNNGG 3 cut(s) 224, 299, 305
BssMI GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
BssNI GRCGYC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 5 cut(s) 118, 162, 335, 476, 777
Bst6I CTCTTC 2 cut(s) 251, 457
BstACI GRCGYC 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 194, 795
BstDEI CTNAG 3 cut(s) 171, 501, 940
BstDSI CCRYGG 2 cut(s) 224, 299
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 6 cut(s) 138, 249, 354, 601, 795, 1026
BstFNI CGCG 2 cut(s) 226, 263
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 4 cut(s) 185, 263, 274, 1125
BstKTI GATC 9 cut(s) 23, 28, 131, 220, 415, 493, 511, 569, 636
BstMAI GTCTC 4 cut(s) 491, 573, 819, 1105
BstMBI GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
BstMWI GCNNNNNNNGC 5 cut(s) 189, 269, 301, 325, 704
BstNI CCWGG 1 cut(s) 975
BstSCI CCNGG 2 cut(s) 314, 973
BstSFI CTRYAG 1 cut(s) 1134
BstUI CGCG 2 cut(s) 226, 263
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 25, 566
BstXI CCANNNNNNTGG 1 cut(s) 1185
BstYI RGATCY 2 cut(s) 25, 566
BsuRI GGCC 3 cut(s) 192, 295, 304
BtgI CCRYGG 2 cut(s) 224, 299
BtsCI GGATG 6 cut(s) 138, 249, 354, 601, 795, 1026
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 2 cut(s) 340, 868
Cac8I GCNNGC 2 cut(s) 194, 795
CciI TCATGA 1 cut(s) 679
CfoI GCGC 4 cut(s) 185, 263, 274, 1125
Cfr10I RCCGGY 2 cut(s) 188, 274
Cfr13I GGNCC 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 227
CseI GACGC 1 cut(s) 607
CsiI ACCWGGT 1 cut(s) 973
Csp6I GTAC 5 cut(s) 46, 214, 343, 556, 1151
CviAII CATG 5 cut(s) 211, 545, 584, 680, 982
CviQI GTAC 5 cut(s) 46, 214, 343, 556, 1151
DdeI CTNAG 3 cut(s) 171, 501, 940
DinI GGCGCC 1 cut(s) 273
DpnI GATC 9 cut(s) 22, 27, 130, 219, 414, 492, 510, 568, 635
DpnII GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
DraIII CACNNNGTG 1 cut(s) 337
EaeI YGGCCR 2 cut(s) 293, 302
Eam1104I CTCTTC 2 cut(s) 251, 457
EarI CTCTTC 2 cut(s) 251, 457
Ecl136II GAGCTC 1 cut(s) 994
Eco24I GRGCYC 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 994
Eco57I CTGAAG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 994
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 973
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 996
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
FaeI CATG 5 cut(s) 214, 548, 587, 683, 985
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FatI CATG 5 cut(s) 210, 544, 583, 679, 981
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 7 cut(s) 57, 197, 224, 227, 296, 329, 382
FokI GGATG 6 cut(s) 125, 256, 361, 588, 802, 1033
FriOI GRGCYC 1 cut(s) 996
Fsp4HI GCNGC 7 cut(s) 57, 197, 224, 227, 296, 329, 382
FspBI CTAG 2 cut(s) 704, 1145
GlaI GCGC 4 cut(s) 184, 262, 273, 1124
GluI GCNGC 7 cut(s) 57, 197, 224, 227, 296, 329, 382
GsuI CTGGAG 2 cut(s) 843, 1129
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 3 cut(s) 192, 295, 304
HapII CCGG 7 cut(s) 49, 189, 253, 275, 315, 416, 997
HgaI GACGC 1 cut(s) 607
HhaI GCGC 4 cut(s) 185, 263, 274, 1125
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 5 cut(s) 214, 548, 587, 683, 985
Hin6I GCGC 4 cut(s) 183, 261, 272, 1123
HinP1I GCGC 4 cut(s) 183, 261, 272, 1123
HinfI GANTC 1 cut(s) 548
HpaII CCGG 7 cut(s) 49, 189, 253, 275, 315, 416, 997
HphI GGTGA 3 cut(s) 150, 289, 503
Hpy166II GTNNAC 2 cut(s) 736, 780
Hpy188I TCNGA 5 cut(s) 20, 25, 32, 412, 617
Hpy188III TCNNGA 6 cut(s) 241, 416, 494, 680, 997, 1108
Hpy8I GTNNAC 2 cut(s) 736, 780
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 5 cut(s) 82, 365, 677, 843, 1185
HpyCH4III ACNGT 5 cut(s) 118, 162, 335, 476, 777
HpyCH4IV ACGT 2 cut(s) 15, 237
HpyCH4V TGCA 8 cut(s) 520, 544, 641, 797, 814, 873, 1094, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 189, 269, 301, 325, 704
HpyF3I CTNAG 3 cut(s) 171, 501, 940
