Rh4DG304500

arabinosyltransferase ARAD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008092
Physical Location & Seq
Reverse (-)
52676908 .. 52680376
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG304500.1

Sequence Viewer

Length: 1050 bp
ATGTACCGGAAAGCTGCAGTTGCCCTAACCTTCGCTATACTACTCCTCATCACCTACTCCATCTTCATCGGCACCGTCGATTTGCGATCCTACTTCATCCCGCTCCTGCAATCCTCACCGTTGGGTACACAGTCGCTATGTGCGACCGGTCCGCCGCTCAAGGTGTTCATGTACGATCTGCCGCGGCGGTTCAACGTGGGGATGCTGAACCGGAAAAGCAGGGAGGAGGCGCCGGTGACGGCGAGGGAGTGGCCGCCGTGGCCGGGGCACTCCGGGCTGAAGAAGCAGCATAGTGTGGAGTACTGGATGATGGGGTCGGTTTTGTGGGAAGGGAATGGCGGCGATGGGAGTGAGGTGGTTAGGGTTTTTGATCCCGAAGCGGCCGATGCGTTCTTTGTGCCGTTTTTCTCTTCGTTGAGTTTTAATACTCACGGGCATAATATGAACGATCCGGAGACTGAGGTTGATCACCAATTGCAGATAGATTTAATGAAACTCTTGCACGAATCCAAGTACTGGAATAGATCTGGGGGCAGAGACCATGTAATCCCTTTGACGCATCCCAATGCCTTCAGATTTCTTCGACCACAAGTCAATGCATCTATTCAAATTGTTGTGGATTTTGGCCGGTACCCTCATGTCATGTCAAATCTGAGCAAAGATGTGGTCACCCCATATGTACATGTTGTGGATTCTTTTAAAAATGATAACCGTTCAGATCCATATGAGTCCCGCACTACGCTTCTTTTCTTCCAAGGAAGGACATTCAGGAAAGATGAAGGCATTGTCCGTGTTAAACTGGCAAAGGTTTTAGCTGGTTATGATGATGTTCACTATGAGCGGAGTGTTGCGACAGGAGAAAACATAAAATTGGTATGTAGTGGAGTTATAAATCGGTTCATAAGTGGAATTATTTGCATATCTTGGTACTGGTCAGTGAAAATGATTCTTTCTCATCCTCTGTTTCATTTAAATATTTCAATGGTCTTTAGTAATCTTATCAAAGCATCTATCTTAATATCTACATGCATCTTTTATAAGTACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

349

Amino Acids

39.82

Weight (kDa)