HpySE526I ACGT 2 cut(s) 15, 237
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 5 cut(s) 214, 548, 587, 683, 985
HspAI GCGC 4 cut(s) 183, 261, 272, 1123
KasI GGCGCC 1 cut(s) 271
Kpn2I TCCGGA 2 cut(s) 415, 996
Ksp22I TGATCA 1 cut(s) 508
KspI CCGCGG 1 cut(s) 227
Kzo9I GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 3 cut(s) 87, 172, 999
Lsp1109I GCAGC 1 cut(s) 340
MabI ACCWGGT 1 cut(s) 973
MaeI CTAG 2 cut(s) 704, 1145
MaeII ACGT 2 cut(s) 15, 237
MaeIII GTNAC 4 cut(s) 7, 277, 671, 977
MalI GATC 9 cut(s) 22, 27, 130, 219, 414, 492, 510, 568, 635
MbiI CCGCTC 2 cut(s) 199, 745
MboI GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
MboII GAAGA 9 cut(s) 97, 268, 334, 427, 444, 614, 926, 940, 1100
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 2 cut(s) 25, 566
MhlI GDGCHC 1 cut(s) 996
MluCI AATT 5 cut(s) 60, 651, 803, 897, 1001
Mly113I GGCGCC 1 cut(s) 272
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 2 cut(s) 415, 996
MseI TTAA 6 cut(s) 68, 150, 465, 987, 1041, 1140
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 226
MspCI CTTAAG 1 cut(s) 1040
MspI CCGG 7 cut(s) 49, 189, 253, 275, 315, 416, 997
MspR9I CCNGG 2 cut(s) 316, 975
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 873
MvaI CCWGG 1 cut(s) 975
MvnI CGCG 2 cut(s) 226, 263
MwoI GCNNNNNNNGC 5 cut(s) 189, 269, 301, 325, 704
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 1 cut(s) 316
NdeII GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
NlaIII CATG 5 cut(s) 214, 548, 587, 683, 985
NlaIV GGNNCC 3 cut(s) 168, 273, 1131
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 643
PagI TCATGA 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 873
PfeI GAWTC 1 cut(s) 548
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 7 cut(s) 58, 198, 225, 228, 297, 330, 383
PluTI GGCGCC 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 973
PspGI CCWGG 1 cut(s) 973
PspN4I GGNNCC 3 cut(s) 168, 273, 1131
PspPI GGNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 1138
PsuI RGATCY 2 cut(s) 25, 566
RsaI GTAC 5 cut(s) 47, 215, 344, 557, 1152
RsaNI GTAC 5 cut(s) 46, 214, 343, 556, 1151
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 996
SacII CCGCGG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 6 cut(s) 68, 150, 465, 987, 1041, 1140
SatI GCNGC 7 cut(s) 57, 197, 224, 227, 296, 329, 382
Sau3AI GATC 9 cut(s) 20, 25, 128, 217, 412, 490, 508, 566, 633
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 2 cut(s) 344, 557
ScrFI CCNGG 2 cut(s) 316, 975
SduI GDGCHC 1 cut(s) 996
SexAI ACCWGGT 1 cut(s) 973
SfcI CTRYAG 1 cut(s) 1134
SfiI GGCCNNNNNGGCC 1 cut(s) 301
SfoI GGCGCC 1 cut(s) 273
Sfr303I CCGCGG 1 cut(s) 227
SgrAI CRCCGGYG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 2 cut(s) 200, 1040
SmoI CTYRAG 2 cut(s) 200, 1040
Sse9I AATT 5 cut(s) 60, 651, 803, 897, 1001
SspDI GGCGCC 1 cut(s) 271
SspMI CTAG 2 cut(s) 704, 1145
SstI GAGCTC 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 314, 973
TaaI ACNGT 5 cut(s) 118, 162, 335, 476, 777
TaiI ACGT 2 cut(s) 18, 240
TaqI TCGA 2 cut(s) 120, 625
TasI AATT 5 cut(s) 60, 651, 803, 897, 1001
TatI WGTACW 3 cut(s) 342, 555, 1150
TauI GCSGC 6 cut(s) 59, 199, 226, 229, 298, 384
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 6 cut(s) 68, 150, 465, 987, 1041, 1140
Tru9I TTAA 6 cut(s) 68, 150, 465, 987, 1041, 1140
TscAI CASTG 2 cut(s) 340, 875
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 9 cut(s) 97, 127, 199, 500, 561, 696, 825, 909, 933
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 2 cut(s) 340, 875
Van91I CCANNNNNTGG 1 cut(s) 558
Vha464I CTTAAG 1 cut(s) 1040
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 2 cut(s) 704, 1145
ZrmI AGTACT 2 cut(s) 344, 557
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.