8.9

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 51 - 284 1.3e-39 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 890, 1038
Acc65I GGTACC 1 cut(s) 630
AccB1I GGYRCC 3 cut(s) 71, 229, 630
AccB7I CCANNNNNTGG 1 cut(s) 516
AccBSI CCGCTC 3 cut(s) 103, 157, 841
AccII CGCG 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 451
AclWI GGATC 4 cut(s) 81, 365, 443, 713
AcoI YGGCCR 4 cut(s) 251, 260, 381, 625
AcuI CTGAAG 2 cut(s) 299, 556
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 9 cut(s) 5, 127, 173, 302, 515, 632, 681, 929, 1043
AfiI CCNNNNNNNGG 2 cut(s) 263, 516
AflIII ACRYGT 1 cut(s) 682
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 3 cut(s) 193, 608, 981
AhdI GACNNNNNGTC 1 cut(s) 590
AluBI AGCT 2 cut(s) 14, 815
AluI AGCT 2 cut(s) 14, 815
Alw26I GTCTC 2 cut(s) 449, 531
AlwI GGATC 4 cut(s) 81, 365, 443, 713
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 4 cut(s) 251, 260, 381, 625
ApeKI GCWGC 2 cut(s) 14, 286
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
AsiGI ACCGGT 1 cut(s) 146
Asp718I GGTACC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 2 cut(s) 264, 274
AsuHPI GGTGA 5 cut(s) 43, 108, 247, 461, 661
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 270
BanI GGYRCC 3 cut(s) 71, 229, 630
BbvI GCAGC 1 cut(s) 298
BccI CCATC 3 cut(s) 68, 304, 338
BceAI ACGGC 3 cut(s) 241, 255, 385
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 2 cut(s) 264, 274
BcoDI GTCTC 2 cut(s) 449, 531
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 259
BglII AGATCT 1 cut(s) 524
BisI GCNGC 8 cut(s) 15, 155, 182, 185, 254, 287, 340, 381
BlsI GCNGC 8 cut(s) 16, 156, 183, 186, 255, 288, 341, 382
BmcAI AGTACT 2 cut(s) 302, 515
Bme1390I CCNGG 2 cut(s) 264, 274
Bme18I GGWCC 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 73, 231, 632
BmrFI CCNGG 2 cut(s) 264, 274
BmsI GCATC 6 cut(s) 192, 376, 568, 608, 1016, 1038
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 264, 274
BsaHI GRCGYC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 182, 257, 263, 754
BsaWI WCCGGW 4 cut(s) 6, 146, 210, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 516
Bse118I RCCGGY 3 cut(s) 146, 232, 627
Bse1I ACTGG 4 cut(s) 308, 521, 804, 935
BseAI TCCGGA 1 cut(s) 451
BseDI CCNNGG 4 cut(s) 182, 257, 263, 754
BseGI GGATG 5 cut(s) 96, 207, 312, 559, 955
BseLI CCNNNNNNNGG 2 cut(s) 263, 516
BseMII CTCAG 2 cut(s) 450, 644
BseNI ACTGG 4 cut(s) 308, 521, 804, 935
BseRI GAGGAG 2 cut(s) 35, 239
BseSI GKGCMC 1 cut(s) 270
BseX3I CGGCCG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 184
Bsh1285I CGRYCG 2 cut(s) 147, 384
BshFI GGCC 4 cut(s) 253, 262, 383, 627
BshNI GGYRCC 3 cut(s) 71, 229, 630
BshTI ACCGGT 1 cut(s) 146
BsiEI CGRYCG 2 cut(s) 147, 384
BsiSI CCGG 8 cut(s) 7, 147, 211, 233, 263, 273, 452, 628
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 263, 516
BsmAI GTCTC 2 cut(s) 449, 531
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 4 cut(s) 253, 262, 383, 627
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
BspANI GGCC 4 cut(s) 253, 262, 383, 627
BspCNI CTCAG 2 cut(s) 451, 645
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 73, 231, 632
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 4 cut(s) 81, 365, 443, 713
BspT107I GGYRCC 3 cut(s) 71, 229, 630
BspTNI GGTCTC 1 cut(s) 531
BsrBI CCGCTC 3 cut(s) 103, 157, 841
BsrFI RCCGGY 3 cut(s) 146, 232, 627
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 4 cut(s) 308, 521, 804, 935
BssAI RCCGGY 3 cut(s) 146, 232, 627
BssECI CCNNGG 4 cut(s) 182, 257, 263, 754
BssMI GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 754
Bst4CI ACNGT 4 cut(s) 76, 120, 132, 713
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 679
BstDEI CTNAG 2 cut(s) 459, 653
BstDSI CCRYGG 2 cut(s) 182, 257
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 5 cut(s) 96, 207, 312, 559, 955
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 7 cut(s) 89, 178, 373, 451, 469, 527, 721
BstMAI GTCTC 2 cut(s) 449, 531
BstMBI GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
BstMCI CGRYCG 2 cut(s) 147, 384
BstMWI GCNNNNNNNGC 5 cut(s) 20, 259, 274, 283, 386
BstNSI RCATGY 2 cut(s) 686, 1029
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 262, 272
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 524, 718
BstYI RGATCY 2 cut(s) 524, 718
BstZI CGGCCG 1 cut(s) 381
BsuRI GGCC 4 cut(s) 253, 262, 383, 627
BtgI CCRYGG 2 cut(s) 182, 257
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 96, 207, 312, 559, 955
BtsIMutI CAGTG 1 cut(s) 942
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 3 cut(s) 146, 232, 627
Cfr13I GGNCC 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 185
CpoI CGGWCCG 1 cut(s) 149
CseI GACGC 1 cut(s) 565
Csp6I GTAC 9 cut(s) 4, 126, 172, 301, 514, 631, 680, 928, 1042
CspAI ACCGGT 1 cut(s) 146
CspI CGGWCCG 1 cut(s) 149
CviAII CATG 6 cut(s) 169, 542, 638, 643, 683, 1026
CviJI RGCY 7 cut(s) 14, 253, 262, 277, 383, 627, 815
CviKI_1 RGCY 7 cut(s) 14, 253, 262, 277, 383, 627, 815
CviQI GTAC 9 cut(s) 4, 126, 172, 301, 514, 631, 680, 928, 1042
DdeI CTNAG 2 cut(s) 459, 653
DinI GGCGCC 1 cut(s) 231
DpnI GATC 7 cut(s) 88, 177, 372, 450, 468, 526, 720
DpnII GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
DraI TTTAAA 2 cut(s) 700, 972
DriI GACNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 4 cut(s) 251, 260, 381, 625
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 415
Eam1105I GACNNNNNGTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 754
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 381
Eco57I CTGAAG 2 cut(s) 299, 556
Eco91I GGTNACC 1 cut(s) 667
EcoO65I GGTNACC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 754
EcoT22I ATGCAT 2 cut(s) 601, 1031
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 754
FaeI CATG 6 cut(s) 172, 545, 641, 646, 686, 1029
FaqI GGGAC 1 cut(s) 715
FatI CATG 6 cut(s) 168, 541, 637, 642, 682, 1025
FauI CCCGC 2 cut(s) 108, 740
FauNDI CATATG 2 cut(s) 676, 724
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 8 cut(s) 15, 155, 182, 185, 254, 287, 340, 381
FokI GGATG 5 cut(s) 83, 214, 319, 546, 942
Fsp4HI GCNGC 8 cut(s) 15, 155, 182, 185, 254, 287, 340, 381
GlaI GCGC 1 cut(s) 231
GluI GCNGC 8 cut(s) 15, 155, 182, 185, 254, 287, 340, 381
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 4 cut(s) 253, 262, 383, 627
HapII CCGG 8 cut(s) 7, 147, 211, 233, 263, 273, 452, 628
HgaI GACGC 1 cut(s) 565
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 6 cut(s) 172, 545, 641, 646, 686, 1029
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 4 cut(s) 506, 692, 728, 946
HpaII CCGG 8 cut(s) 7, 147, 211, 233, 263, 273, 452, 628
HphI GGTGA 5 cut(s) 43, 108, 247, 461, 661
Hpy166II GTNNAC 3 cut(s) 128, 832, 1044
Hpy188I TCNGA 3 cut(s) 575, 654, 718
Hpy188III TCNNGA 3 cut(s) 374, 452, 769
Hpy8I GTNNAC 3 cut(s) 128, 832, 1044
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 5 cut(s) 40, 323, 580, 753, 773
HpyCH4III ACNGT 4 cut(s) 76, 120, 132, 713
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 7 cut(s) 17, 109, 478, 502, 599, 918, 1029
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 259, 274, 283, 386
HpyF3I CTNAG 2 cut(s) 459, 653
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 6 cut(s) 172, 545, 641, 646, 686, 1029
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 451
KpnI GGTACC 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 466
KspI CCGCGG 1 cut(s) 185
Kzo9I GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 6 cut(s) 192, 376, 568, 608, 1016, 1038
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 235, 667
MalI GATC 7 cut(s) 88, 177, 372, 450, 468, 526, 720
MbiI CCGCTC 3 cut(s) 103, 157, 841
MboI GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
MboII GAAGA 5 cut(s) 55, 292, 402, 572, 742
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 2 cut(s) 524, 718
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 4 cut(s) 473, 609, 869, 909
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 737
MnlI CCTC 9 cut(s) 56, 124, 217, 220, 237, 346, 454, 645, 969
Mph1103I ATGCAT 2 cut(s) 601, 1031
MroI TCCGGA 1 cut(s) 451
MseI TTAA 6 cut(s) 423, 488, 699, 795, 971, 1016
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 8 cut(s) 7, 147, 211, 233, 263, 273, 452, 628
MspR9I CCNGG 2 cut(s) 264, 274
MunI CAATTG 1 cut(s) 473
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 5 cut(s) 20, 259, 274, 283, 386
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 2 cut(s) 264, 274
NdeI CATATG 2 cut(s) 676, 724
NdeII GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
NlaIII CATG 6 cut(s) 172, 545, 641, 646, 686, 1029
NlaIV GGNNCC 3 cut(s) 73, 231, 632
NmuCI GTSAC 2 cut(s) 235, 667
NsiI ATGCAT 2 cut(s) 601, 1031
NspI RCATGY 2 cut(s) 686, 1029
PciI ACATGT 1 cut(s) 682
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 140
PfeI GAWTC 3 cut(s) 506, 692, 946
PflMI CCANNNNNTGG 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 8 cut(s) 16, 156, 183, 186, 255, 288, 341, 382
PleI GAGTC 1 cut(s) 736
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 736
PscI ACATGT 1 cut(s) 682
PsiI TTATAA 2 cut(s) 890, 1038
PspEI GGTNACC 1 cut(s) 667
PspN4I GGNNCC 3 cut(s) 73, 231, 632
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 524, 718
RsaI GTAC 9 cut(s) 5, 127, 173, 302, 515, 632, 681, 929, 1043
RsaNI GTAC 9 cut(s) 4, 126, 172, 301, 514, 631, 680, 928, 1042
RseI CAYNNNNRTG 1 cut(s) 564
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SacII CCGCGG 1 cut(s) 185
SaqAI TTAA 6 cut(s) 423, 488, 699, 795, 971, 1016
SatI GCNGC 8 cut(s) 15, 155, 182, 185, 254, 287, 340, 381
Sau3AI GATC 7 cut(s) 86, 175, 370, 448, 466, 524, 718
Sau96I GGNCC 1 cut(s) 149
ScaI AGTACT 2 cut(s) 302, 515
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 2 cut(s) 264, 274
SduI GDGCHC 1 cut(s) 270
SetI ASST 9 cut(s) 16, 32, 56, 165, 198, 357, 465, 810, 817
SfaNI GCATC 6 cut(s) 192, 376, 568, 608, 1016, 1038
SfcI CTRYAG 1 cut(s) 15
SfiI GGCCNNNNNGGCC 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 185
SgrAI CRCCGGYG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 185
SinI GGWCC 1 cut(s) 149
SmiI ATTTAAAT 1 cut(s) 972
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 4 cut(s) 473, 609, 869, 909
SspDI GGCGCC 1 cut(s) 229
SspI AATATT 1 cut(s) 976
StyD4I CCNGG 2 cut(s) 262, 272
StyI CCWWGG 1 cut(s) 754
SwaI ATTTAAAT 1 cut(s) 972
TaaI ACNGT 4 cut(s) 76, 120, 132, 713
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 78, 583
TasI AATT 4 cut(s) 473, 609, 869, 909
TatI WGTACW 4 cut(s) 300, 513, 679, 1041
TauI GCSGC 6 cut(s) 157, 184, 187, 256, 342, 383
TfiI GAWTC 3 cut(s) 506, 692, 946
Tru1I TTAA 6 cut(s) 423, 488, 699, 795, 971, 1016
Tru9I TTAA 6 cut(s) 423, 488, 699, 795, 971, 1016
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 2 cut(s) 235, 667
TseI GCWGC 2 cut(s) 14, 286
Tsp45I GTSAC 2 cut(s) 235, 667
TspDTI ATGAA 8 cut(s) 55, 85, 157, 458, 506, 792, 889, 956
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 1 cut(s) 942
Van91I CCANNNNNTGG 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 149
XceI RCATGY 2 cut(s) 686, 1029
ZrmI AGTACT 2 cut(s) 302, 515
Zsp2I ATGCAT 2 cut(s) 601, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.